Query         gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 238
No_of_seqs    135 out of 642
Neff          6.7 
Searched_HMMs 39220
Date          Sun May 29 16:03:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780374.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK12701 flgH flagellar basal  100.0       0       0  465.5  22.7  227    1-238     1-230 (230)
  2 PRK00249 flgH flagellar basal  100.0       0       0  464.0  23.7  227    4-238     5-231 (231)
  3 PRK12696 flgH flagellar basal  100.0       0       0  464.5  23.2  225    1-238     1-238 (238)
  4 PRK12788 flgH flagellar basal  100.0       0       0  462.8  23.3  228    6-238     4-231 (231)
  5 PRK12698 flgH flagellar basal  100.0       0       0  456.2  22.0  221    1-238     1-224 (224)
  6 PRK12407 flgH flagellar basal  100.0       0       0  451.2  21.6  218    2-238     1-220 (220)
  7 PRK12700 flgH flagellar basal  100.0       0       0  449.9  22.5  182   56-238    46-230 (230)
  8 PRK12697 flgH flagellar basal  100.0       0       0  447.0  22.3  211    9-238    15-227 (227)
  9 PRK12699 flgH flagellar basal  100.0       0       0  442.1  22.6  216    7-238    22-246 (246)
 10 COG2063 FlgH Flagellar basal b 100.0       0       0  415.8  20.9  225    6-235     4-230 (230)
 11 pfam02107 FlgH Flagellar L-rin 100.0       0       0  407.4  19.8  178   55-237     3-181 (181)
 12 PRK11627 hypothetical protein;  94.9   0.024 6.1E-07   34.7   2.9   25    1-25      1-25  (192)
 13 PRK09837 copper/silver efflux   91.5    0.29 7.5E-06   27.8   4.1   19    1-19      1-19  (460)
 14 PRK00022 lolB outer membrane l  91.0    0.22 5.5E-06   28.6   3.0   23    1-23      1-23  (203)
 15 TIGR02747 TraV type IV conjuga  90.4    0.16   4E-06   29.5   1.9   20    1-20      1-22  (174)
 16 PRK09915 putative outer membra  90.2     0.4   1E-05   26.9   3.8   21    1-21      6-27  (488)
 17 TIGR02722 lp_ uncharacterized   88.7       1 2.5E-05   24.5   4.9   86    3-91      4-97  (215)
 18 pfam06291 Lambda_Bor Bor prote  88.5    0.43 1.1E-05   26.8   2.9   25    1-26      1-25  (97)
 19 PRK10449 heat-inducible protei  88.2    0.76 1.9E-05   25.2   4.0   20    1-21      1-20  (140)
 20 COG3056 Uncharacterized lipopr  88.0    0.51 1.3E-05   26.3   3.0   23  146-168   132-154 (204)
 21 PRK09967 putative outer membra  87.8    0.37 9.5E-06   27.1   2.2   21    1-21      1-22  (160)
 22 pfam05643 DUF799 Putative bact  87.1    0.62 1.6E-05   25.8   3.0   23    1-24      1-23  (215)
 23 pfam07901 DUF1672 Protein of u  86.8    0.69 1.8E-05   25.5   3.1   21    1-21      1-21  (304)
 24 PRK10760 murein hydrolase B; P  86.8     1.4 3.7E-05   23.5   4.8   23    1-24      1-23  (357)
 25 pfam06474 MLTD_N MLTD_N.        86.2     1.2 3.1E-05   23.9   4.1   17    7-23      5-21  (93)
 26 PRK10866 outer membrane protei  85.7    0.69 1.7E-05   25.5   2.7   22    1-22      1-24  (243)
 27 PRK13883 conjugal transfer pro  85.3    0.58 1.5E-05   25.9   2.1   22    1-23      1-22  (156)
 28 PRK09810 entericidin A; Provis  84.8    0.57 1.5E-05   26.0   1.9   21    1-21      2-22  (41)
 29 COG3417 FlgN Collagen-binding   84.6     1.3 3.2E-05   23.8   3.6   20    2-21      4-23  (200)
 30 PRK13616 lipoprotein LpqB; Pro  84.2     1.1 2.9E-05   24.1   3.3   22    3-24      7-28  (590)
 31 TIGR03502 lipase_Pla1_cef extr  83.6     1.7 4.3E-05   23.0   3.9   20    1-20      1-21  (792)
 32 PRK10598 hypothetical protein;  81.4     1.1 2.7E-05   24.3   2.2   20    1-20      1-21  (186)
 33 COG4314 NosL Predicted lipopro  81.1     1.4 3.5E-05   23.6   2.7   23    1-23      1-23  (176)
 34 COG4851 CamS Protein involved   81.1     1.2 3.1E-05   23.9   2.4   24    1-24      1-25  (382)
 35 PRK00276 infA translation init  81.0     3.7 9.4E-05   20.9   4.9   57  153-214     8-70  (72)
 36 COG4764 Uncharacterized protei  80.8       1 2.6E-05   24.4   1.9   24    1-26      5-28  (197)
 37 COG3065 Slp Starvation-inducib  80.6       3 7.6E-05   21.4   4.3   58    3-87      8-66  (191)
 38 PRK11138 outer membrane protei  80.5     3.4 8.7E-05   21.1   4.5   19    2-20      4-22  (394)
 39 PRK11459 multidrug resistance   80.3     2.5 6.5E-05   21.9   3.8   20    1-20      1-24  (478)
 40 pfam08139 LPAM_1 Prokaryotic m  80.2     1.1 2.8E-05   24.1   2.0   21    1-22      1-21  (26)
 41 pfam07273 DUF1439 Protein of u  79.6     1.3 3.4E-05   23.6   2.2   20    1-20      1-20  (177)
 42 pfam06572 DUF1131 Protein of u  79.4       1 2.6E-05   24.4   1.6   20    1-20      1-20  (192)
 43 PRK09859 multidrug efflux syst  78.8     1.8 4.5E-05   22.9   2.6   20    1-20      1-23  (385)
 44 PRK11067 outer membrane protei  78.8     1.1 2.8E-05   24.2   1.5   32   61-95     64-95  (801)
 45 PRK10672 rare lipoprotein A; P  78.4     4.8 0.00012   20.2   4.7   25  151-175   161-185 (369)
 46 PRK09578 periplasmic multidrug  78.0       2 5.2E-05   22.5   2.7   20    2-21      7-26  (385)
 47 TIGR02887 spore_ger_x_C germin  77.6     1.4 3.5E-05   23.6   1.8   21    1-21      1-21  (400)
 48 TIGR00752 slp outer membrane l  76.5     5.4 0.00014   19.8   4.6   62    4-91      4-66  (190)
 49 COG5633 Predicted periplasmic   75.4     1.7 4.4E-05   23.0   1.8   22    1-23      1-22  (123)
 50 PRK11189 lipoprotein NlpI; Pro  74.4     3.1 7.9E-05   21.3   2.9   20    1-20      1-22  (297)
 51 COG5510 Predicted small secret  73.6     2.4 6.1E-05   22.1   2.1   20    1-20      2-24  (44)
 52 PRK10718 hypothetical protein;  73.3     1.3 3.2E-05   23.8   0.7   21    1-21      1-21  (191)
 53 COG3009 Uncharacterized protei  73.2     3.8 9.8E-05   20.8   3.1   29  152-180   115-145 (190)
 54 CHL00010 infA translation init  73.1     5.7 0.00015   19.7   4.0   59  153-216     8-72  (78)
 55 TIGR03300 assembly_YfgL outer   73.1     3.6 9.1E-05   20.9   2.9   16    5-20      3-18  (377)
 56 COG5645 Predicted periplasmic   72.6     1.7 4.4E-05   23.0   1.2   26    1-27      1-26  (80)
 57 PRK02944 OxaA-like protein pre  72.2     4.1  0.0001   20.6   3.1   21    1-21      1-24  (255)
 58 PRK10781 rcsF outer membrane l  72.1     6.6 0.00017   19.3   4.1   19    1-21      1-19  (133)
 59 PRK11443 hypothetical protein;  71.5     3.2 8.2E-05   21.2   2.4   18    1-20      1-18  (120)
 60 PRK13733 conjugal transfer pro  71.3    0.42 1.1E-05   26.8  -2.1   31  173-203   127-157 (171)
 61 cd04451 S1_IF1 S1_IF1: Transla  71.2       8  0.0002   18.8   4.7   39  153-196     2-40  (64)
 62 COG5461 Type IV pili component  71.0     5.4 0.00014   19.8   3.5   20   71-90     74-93  (224)
 63 PRK10783 mltD membrane-bound l  68.6     9.1 0.00023   18.4   4.5   17    8-24      6-22  (449)
 64 PRK11548 hypothetical protein;  68.2     3.3 8.5E-05   21.1   1.9   21    1-21      3-23  (113)
 65 pfam12262 Lipase_bact_N Bacter  68.0     7.4 0.00019   18.9   3.6   21    1-21      1-22  (269)
 66 pfam11153 DUF2931 Protein of u  67.8     3.6 9.1E-05   21.0   2.0   19  152-170   129-147 (202)
 67 PRK13731 conjugal transfer sur  67.6       3 7.6E-05   21.5   1.5   21    1-21      3-24  (243)
 68 pfam08085 Entericidin Enterici  67.3     3.9 9.9E-05   20.7   2.1   20    1-20      1-23  (42)
 69 PRK11251 DNA-binding transcrip  66.1       5 0.00013   20.0   2.5   23    1-23      1-23  (109)
 70 PRK12450 foldase protein PrsA;  65.5     3.9   1E-04   20.7   1.8   21    1-21      4-26  (309)
 71 TIGR03352 VI_chp_3 type VI sec  64.9     3.3 8.3E-05   21.2   1.3   15    7-21      5-19  (146)
 72 TIGR02522 pilus_cpaD pilus (Ca  64.6     7.5 0.00019   18.9   3.1   79    6-90      2-85  (211)
 73 TIGR03302 OM_YfiO outer membra  64.0     5.5 0.00014   19.8   2.4   19    4-22      3-21  (235)
 74 PRK11023 hypothetical protein;  63.7     4.7 0.00012   20.2   2.0   21    1-21      1-22  (191)
