HHsearch alignment for GI: 254780374 and conserved domain: PRK12700
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed.
Probab=100.00 E-value=0 Score=449.86 Aligned_cols=182 Identities=27% Similarity=0.408 Sum_probs=165.1
Q ss_pred CCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 445576121577---55211232236768769999972410100001222345654455543334554455666554655
Q gi|254780374|r 56 STKKSYSLWRDS---HAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNY 132 (238)
Q Consensus 56 ~~~~~gSL~~~~---~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (238)
T Consensus 46 ~~~~~Gsiyq~~~~g~~~Lf~D~RA~~VGDilTV~i~E~~~Ask~~~t~~~r~~s~~~~~~~~~~~~~~~~-~~~~~~~~ 124 (230)
T PRK12700 46 SARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGVI-NDKLDTDI 124 (230)
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 78999643357666754000666447899869999987344322045543545663436555665456655-66556565
Q ss_pred CCCCCCCCCHHEECEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEE
Q ss_conf 55543211000000014899999999998079728997887798418879999997984776789973824205543999
Q gi|254780374|r 133 DGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARIS 212 (238)
Q Consensus 133 ~~~~~~~g~G~~~~~~~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~ 212 (238)
T Consensus 125 ~~~~~f~G~G~~~~sn~ltgtItvtV~~VlpNGNL~I~GeK~v~vN~~~e~Ir~sGiVRP~DI~~~NtV~S~~IAdArI~ 204 (230)
T PRK12700 125 SGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIE 204 (230)
T ss_pred CCCCCCCCCCCEECCCEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEE
T ss_conf 55543356543001135899999999998669958999989999889889999999998788899986970033548999
Q ss_pred EECEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 80203312334866689999985589
Q gi|254780374|r 213 YGGKGRTTELLRPPIGHQLIENLSPL 238 (238)
Q Consensus 213 y~g~G~~~d~~~~gwl~r~~~~i~Pl 238 (238)
T Consensus 205 Y~G~G~l~d~q~~GWl~rff~~v~PF 230 (230)
T PRK12700 205 YRSKGVMDEVQTMGWLQRFFLIASPF 230 (230)
T ss_pred ECCEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 84301215211549999998861899