 75 PRK12442 translation initiatio  63.5      11 0.00029   17.8   4.7   63  152-219     7-75  (87)
 76 PRK06481 fumarate reductase fl  63.4      11 0.00029   17.8   5.1   41  149-190   203-243 (506)
 77 PRK10722 hypothetical protein;  63.2     5.9 0.00015   19.6   2.4   20    4-23     17-36  (248)
 78 PRK06033 hypothetical protein;  61.9      12 0.00031   17.6   5.2   32  158-191    50-81  (87)
 79 TIGR02269 TIGR02269 Myxococcus  61.7     5.7 0.00015   19.7   2.1   19    6-24      2-20  (228)
 80 TIGR02062 RNase_B exoribonucle  60.5     4.6 0.00012   20.3   1.4   25   73-97    635-659 (664)
 81 TIGR03525 GldK gliding motilit  60.1     6.3 0.00016   19.4   2.1   20    1-21      1-20  (449)
 82 PRK03095 prsA peptidylprolyl i  60.0     7.4 0.00019   19.0   2.4   20    1-20      1-21  (287)
 83 TIGR02544 III_secr_YscJ type I  60.0     5.8 0.00015   19.6   1.9   18  148-165   125-142 (203)
 84 COG3017 LolB Outer membrane li  59.8     7.1 0.00018   19.1   2.3   21    1-21      4-25  (206)
 85 TIGR03042 PS_II_psbQ_bact phot  59.7     9.2 0.00023   18.4   2.9   22    1-22      1-23  (142)
 86 PRK01326 prsA foldase protein   58.8     8.2 0.00021   18.7   2.5   20    1-20      1-23  (310)
 87 pfam07269 consensus             58.8     6.2 0.00016   19.4   1.9   19    1-22      1-19  (55)
 88 PRK10802 peptidoglycan-associa  58.4     7.7  0.0002   18.9   2.3   14   10-23     14-27  (173)
 89 PRK02463 OxaA-like protein pre  58.2      10 0.00026   18.1   2.9   14    8-21     14-27  (307)
 90 PRK10533 putative lipoprotein;  57.9     7.4 0.00019   19.0   2.1   21    1-21      1-22  (171)
 91 pfam05590 DUF769 Xylella fasti  57.9      12 0.00032   17.5   3.3   18    3-20      6-23  (279)
 92 pfam09533 DUF2380 Predicted li  56.9      11 0.00028   17.9   2.8   23    1-23      1-24  (220)
 93 pfam06604 consensus             56.3      15 0.00039   17.0   4.8   17    4-20      7-23  (181)
 94 PRK10523 lipoprotein involved   56.1      11 0.00029   17.8   2.8   24    1-24      2-27  (234)
 95 TIGR02238 recomb_DMC1 meiotic   56.1     1.9 4.9E-05   22.7  -1.1   31  203-235   199-229 (314)
 96 pfam06788 UPF0257 Uncharacteri  55.5     7.9  0.0002   18.8   1.9   21    1-22      1-21  (236)
 97 COG3126 Uncharacterized protei  54.8      16 0.00041   16.8   8.9   83    1-105     1-84  (158)
 98 PRK11372 lysozyme inhibitor; P  54.8     8.9 0.00023   18.5   2.1   18    1-20      3-20  (109)
 99 PRK10510 putative outer membra  54.0     9.3 0.00024   18.3   2.1   20    1-20      1-23  (219)
100 PRK10397 hypothetical protein;  53.7     8.9 0.00023   18.5   2.0   18    1-20      1-18  (137)
101 PRK11671 mltC murein transglyc  53.1      11 0.00028   17.9   2.4   25    1-25      1-25  (360)
102 PRK13835 conjugal transfer pro  52.9      15 0.00038   17.1   3.0   21    1-22      1-21  (144)
103 COG3521 Predicted component of  52.8      17 0.00044   16.6   3.7   22    1-22      1-24  (159)
104 pfam10671 TcpQ Toxin co-regula  52.6     4.5 0.00011   20.4   0.3   22    1-22      1-22  (178)
105 COG4380 Uncharacterized protei  52.4      15 0.00039   17.0   3.0   22    3-24      2-23  (216)
106 TIGR02521 type_IV_pilW type IV  51.5      11 0.00029   17.8   2.2   15    8-22      2-16  (247)
107 PRK02939 hypothetical protein;  51.3      14 0.00036   17.2   2.7   22    1-23      1-22  (236)
108 COG3218 ABC-type uncharacteriz  51.3      17 0.00044   16.7   3.1   22  197-218   157-178 (205)
109 pfam02402 Lysis_col Lysis prot  51.0     8.8 0.00023   18.5   1.6   20    1-20      1-21  (46)
110 COG4607 CeuA ABC-type enteroch  50.6      13 0.00033   17.4   2.4   22    1-22      2-23  (320)
111 PRK04405 prsA peptidylprolyl i  50.4      11 0.00027   17.9   1.9   21    1-21      5-27  (298)
112 PRK13613 lipoprotein LpqB; Pro  50.3      14 0.00035   17.2   2.5   20    3-22      2-21  (603)
113 PRK11162 mltA murein transglyc  50.2      19 0.00048   16.4   3.9   30  154-183   164-193 (362)
114 COG4785 NlpI Lipoprotein NlpI,  49.9      16 0.00042   16.8   2.8   26    1-26      1-27  (297)
115 TIGR02898 spore_YhcN_YlaJ spor  49.7     9.8 0.00025   18.2   1.6   18    5-22      2-21  (185)
116 PRK10838 spr putative outer me  48.6      19 0.00048   16.4   3.0   18    6-23     14-31  (188)
117 COG3168 PilP Tfp pilus assembl  48.5      20 0.00051   16.2   4.6   39  137-181    97-135 (170)
118 PRK03002 prsA peptidylprolyl i  48.4      16  0.0004   16.9   2.5   20    1-20      1-23  (285)
119 PRK13861 type IV secretion sys  48.2      17 0.00043   16.7   2.7   18    1-19      1-18  (293)
120 PRK13614 lipoprotein LpqB; Pro  48.0      21 0.00052   16.2   4.1   15    7-21     13-27  (573)
121 TIGR03431 PhnD phosphonate ABC  47.4      15 0.00038   17.0   2.3   24    1-24      1-24  (288)
122 pfam10447 EXOSC1 Exosome compo  46.8      21 0.00054   16.1   5.1   42  153-199     7-49  (72)
123 pfam06316 Ail_Lom Enterobacter  46.8      17 0.00043   16.7   2.5   22    1-22      1-22  (199)
124 PRK11260 cystine transporter s  46.5      15 0.00039   17.0   2.3   20    1-20      4-23  (264)
125 COG3015 CutF Uncharacterized l  45.9      14 0.00036   17.2   2.0   23    1-23      2-24  (178)
126 COG0361 InfA Translation initi  45.7      22 0.00057   15.9   4.4   59  151-214     6-70  (75)
127 COG3470 Tpd Uncharacterized pr  45.5      21 0.00053   16.1   2.8   21    1-21      3-23  (179)
128 COG4669 EscJ Type III secretor  45.4      14 0.00035   17.2   1.9   17  148-164   119-135 (246)
129 pfam11839 DUF3359 Protein of u  44.6      16  0.0004   16.9   2.0   23    1-23      1-25  (97)
130 pfam01298 Lipoprotein_5 Transf  44.6      23 0.00059   15.8   5.9   10   11-20     13-22  (589)
131 TIGR03516 ppisom_GldI peptidyl  44.2      16  0.0004   16.9   2.0   19   75-93     83-101 (177)
132 PRK05698 fliN flagellar motor   43.6      24 0.00061   15.7   5.5   35  158-194   115-149 (155)
133 cd05695 S1_Rrp5_repeat_hs3 S1_  43.6      24 0.00061   15.7   6.7   49  154-215     4-57  (66)
134 pfam12046 DUF3529 Protein of u  43.5      13 0.00033   17.4   1.5   28  144-173   130-157 (173)
135 COG3133 SlyB Outer membrane li  43.1      15 0.00038   17.0   1.7   21    1-21      1-22  (154)
136 COG2980 RlpB Rare lipoprotein   43.1      22 0.00057   15.9   2.7   28    1-28      1-29  (178)
137 TIGR01845 outer_NodT efflux tr  42.8      19 0.00049   16.4   2.3   11   10-20      2-12  (477)
138 TIGR02567 YscW type III secret  42.7     7.1 0.00018   19.1   0.1   13    9-21      2-14  (131)
139 PRK10796 LPS-assembly lipoprot  42.3      22 0.00057   15.9   2.5   25    1-25      1-26  (196)
140 COG4594 FecB ABC-type Fe3+-cit  41.8      21 0.00053   16.1   2.3   18    4-21      8-25  (310)
141 COG4238 Murein lipoprotein [Ce  40.6      19 0.00047   16.4   1.9   18    4-21      7-24  (78)
142 pfam11873 DUF3393 Domain of un  40.4      22 0.00055   16.0   2.2   13   10-22      8-20  (200)
143 COG2834 LolA Outer membrane li  38.9      19 0.00049   16.3   1.8   21    2-22      6-26  (211)
144 PRK11530 hypothetical protein;  38.8      17 0.00043   16.7   1.5   18    4-21      3-20  (176)
145 PRK10175 hypothetical protein;  38.2      16 0.00041   16.8   1.3   20    7-26      5-24  (75)
146 TIGR01781 Trep_dent_lipo Trepo  38.0      24 0.00061   15.8   2.1   21    3-24      7-27  (463)
147 TIGR01433 CyoA ubiquinol oxida  37.7      14 0.00036   17.2   0.9   13    7-19      2-14  (228)
148 PRK08983 fliN flagellar motor   37.5      30 0.00076   15.2   5.6   35  158-194    86-120 (126)
149 TIGR01004 PulS_OutS lipoprotei  37.2      30 0.00077   15.1   2.7   15    6-20     12-26  (136)
150 PRK10957 iron-enterobactin tra  37.0      24 0.00062   15.7   2.0   19    3-21      6-24  (319)
151 COG2143 Thioredoxin-related pr  36.7      29 0.00075   15.2   2.5   24    1-24      1-25  (182)
152 PRK01622 OxaA-like protein pre  36.5      31 0.00079   15.0   2.9   13    8-20     13-25  (266)
153 TIGR03659 IsdE heme ABC transp  36.4      28 0.00071   15.3   2.3   17    7-23      8-24  (289)
154 pfam10566 Glyco_hydro_97 Glyco  36.2      26 0.00066   15.5   2.1   16    1-16      1-16  (643)
155 PRK07963 fliN flagellar motor   36.1      31  0.0008   15.0   5.6   35  158-194    96-130 (137)
156 PRK11281 potassium efflux prot  35.9      18 0.00047   16.5   1.3   13   75-87    935-947 (1107)
157 PRK10929 hypothetical protein;  35.9      18 0.00047   16.5   1.3   12   75-86    933-944 (1109)
158 COG5567 Predicted small peripl  35.8      32 0.00081   15.0   4.5   20    1-20      1-22  (58)
159 PRK13684 Ycf48-like protein; P  35.7      32 0.00081   15.0   2.9   16    5-20     11-26  (333)
160 smart00108 B_lectin Bulb-type   34.8      25 0.00063   15.7   1.8   18  156-173    87-104 (114)
161 TIGR03511 GldH_lipo gliding mo  34.8      16 0.00041   16.8   0.9   19    1-19      3-21  (156)
162 PRK11616 hypothetical protein;  34.8      31 0.00078   15.1   2.3   16   13-28     15-30  (109)
163 PRK10936 periplasmic sensory p  34.7      33 0.00084   14.9   3.7   24    1-24      1-24  (340)
164 pfam09158 MotCF Bacteriophage   34.5      33 0.00085   14.8   2.9   20  156-175    43-62  (103)
165 COG1021 EntE Peptide arylation  33.7      24 0.00061   15.8   1.6   33  153-185   416-448 (542)
166 COG2935 Putative arginyl-tRNA:  32.8      27  0.0007   15.4   1.8   17  153-169   162-178 (253)
167 COG4259 Uncharacterized protei  32.7      36 0.00091   14.7   2.6   20    1-20      1-24  (121)
168 COG1729 Uncharacterized protei  32.3      36 0.00092   14.6   2.5   23    1-23      1-23  (262)
169 PRK02889 tolB translocation pr  32.1      27 0.00069   15.4   1.6   20    1-20      4-23  (430)
170 COG4143 TbpA ABC-type thiamine  31.2      38 0.00096   14.5   2.3   19    1-19      1-19  (336)
171 TIGR01067 rplN_bact ribosomal   30.8      37 0.00094   14.6   2.1   34   74-107    29-62  (128)
172 PRK09973 putative outer membra  30.7      27 0.00069   15.4   1.5   20    1-20      1-22  (85)
173 PRK10871 nlpD lipoprotein NlpD  30.7      37 0.00095   14.5   2.2   48  148-202   285-336 (374)
174 cd00028 B_lectin Bulb-type man  30.7      35 0.00088   14.7   2.0   17  156-172    88-104 (116)
175 pfam09676 TraV Type IV conjuga  30.3      19 0.00048   16.4   0.6   20  161-180   113-132 (134)
176 PRK04792 tolB translocation pr  30.1      38 0.00097   14.5   2.1   19    1-19      1-20  (450)
177 TIGR01645 half-pint poly-U bin  30.0      18 0.00046   16.5   0.4   34  165-198   667-707 (791)
178 COG3317 NlpB Uncharacterized l  29.8      40   0.001   14.4   6.8   25   70-94     85-109 (342)
179 cd05734 Ig7_DSCAM Seventh immu  29.6      34 0.00086   14.8   1.8   14  159-172    38-51  (79)
180 COG4939 Major membrane immunog  29.4      38 0.00096   14.5   2.0   21    1-21      1-22  (147)
181 PRK10477 outer membrane lipopr  29.1      41   0.001   14.3   3.2   17    5-21      6-22  (177)
182 PRK10959 outer membrane protei  29.0      41   0.001   14.3   2.1   18    1-18      1-18  (212)
183 PRK09495 glnH glutamine ABC tr  28.9      40   0.001   14.3   2.1   19    1-19      1-19  (247)
184 pfam01203 GSPII_N Bacterial ty  28.7      26 0.00067   15.5   1.1   17   52-68     36-52  (251)
185 pfam03866 HAP Hydrophobic abun  28.3      42  0.0011   14.2   2.2   19    1-20      1-19  (167)
186 PHA00407 phage lambda Rz1-like  28.1      42  0.0011   14.2   2.7   15    8-22     39-53  (84)
187 TIGR02134 transald_staph trans  27.6      21 0.00053   16.1   0.4   25   61-86    173-198 (237)
188 pfam07119 DUF1375 Protein of u  26.8      28 0.00072   15.3   1.0   19   10-28      3-21  (70)
189 PRK02998 prsA peptidylprolyl i  26.7      45  0.0011   14.0   2.5   20    1-20      1-24  (283)
190 KOG1923 consensus               26.6      45  0.0011   14.0   4.8   33   10-42    264-296 (830)
191 COG3107 LppC Putative lipoprot  26.3      46  0.0012   14.0   2.1   15    8-22     17-31  (604)
192 PRK10554 outer membrane porin   26.1      46  0.0012   14.0   2.0   20    1-20      1-20  (373)
193 PRK03757 hypothetical protein;  26.0      46  0.0012   13.9   2.2   15    1-15      1-15  (191)
194 pfam01315 Ald_Xan_dh_C Aldehyd  26.0      46  0.0012   13.9   3.0   31   68-98     69-99  (111)
195 PRK08190 bifunctional enoyl-Co  25.8      47  0.0012   13.9   2.5   20  153-172   103-122 (465)
196 pfam07241 consensus             25.7      47  0.0012   13.9   3.6   30  162-191    53-82  (87)
197 TIGR00008 infA translation ini  25.7      47  0.0012   13.9   4.0   39  153-196     6-44  (69)
198 PRK09752 adhesin; Provisional   25.5      39 0.00099   14.4   1.5   22   59-80    957-980 (1250)
199 PRK11063 metQ DL-methionine tr  25.5      47  0.0012   13.9   2.2   15    8-22     13-27  (271)
200 TIGR03044 PS_II_psb27 photosys  24.9      40   0.001   14.3   1.5   16    5-20     12-27  (135)
201 pfam06924 DUF1281 Protein of u  24.9      42  0.0011   14.2   1.6   15   10-24     32-46  (134)
202 PRK11669 pbpG D-alanyl-D-alani  24.9      49  0.0012   13.8   3.4   19    3-21      2-20  (308)
203 PRK10525 cytochrome o ubiquino  24.8      43  0.0011   14.1   1.6   13    7-19     14-26  (305)
204 pfam11353 DUF3153 Protein of u  24.4      27 0.00069   15.4   0.5   19    7-25      3-21  (210)
205 PRK10002 outer membrane protei  24.2      50  0.0013   13.7   2.0   19    1-19      2-20  (362)
206 PRK06687 chlorohydrolase; Vali  24.1      37 0.00094   14.5   1.2   15   77-91    205-219 (422)
207 COG1462 CsgG Uncharacterized p  23.5      52  0.0013   13.6   4.7   28  136-163   139-166 (252)
208 COG4880 Secreted protein conta  23.3      52  0.0013   13.6   2.5   49  158-208   182-250 (603)
209 PRK10461 thiamine biosynthesis  23.3      52  0.0013   13.6   2.6   17    5-21      7-23  (351)
210 PRK10759 hypothetical protein;  23.1      40   0.001   14.3   1.2   13    7-19      4-16  (106)
211 pfam06085 Rz1 Lipoprotein Rz1   22.9      53  0.0014   13.6   3.4   21    1-21      1-23  (59)
212 KOG1193 consensus               22.8      53  0.0014   13.6   1.8   29  139-167   302-331 (511)
213 pfam09619 YscW Type III secret  22.4      28 0.00073   15.3   0.3   15    9-23      2-16  (124)
214 TIGR02917 PEP_TPR_lipo putativ  22.3      54  0.0014   13.5   2.3   18    4-21      7-26  (924)
215 pfam10368 YkyA Putative cell-w  21.9      37 0.00094   14.6   0.8   11   10-20      3-13  (205)
216 PRK11479 hypothetical protein;  21.7      56  0.0014   13.4   4.6   20    5-24      7-26  (273)
217 pfam05968 Bacillus_PapR Bacill  21.6      56  0.0014   13.4   2.1   19    1-19      1-19  (48)
218 PRK11679 lipoprotein; Provisio  21.4      57  0.0015   13.4   4.4   21   70-90     90-110 (345)
219 PRK11186 carboxy-terminal prot  21.3      57  0.0015   13.4   2.2   32  130-165   237-268 (673)
220 PHA00144 major head protein     21.1      57  0.0015   13.3   4.3  105   68-177   329-436 (438)
221 TIGR01935 NOT-MenG RraA family  21.0      58  0.0015   13.3   2.0   31   69-99     21-53  (155)
222 PRK06760 hypothetical protein;  20.9      58  0.0015   13.3   1.7   38   69-108    56-93  (223)
223 PRK13697 cytochrome c6; Provis  20.9      58  0.0015   13.3   2.3   19    1-19      1-19  (111)
224 pfam03304 Mlp Mlp lipoprotein   20.9      58  0.0015   13.3   1.7   19    3-21      2-21  (150)
225 pfam10023 DUF2265 Predicted am  20.5      43  0.0011   14.1   0.9   14    7-20      2-15  (338)
226 COG4775 Outer membrane protein  20.4      57  0.0015   13.3   1.5   28   69-96     69-96  (766)
227 TIGR02236 recomb_radA DNA repa  20.0      17 0.00043   16.7  -1.2   22  204-225   223-244 (333)

No 1  
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=465.48  Aligned_cols=227  Identities=28%  Similarity=0.394  Sum_probs=195.7

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             911799999999-99854336720025687536677776644445644555444444455761215775-5211232236
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSH-AALFKDSRAL   78 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~-~~lf~D~RA~   78 (238)
                      |+|+.+++.|++ ++|+||++..++           .+.+.|.|+|++++.+.+..+.+.+||||+.++ .+||+|+||+
T Consensus         1 m~r~~~~~~~la~~lL~GC~~~~~~-----------~p~~~p~~aP~~p~~p~p~~~~~~~GSl~~~~~~~~lF~D~RA~   69 (230)
T PRK12701          1 MNRLNIAVSCLATALLFGCEALHPP-----------APGDNPDYAPTYPVTPDPKELRKVSGAIYSSETALPLFETPRAR   69 (230)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9258999999999997556688999-----------99999886776888889765778997530378876442555336


Q ss_pred             CCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEE
Q ss_conf             76876999997241010000122234565445554333455445566655465555543211000000014899999999
Q gi|254780374|r   79 NVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIV  158 (238)
Q Consensus        79 ~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V  158 (238)
                      +|||||||+|.|+++|++++++..+|+++.+...+.+++.....+......++.+++.+|+|+|+++|+++|+++|+|+|
T Consensus        70 ~VGDilTV~i~E~t~Asks~~t~~~k~~s~~~~~~~~~g~~~~~~~~~~~~~~~~s~~~f~G~G~~~qs~~l~gtIta~V  149 (230)
T PRK12701         70 HPGDILTVFLIEKTDAQKNATTTQRKNDTTKITNKLFLGRPISLGSGYSMDFDLDNQRQFNGEGRSIQNNKLAGSISVTV  149 (230)
T ss_pred             CCCCEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf             78987999999733433311323254565445653224654324566654446666543556430102214789999999


Q ss_pred             EEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHH-HCC
Q ss_conf             9980797289978877984188799999979847767899738242055439998020331233486668999998-558
Q gi|254780374|r  159 TAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIEN-LSP  237 (238)
Q Consensus       159 ~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~-i~P  237 (238)
                      ++|||||||+|+|+|||+||+|.|+|+|+|||||+||++||||.|+|||||||+|.|+|.++|+|+||||+|||.. +||
T Consensus       150 ~~VLpNGNLvI~GeK~v~vN~e~e~i~lsGiVRP~DI~~~NtV~S~~IAdArI~Y~G~G~l~d~~~~GWltr~f~s~~~P  229 (230)
T PRK12701        150 AKVLANGNMVVQGEKWVRINQGNEFVRLSGIVRPQDIKADNTITSDRIANARISYGGTGQINNTNAQGWLSRILWGPLFP  229 (230)
T ss_pred             EEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCEECCCCCCCCCHHHHHHCCCCCC
T ss_conf             99866997999998999987988999999998878879998697102243799982202205342559899975435588


Q ss_pred             C
Q ss_conf             9
Q gi|254780374|r  238 L  238 (238)
Q Consensus       238 l  238 (238)
                      -
T Consensus       230 ~  230 (230)
T PRK12701        230 T  230 (230)
T ss_pred             C
T ss_conf             9


No 2  
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=464.04  Aligned_cols=227  Identities=37%  Similarity=0.546  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             79999999999854336720025687536677776644445644555444444455761215775521123223676876
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRALNVGDI   83 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA~~VGDI   83 (238)
                      ++.++++++++|+||++..++ ...|.++|+.++.+.+.+.+.     ++..+..++||||+.++++||+|+||++||||
T Consensus         5 ~~~~~~~~~~~LsgCa~~~~~-~~~p~~~p~~~~~~~p~~~~~-----~~~Gsiy~~~sl~~~~~~~Lf~D~RA~~VGDi   78 (231)
T PRK00249          5 LIALALLLLLLLSGCASIPPK-PLIPALAPPTSPTPLPGYAPV-----EPNGSIFQAGSLWNYGYRPLFKDRRARNVGDI   78 (231)
T ss_pred             HHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             999999999998753489998-888776898888788876777-----89887457645546555635123443789996


Q ss_pred             EEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECC
Q ss_conf             99999724101000012223456544555433345544556665546555554321100000001489999999999807
Q gi|254780374|r   84 LTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILE  163 (238)
Q Consensus        84 iTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~Vlp  163 (238)
                      |||+|+|+++|+++++++.+|+++.+.+++.+++.....  .....++.+++++|+|+|+++|+++|+++|+|+|++|||
T Consensus        79 iTV~i~E~~~As~~~~t~~~r~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~f~G~G~~~~s~~ltgtIta~V~~Vlp  156 (231)
T PRK00249         79 LTVVLQENTSASKSNSTNRSRDGSESFGLPSLFGYLQGG--DANASLETSSDNSFKGKGSANRSNTLSGTITVTVTQVLP  156 (231)
T ss_pred             EEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECC
T ss_conf             999999704011035643144565454774325665666--665443345553135654111001589999999999878


Q ss_pred             CCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             972899788779841887999999798477678997382420554399980203312334866689999985589
Q gi|254780374|r  164 NGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL  238 (238)
Q Consensus       164 NGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i~Pl  238 (238)
                      ||||+|+|+|+|+||+|.|+|+|+|||||+||+++|+|.|+|||||||+|.|+|.++|+|+||||+|||+++||.
T Consensus       157 NGnL~I~G~K~v~vN~e~e~i~~sGvVRP~DI~~~NtV~S~~IAdArI~Y~G~G~l~d~~~~gWl~r~~~~i~PF  231 (231)
T PRK00249        157 NGNLVIRGEKEVRVNQGDEFLRVSGVVRPRDISGDNTISSTRIADARISYGGRGAISDAQQPGWGQRFFDSLSPF  231 (231)
T ss_pred             CCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             996899999999989988999999999978889997596104244799980201315233679999998861899


No 3  
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=464.55  Aligned_cols=225  Identities=32%  Similarity=0.440  Sum_probs=192.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             91179999999999854336720025687536677776644445644555444444455761215775-52112322367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSH-AALFKDSRALN   79 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~-~~lf~D~RA~~   79 (238)
                      |+|.+++.+|++++|+||++..+.....|.+.|             +++++.|+....++||||++++ .+||+|+||++
T Consensus         1 mm~~~l~~~~~~~~L~GC~~~~~~~~~~~~~~p-------------p~~~~~p~~~~~~~GSl~~~~~~~~LF~D~RA~~   67 (238)
T PRK12696          1 MIRKLLAASCAVLLLSGCNAARQQPSPLPPVTP-------------PQAYVEPEDAAANPGSLFSDAEADLLFSDSRARR   67 (238)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             958999999999995165688888888899889-------------9776676667899986455898775535553356


Q ss_pred             CCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCHHEECE
Q ss_conf             68769999972410100001222345654455543334554455------------666554655555432110000000
Q gi|254780374|r   80 VGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQT------------PQMNGNLNYDGGGASSGKGSISRA  147 (238)
Q Consensus        80 VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~G~~~~~  147 (238)
                      |||||||+|.|+++|+++++++.+|+++.+.+++++||......            ....+.++.+++++|+|+|+++|+
T Consensus        68 VGDilTV~i~E~t~A~~sa~t~~~r~ss~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~f~G~G~~~~s  147 (238)
T PRK12696         68 VGDIVLVKIVENAKAKNKADTTADKDSTNEYGVSAFFGQSSASINPMNPVGAFGGKVGTNPLLQTSSKSKLSGTGETKRE  147 (238)
T ss_pred             CCCEEEEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             89869999998145432036441445565547641136543234655444445666565422234554434565301001


Q ss_pred             EEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCH
Q ss_conf             14899999999998079728997887798418879999997984776789973824205543999802033123348666
Q gi|254780374|r  148 EKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPI  227 (238)
Q Consensus       148 ~~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gw  227 (238)
                      ++|+++|+|+|++|||||||+|+|+|+|++|+|.|+|+|+|||||+||+++|+|.|+|||||||+|.|+|.++|+|+|||
T Consensus       148 ~~lt~tIaa~Vv~VLpNGnL~I~G~k~v~vn~~~~~i~~sGiVrp~DI~~~NtV~S~~iAdarI~y~G~G~l~d~q~~gW  227 (238)
T PRK12696        148 NTVTATIAARVLRVMPGGLLQVEGARETRVNDETQYIVVSGLVRSRDVASDNSVMSTQMADARIAYYGKGVLADKQRPGW  227 (238)
T ss_pred             CEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCCEEECCCCCCCH
T ss_conf             35899999999998779959999989999889889999999988899799986961032547999812012364436699


Q ss_pred             HHHHHHHHCCC
Q ss_conf             89999985589
Q gi|254780374|r  228 GHQLIENLSPL  238 (238)
Q Consensus       228 l~r~~~~i~Pl  238 (238)
                      |+|||+++||.
T Consensus       228 l~r~~~~v~PF  238 (238)
T PRK12696        228 FTRLMDNLWPF  238 (238)
T ss_pred             HHHHHHHCCCC
T ss_conf             99997620899


No 4  
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=462.81  Aligned_cols=228  Identities=38%  Similarity=0.624  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99999999985433672002568753667777664444564455544444445576121577552112322367687699
Q gi|254780374|r    6 FIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRALNVGDILT   85 (238)
Q Consensus         6 l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA~~VGDIiT   85 (238)
                      +++++++++|+||+++++++++.|.++|+.++.... .+|  .|..+........+|||+++ .+||+|+||++||||||
T Consensus         4 l~~~~a~l~LsGCa~~~~~~~~~P~~sPv~~~~~~~-~~~--~P~~p~~~~~~~~~Sl~~~~-~~LF~D~RA~~VGDIlT   79 (231)
T PRK12788          4 LVAILACLALAGCANNLADALQAPRMSPIGQGLRAD-ARA--IPVEPRMRTPVSRRSLWDER-TDLYRDPRASRTGDLLT   79 (231)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC--CCCCCCCCCCCCCCCCHHCC-CCCCCCCCCCCCCCEEE
T ss_conf             999999999764038743367899878888876666-777--78887777777778411145-53336664233798499


Q ss_pred             EEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECCCC
Q ss_conf             99972410100001222345654455543334554455666554655555432110000000148999999999980797
Q gi|254780374|r   86 VDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENG  165 (238)
Q Consensus        86 V~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~VlpNG  165 (238)
                      |+|.|+++|+++++++++|+++.+.+++.+++.... ........+.+++.+|+|+|+++|+++|+++|+|+|++|||||
T Consensus        80 V~i~e~~~As~~~~t~~sr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~G~~~rs~~lt~tIaa~V~~VLPNG  158 (231)
T PRK12788         80 VTISMNDKATLDNKTDRSRDSQTKFGLDYLAEFLPW-SDKGKLTANVSSQTSTKGTGKIDRTEEVKFSVAAIVVDVLPNG  158 (231)
T ss_pred             EEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCC
T ss_conf             999872432220355414345635475101013665-6666533345566434564211002437899999999987899


Q ss_pred             CEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             2899788779841887999999798477678997382420554399980203312334866689999985589
Q gi|254780374|r  166 NLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL  238 (238)
Q Consensus       166 nL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i~Pl  238 (238)
                      ||+|+|+|+|++|+|.|+|+|+|||||+||+++|+|.|+|||||||+|.|+|.++|+|+||||+|||++|||.
T Consensus       159 NLvI~G~k~v~vN~e~e~i~vsGiVRP~DI~~~Ntv~s~~iAdarI~Y~G~G~l~d~q~pgW~~r~~~~i~PF  231 (231)
T PRK12788        159 NLLISGSQEVRVNYEMRVLNVGGIVRPLDITRNNTIAYEKVAEARISYGGRGRLMEVQQPAWGHQVYDQVVPF  231 (231)
T ss_pred             CEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHCCCC
T ss_conf             5899999999988986999999998879979997498212256899980203236222659999998760899


No 5  
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=456.18  Aligned_cols=221  Identities=26%  Similarity=0.364  Sum_probs=184.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             911799999999998543367200-25687536677776644445644555444444455761215775-5211232236
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISE-ITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSH-AALFKDSRAL   78 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~-~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~-~~lf~D~RA~   78 (238)
                      |+|+++++++  ++|+||++..++ ....|.            +.|+.+  ..++.+....||||++++ .+||+|+||+
T Consensus         1 M~r~~l~~~~--l~L~gCa~~~~~p~~~~p~------------~aP~~p--~~~~~~~~~~GSi~~~~~~~~lf~D~RA~   64 (224)
T PRK12698          1 MARYILLALA--LLLAGCSSTPKKPIADDPY------------YAPVYP--EAPPTKIAATGSIFQDSQANSLYSDIKAH   64 (224)
T ss_pred             CHHHHHHHHH--HHHHCCCCCCCCCCCCCCC------------CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9779999999--9983656889888888988------------678679--98876669997402588777542352104


Q ss_pred             CCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEE
Q ss_conf             76876999997241010000122234565445554333455445566655465555543211000000014899999999
Q gi|254780374|r   79 NVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIV  158 (238)
Q Consensus        79 ~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V  158 (238)
                      +|||||||+|+|+++|+++++++++|+++.+++.+.+++...... .....++.+++++|+|+|+++|+++|+++|+|+|
T Consensus        65 ~VGDIvTV~i~E~~~A~~s~~t~~~r~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~f~G~G~~~~s~~ltgtIta~V  143 (224)
T PRK12698         65 KVGDIITVVLKESTQAKKSANNEIKKGSDLSLDPIYAGGSNVSIG-GVPLDLGYKDSMNTKRESDADQSNSLSGSISANV  143 (224)
T ss_pred             CCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEECCCEEEEEEEEEE
T ss_conf             599879999987043321146400344553436652366432357-7654344456653456330101024899999999


Q ss_pred             EEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHH-HHCC
Q ss_conf             998079728997887798418879999997984776789973824205543999802033123348666899999-8558
Q gi|254780374|r  159 TAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIE-NLSP  237 (238)
Q Consensus       159 ~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~-~i~P  237 (238)
                      +||||||||+|+|+|+|+||+|.|+|+|+|||||+||++||+|.|+|||||||+|.|+|.++|+|+||||+|||+ .+||
T Consensus       144 ~~VlpNGNL~I~G~k~i~vN~~~e~i~~sGvVRP~DI~~~NtV~S~~IAdArI~Y~G~G~l~d~q~~GWl~r~f~~~~wP  223 (224)
T PRK12698        144 MQVLPNGNLVIRGEKWISINNGDEFIRLTGIVRSQDITPDNTIDSTRVANARIQYSGTGTFADAQKVGWLSQFFMSDWWP  223 (224)
T ss_pred             EEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCEEEECCCCCCCHHHHHHCCCCCC
T ss_conf             99866980999998999988987999999999878889998697002243799983224126332448889976305699


Q ss_pred             C
Q ss_conf             9
Q gi|254780374|r  238 L  238 (238)
Q Consensus       238 l  238 (238)
                      .
T Consensus       224 F  224 (224)
T PRK12698        224 F  224 (224)
T ss_pred             C
T ss_conf             9


No 6  
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=451.19  Aligned_cols=218  Identities=26%  Similarity=0.352  Sum_probs=180.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf             117999999999985433672002568753667777664444564455544444445576121577-5521123223676
Q gi|254780374|r    2 YRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDS-HAALFKDSRALNV   80 (238)
Q Consensus         2 ~r~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~-~~~lf~D~RA~~V   80 (238)
                      +|+ +++.+++++|+||++.......           +.+.+.|+.  +..++.....+||||+.+ +.+||+|+||++|
T Consensus         1 kr~-l~l~~~~l~LsGC~~~~~~~~~-----------~~~~~app~--~~~~p~~~~~~GSi~~~~~~~~lf~D~RA~~V   66 (220)
T PRK12407          1 KRF-LILTPMVLALCGCESPALLVQK-----------DDAEFAPPA--NLIQPATVTEGGGLFQPAYSWSLLQDRRAYRI   66 (220)
T ss_pred             CCC-HHHHHHHHHHHCCCCCCCCCCC-----------CCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             915-7999999997365888877888-----------987878977--76778888999730007987755365544568


Q ss_pred             CCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEE
Q ss_conf             87699999724101000012223456544555433345544556665546555554321100000001489999999999
Q gi|254780374|r   81 GDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTA  160 (238)
Q Consensus        81 GDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~  160 (238)
                      ||||||+|.|+++|+++++++.+|+++.+.+++.+++....   .  ...+.+++++|+|+|+++|+++|+++|+|+|++
T Consensus        67 GDIlTV~i~E~t~As~s~~t~~~r~~~~~~~~~~~~g~~~~---~--~~~~~~~~~~f~G~G~~~qs~~ltg~itvtV~~  141 (220)
T PRK12407         67 GDILTVILDESTQSSKQAKTNFGKKNDMSLGVPEVLGKKLN---K--FGGSISGKRDFDGSATSAQQNMLRGSITVAVHQ  141 (220)
T ss_pred             CCEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCHHCCCCC---C--CCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEE
T ss_conf             98699999871443320254424456645466202044443---3--555444564346730220132588899999999


Q ss_pred             ECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHH-HCCC
Q ss_conf             80797289978877984188799999979847767899738242055439998020331233486668999998-5589
Q gi|254780374|r  161 ILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIEN-LSPL  238 (238)
Q Consensus       161 VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~-i~Pl  238 (238)
                      |||||||+|+|+|+|++|+|.|+|+|+|||||+||++||+|.|+|||||||+|.|+|.++|+|+||||+|||+. +|||
T Consensus       142 VlpNGNLvI~G~K~v~vN~e~e~irvsGiVRP~DI~~dNtV~S~~iAdArI~Y~G~G~l~d~~~~GWlsrff~~~~~p~  220 (220)
T PRK12407        142 VLPNGVLVIRGEKWLTLNQGDEYMRVTGLVRADDVARDNSVSSQRIANARISYAGRGALSDANSAGWLTRFFNHPLFPI  220 (220)
T ss_pred             ECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEEEEEEEECCCCCCCHHHHHHCCCCCCC
T ss_conf             8789968999979999899879999999988788799985972132448999820151363425388899757675789


No 7  
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=449.86  Aligned_cols=182  Identities=27%  Similarity=0.408  Sum_probs=165.1

Q ss_pred             CCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             445576121577---55211232236768769999972410100001222345654455543334554455666554655
Q gi|254780374|r   56 STKKSYSLWRDS---HAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNY  132 (238)
Q Consensus        56 ~~~~~gSL~~~~---~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (238)
                      ....+||||+.+   +.+||+|+||++|||||||+|.|+++|+++++++.+|+++.+.+++..++...... .....++.
T Consensus        46 ~~~~~Gsiyq~~~~g~~~Lf~D~RA~~VGDilTV~i~E~~~Ask~~~t~~~r~~s~~~~~~~~~~~~~~~~-~~~~~~~~  124 (230)
T PRK12700         46 SARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGVI-NDKLDTDI  124 (230)
T ss_pred             CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf             78999643357666754000666447899869999987344322045543545663436555665456655-66556565


Q ss_pred             CCCCCCCCCHHEECEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEE
Q ss_conf             55543211000000014899999999998079728997887798418879999997984776789973824205543999
Q gi|254780374|r  133 DGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARIS  212 (238)
Q Consensus       133 ~~~~~~~g~G~~~~~~~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~  212 (238)
                      +++++|+|+|+++|+++|+++|+|+|+||||||||+|+|||||++|+|.|+|+|+|||||+||+++|+|.|+|||||||+
T Consensus       125 ~~~~~f~G~G~~~~sn~ltgtItvtV~~VlpNGNL~I~GeK~v~vN~~~e~Ir~sGiVRP~DI~~~NtV~S~~IAdArI~  204 (230)
T PRK12700        125 SGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIE  204 (230)
T ss_pred             CCCCCCCCCCCEECCCEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEE
T ss_conf             55543356543001135899999999998669958999989999889889999999998788899986970033548999


Q ss_pred             EECEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             80203312334866689999985589
Q gi|254780374|r  213 YGGKGRTTELLRPPIGHQLIENLSPL  238 (238)
Q Consensus       213 y~g~G~~~d~~~~gwl~r~~~~i~Pl  238 (238)
                      |.|+|.++|+|+||||+|||++|||.
T Consensus       205 Y~G~G~l~d~q~~GWl~rff~~v~PF  230 (230)
T PRK12700        205 YRSKGVMDEVQTMGWLQRFFLIASPF  230 (230)
T ss_pred             ECCEECCCCCCCCCHHHHHHHHHCCC
T ss_conf             84301215211549999998861899


No 8  
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=446.96  Aligned_cols=211  Identities=27%  Similarity=0.354  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEE
Q ss_conf             99999985433672002568753667777664444564455544444445576121577--5521123223676876999
Q gi|254780374|r    9 LCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDS--HAALFKDSRALNVGDILTV   86 (238)
Q Consensus         9 l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~--~~~lf~D~RA~~VGDIiTV   86 (238)
                      .+++++|+||++...+..           .++    |.+.++ +++...+.+||||+++  +++||+|+||++|||||||
T Consensus        15 al~~l~LsGCa~~~~~p~-----------~~~----p~~~~~-~~~~~~~~~GSi~~~~~~~~~LF~D~RA~~VGDIiTV   78 (227)
T PRK12697         15 ALAALALAGCAQIPREPI-----------TQQ----PMTAQP-PMPPSMQAPGSIYNPGYAGRPLFEDQRPRNVGDILTI   78 (227)
T ss_pred             HHHHHHHHCCCCCCCCCC-----------CCC----CCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEE
T ss_conf             999999726567899998-----------889----878889-9987779997500587666600146654789996999


Q ss_pred             EEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECCCCC
Q ss_conf             99724101000012223456544555433345544556665546555554321100000001489999999999807972
Q gi|254780374|r   87 DIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGN  166 (238)
Q Consensus        87 ~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~VlpNGn  166 (238)
                      +|.|+++|+++++++.+|+++.+.+++....+.+.   .....++.+++++|+|+|+++|+++|+++|+|+|+|||||||
T Consensus        79 ~i~E~~~Asks~~t~~~r~~~~~~~~~~~~~l~~~---~~~~~~~~~~s~~f~G~G~~~~sn~ltgtItatV~~VLPNGN  155 (227)
T PRK12697         79 VIAENINATKSSGANTNRQGNTSFDVPTAGFLGGL---FNKANLSATGANKFAATGGASAANTFNGTITVTVTNVLPNGN  155 (227)
T ss_pred             EEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCC
T ss_conf             99981311120356535567744367654333665---665543555564245643200111588999999999877993


Q ss_pred             EEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf             899788779841887999999798477678997382420554399980203312334866689999985589
Q gi|254780374|r  167 LIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL  238 (238)
Q Consensus       167 L~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i~Pl  238 (238)
                      |+|+|+|+|++|+|.|+|+|+|||||+||++||||.|+|||||||+|.|+|.++|+|+||||+|||++|||.
T Consensus       156 LvI~GeK~v~vN~e~e~IrlsGvVRP~DI~~dNtV~S~~IAdArI~Y~G~G~l~d~q~~GWl~r~f~~i~PF  227 (227)
T PRK12697        156 LVVSGEKQMLINQGNEFVRFSGVVNPNTISGQNSVYSTQVADARIEYSAKGYINEAETMGWLQRFFLNIAPW  227 (227)
T ss_pred             EEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCCEEECCCCCCCHHHHHHHHHCCC
T ss_conf             999999999988987999999898778779998596005354799980202135222559999998864889


No 9  
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=100.00  E-value=0  Score=442.08  Aligned_cols=216  Identities=23%  Similarity=0.341  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCC
Q ss_conf             999999998543367200-2568753667777664444564455544444445576121577--------5521123223
Q gi|254780374|r    7 IVLCYSSLLFGCHSSISE-ITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDS--------HAALFKDSRA   77 (238)
Q Consensus         7 ~~l~~~~lL~GCas~~~~-~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~--------~~~lf~D~RA   77 (238)
                      +++++.++|+||+...++ ....|.            ..+  +|.++...+.+..||+|+..        +++||+|+||
T Consensus        22 ~~~~~~~~l~gC~~~~~~p~~~~p~------------~a~--p~~~~~~~p~~~~Gsiy~~~~~~~~~g~~~~LF~D~RA   87 (246)
T PRK12699         22 VLIVMLALVGGCSLPTPAPKVQQPM------------SAR--PPDLPLIPPSQGNGGIYQAAFDYQGRGRYHPLFEDRRA   87 (246)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCC------------CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999860446899987678875------------468--99755568888888602255444466654567576755


Q ss_pred             CCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEE
Q ss_conf             67687699999724101000012223456544555433345544556665546555554321100000001489999999
Q gi|254780374|r   78 LNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAI  157 (238)
Q Consensus        78 ~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~  157 (238)
                      ++|||||||+|.|+++|+++++++.+|+++.+.+++.+++....... ....++.+++++|+|+|+++|+++|+++|+|+
T Consensus        88 ~~VGDIlTV~I~EstsAsk~a~t~~sr~~s~~~~~~~~~G~~~~~~~-~~~~~~~~ss~~f~G~G~~~~sn~ltgtItat  166 (246)
T PRK12699         88 RQIGDTIIVLLNEKTNASKKSGSNAQRNGDISLSVPSFLGLPFKSIF-QDLDLEASSSNKFDGKGESSSNNNFTGTITVT  166 (246)
T ss_pred             CCCCCEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             54898599999973543221465536466635467421477643456-67675654454334642000103589999999


Q ss_pred             EEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHHCC
Q ss_conf             99980797289978877984188799999979847767899738242055439998020331233486668999998558
Q gi|254780374|r  158 VTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSP  237 (238)
Q Consensus       158 V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i~P  237 (238)
                      |+||||||||+|+|+|||+||+|+|+|+|+|||||+|| .||+|.|+|||||||+|.|+|.++|+|+||||+|||++|||
T Consensus       167 Vv~VLpNGNLvI~GeK~v~vN~e~e~IrlsGiVRP~DI-~dNtV~St~IAdArI~Y~G~G~i~d~q~~GWl~R~f~~i~P  245 (246)
T PRK12699        167 VVDILPNGNLLVSGEKQIGINQGHEFIRLSGVINPINV-INNTVSSIQVADARIEYRGNGYLDEAQTMGWLSRFFLSISP  245 (246)
T ss_pred             EEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHC-CCCEECHHEEEEEEEEECCCEEECCCCCCCHHHHHHHHHCC
T ss_conf             99987899889998799998898799999999783436-78708300125489998231112522255999999876189


Q ss_pred             C
Q ss_conf             9
Q gi|254780374|r  238 L  238 (238)
Q Consensus       238 l  238 (238)
                      .
T Consensus       246 F  246 (246)
T PRK12699        246 F  246 (246)
T ss_pred             C
T ss_conf             9


No 10 
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=100.00  E-value=0  Score=415.84  Aligned_cols=225  Identities=35%  Similarity=0.505  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99999999985433672002568753667777664444564455544444445576121577552112322367687699
Q gi|254780374|r    6 FIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRALNVGDILT   85 (238)
Q Consensus         6 l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA~~VGDIiT   85 (238)
                      ++++++..+|++|++   .+...|++.|+.++...... |.+.+.+..+......+|||..++++||+|+||++||||||
T Consensus         4 ~~~~~~l~~la~c~~---e~~~~p~~~p~~~~~~~a~~-~~~~~~p~~p~~~~~~~sl~~~~~~~Lf~D~RA~~vGDilT   79 (230)
T COG2063           4 LYALLALGLLAGCGT---ECAKVPPLSPIVPGATVAQP-PQPGPAPIQPGSIFQGYSLWNYGYQPLFEDRRASNVGDILT   79 (230)
T ss_pred             HHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE
T ss_conf             379999999987326---53168875546788542437-76555677887634543556733220122543256898799


Q ss_pred             EEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECC
Q ss_conf             99972410100001222345654455543334554--4556665546555554321100000001489999999999807
Q gi|254780374|r   86 VDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG--QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILE  163 (238)
Q Consensus        86 V~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~Vlp  163 (238)
                      |+|.|+++|++++++..+|+++....+....+...  ........ +...++++|+|+|+..|+|+|+++|||+|++|||
T Consensus        80 Vvi~E~~~As~~~~t~~~r~~~~~~~~~~~~g~~~~~~~~~d~~~-~~~~s~n~~~G~g~~~~s~~l~~tIta~V~~VLp  158 (230)
T COG2063          80 IVIQENTSASKSSSTNRSRKNSTGFGLTAVGGVLLGGNNGGDDSS-YETSSNNDFKGKGGAKRSESLTGTITATVVQVLP  158 (230)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf             999854520200232101236788672333120347556787024-2225886656775533234279999999999868


Q ss_pred             CCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHH
Q ss_conf             972899788779841887999999798477678997382420554399980203312334866689999985
Q gi|254780374|r  164 NGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENL  235 (238)
Q Consensus       164 NGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i  235 (238)
                      ||||+|+|+|||+||+|.|+|+|+|||||+||+.+|||.|+|||||||+|.|+|.++|.|+||||+|||+.+
T Consensus       159 NGNL~I~G~Kev~vN~~~e~i~vsGvVRP~DI~~~NtI~S~~IAdARI~Y~G~G~lse~q~~gwlq~~~~~l  230 (230)
T COG2063         159 NGNLVIEGEKEVRVNGEKEIIRVSGVVRPDDISGDNTISSTRIADARIEYGGRGYLSEAQQPGWLQRFFLAL  230 (230)
T ss_pred             CCCEEEEEEEEEEECCCEEEEEEEEEECHHCCCCCCEECCHHEEEEEEEECCCEEECCCCCCCHHHHHHHHC
T ss_conf             997899977999977844899994268601057777143101132589865725663466865899998529


No 11 
>pfam02107 FlgH Flagellar L-ring protein.
Probab=100.00  E-value=0  Score=407.39  Aligned_cols=178  Identities=35%  Similarity=0.537  Sum_probs=166.8

Q ss_pred             CCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44455761215775-52112322367687699999724101000012223456544555433345544556665546555
Q gi|254780374|r   55 DSTKKSYSLWRDSH-AALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYD  133 (238)
Q Consensus        55 ~~~~~~gSL~~~~~-~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (238)
                      ++.+.+||||+++. .+||+|+||++|||||||+|.|+++|+++++++.+|+++.+..++.+++...     ....++.+
T Consensus         3 ~~~~~~GSl~~~~~~~~lf~D~rA~~VGDivTV~i~E~~~A~~s~~t~~~r~~~~~~~~~~~~g~~~-----~~~~~~~~   77 (181)
T pfam02107         3 PPAPANGSLYQAGSARPLFEDRRARRVGDILTVVLSENTSASKSASTSTSRSSSISLGIPTLFGLGG-----LSLSLGAS   77 (181)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCC
T ss_conf             8988997532589866542455324589869999998044321145430334443315643257777-----66321346


Q ss_pred             CCCCCCCCHHEECEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEE
Q ss_conf             55432110000000148999999999980797289978877984188799999979847767899738242055439998
Q gi|254780374|r  134 GGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISY  213 (238)
Q Consensus       134 ~~~~~~g~G~~~~~~~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y  213 (238)
                      ++++|+|+|+++|+++|+++|+|+|++|||||||+|+|+|+|+||+|.|+|+|+|||||+||+++|+|.|++||||||+|
T Consensus        78 ~~~~~~G~G~~~~~~~lt~~ita~V~~VlpNGnLvI~G~K~i~vn~e~e~i~lsGiVRp~DI~~~NtV~S~~IAdA~I~y  157 (181)
T pfam02107        78 SSSSFKGSGSASQSNTLTGTITVTVTDVLPNGNLVIRGEKEVRVNQGDEYIRLSGIVRPEDISPDNTVSSTRIADARIEY  157 (181)
T ss_pred             CCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEE
T ss_conf             55434564305333069999999999986899899999999998998899999999998997999759600335589998


Q ss_pred             ECEEEECCCCCCCHHHHHHHHHCC
Q ss_conf             020331233486668999998558
Q gi|254780374|r  214 GGKGRTTELLRPPIGHQLIENLSP  237 (238)
Q Consensus       214 ~g~G~~~d~~~~gwl~r~~~~i~P  237 (238)
                      .|+|.++|+|+||||+|||+++||
T Consensus       158 ~G~G~l~d~~~~gwl~r~~~~i~P  181 (181)
T pfam02107       158 GGRGAIADAQQPGWLQRFFDSVWP  181 (181)
T ss_pred             ECEEEECCCCCCCHHHHHHHHHCC
T ss_conf             010523644367999999886683


No 12 
>PRK11627 hypothetical protein; Provisional
Probab=94.86  E-value=0.024  Score=34.70  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=18.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9117999999999985433672002
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISEI   25 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~~   25 (238)
                      |+|.+++.++..++|+||+++...+
T Consensus         1 ~mkk~~~~l~a~~lL~gCas~p~~l   25 (192)
T PRK11627          1 MLKKILFPLVALFMLAGCATPPTTL   25 (192)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             9287999999999998606997637


No 13 
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=91.49  E-value=0.29  Score=27.81  Aligned_cols=19  Identities=26%  Similarity=0.597  Sum_probs=17.5

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |++..++.++++++|+||+
T Consensus         1 ~~~~rll~l~~~l~L~gC~   19 (460)
T PRK09837          1 MSPCKLLPFCVALALTGCS   19 (460)
T ss_pred             CCHHHHHHHHHHHHHCCCC
T ss_conf             9757899999999982477


No 14 
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=90.98  E-value=0.22  Score=28.64  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |.|+..++++++++|+||++...
T Consensus         1 ~~r~~~~l~~~~llLsgCat~p~   23 (203)
T PRK00022          1 MFRLLRLLPLAALLLAGCASLPP   23 (203)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             90638999999999866148999


No 15 
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118   This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=90.43  E-value=0.16  Score=29.51  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=15.2

Q ss_pred             CCHHHHHHHHHHHH--HHHHCC
Q ss_conf             91179999999999--854336
Q gi|254780374|r    1 MYRYSFIVLCYSSL--LFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~l--L~GCas   20 (238)
                      |||+.+++++++++  |+||++
T Consensus         1 Mmr~~~L~~~~~~~f~LtGCsa   22 (174)
T TIGR02747         1 MMRLKVLLLLACVAFLLTGCSA   22 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9067899999999872002577


No 16 
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=90.19  E-value=0.4  Score=26.93  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=15.2

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCC
Q ss_conf             911799999999-998543367
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas~   21 (238)
                      |+|++++.++.+ ++|+||+..
T Consensus         6 ~~r~~~~~~l~~~~lLagC~~~   27 (488)
T PRK09915          6 LSRLLLCSILGSTTLISGCALV   27 (488)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCC
T ss_conf             7699999999999997526689


No 17 
>TIGR02722 lp_ uncharacterized lipoprotein; InterPro: IPR014094   Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby..
Probab=88.73  E-value=1  Score=24.46  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCC-CCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             17999999999985433672-00256875--366777--76644445644555444444455761215775521123223
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSSI-SEITGIPQ--MSPMGS--SLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRA   77 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~~-~~~~~~p~--~tp~~~--~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA   77 (238)
                      ++++++++++++|+||.... ......+.  ..|+.+  .......++....++.||....-   =|+.-..|.|+.-++
T Consensus         4 ~~l~~~~~~Al~L~GC~~~~~~y~~~~~~~~~~~~~~tl~~~~~d~~~~a~~~~~pPk~~~~---dwsm~~~P~v~~~~~   80 (215)
T TIGR02722         4 KILIFVALLALLLSGCVSQRVAYTDATDPQPVEPVTPTLGLSSTDLEPIANKMIQPPKVRKI---DWSMLSSPAVAQITP   80 (215)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCHHHH---HHHHHCCCCCCCCCC
T ss_conf             87899999999985468872665688756677760577668886723347651388741256---466526884022367


Q ss_pred             C-C--CCCEEEEEEEEC
Q ss_conf             6-7--687699999724
Q gi|254780374|r   78 L-N--VGDILTVDIRID   91 (238)
Q Consensus        78 ~-~--VGDIiTV~i~E~   91 (238)
                      . .  -+-||-|----|
T Consensus        81 ~~gv~~~~il~vd~i~N   97 (215)
T TIGR02722        81 GDGVETRPILLVDSIKN   97 (215)
T ss_pred             CCCCCCCCEEEEEEEEC
T ss_conf             78721267789851216


No 18 
>pfam06291 Lambda_Bor Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=88.53  E-value=0.43  Score=26.79  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=17.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             91179999999999854336720025
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISEIT   26 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~~~   26 (238)
                      |+|+.+... ++++|+||+++.-.+.
T Consensus         1 MKk~~~~~~-~allLtgCa~QT~~~~   25 (97)
T pfam06291         1 MKKMLFAAA-LALLITGCAQQTFTVG   25 (97)
T ss_pred             CHHHHHHHH-HHHHHCCCCCEEEEEC
T ss_conf             922599999-9999721330499935


No 19 
>PRK10449 heat-inducible protein; Provisional
Probab=88.17  E-value=0.76  Score=25.19  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=14.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |+|+ +.++++.++|+||++.
T Consensus         1 MKk~-l~l~~~~llLagC~s~   20 (140)
T PRK10449          1 MKKV-VALVALSLLMAGCVSS   20 (140)
T ss_pred             CCHH-HHHHHHHHHHHHCCCC
T ss_conf             9034-9999999999752389


No 20 
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=87.96  E-value=0.51  Score=26.30  Aligned_cols=23  Identities=17%  Similarity=0.315  Sum_probs=16.3

Q ss_pred             CEEEEEEEEEEEEEEECCCCCEE
Q ss_conf             00148999999999980797289
Q gi|254780374|r  146 RAEKLNLLIAAIVTAILENGNLI  168 (238)
Q Consensus       146 ~~~~l~~~isa~V~~VlpNGnL~  168 (238)
                      -...+.+.+-++|+..-|||.|+
T Consensus       132 lryni~tkv~i~I~A~~~~Gk~~  154 (204)
T COG3056         132 LRYNIDTKVDITITATAANGKMV  154 (204)
T ss_pred             EEECCCCEEEEEEEEECCCCCEE
T ss_conf             23302545889999973787155


No 21 
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=87.77  E-value=0.37  Score=27.15  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=14.0

Q ss_pred             CCHHHHH-HHHHHHHHHHHCCC
Q ss_conf             9117999-99999998543367
Q gi|254780374|r    1 MYRYSFI-VLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~-~l~~~~lL~GCas~   21 (238)
                      |+|.++. +++++++|+||++.
T Consensus         1 m~k~~~~~~l~~~l~lsgC~s~   22 (160)
T PRK09967          1 MIKHLVAPLIFTSLILTGCQSP   22 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9078999999999999845899


No 22 
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=87.10  E-value=0.62  Score=25.77  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=15.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             911799999999998543367200
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~   24 (238)
                      ||++++ .+..+++|+||+++..+
T Consensus         1 mK~lil-~l~~~l~L~gCa~~~~~   23 (215)
T pfam05643         1 MKPLIL-GLAAVLALSACQVQKAP   23 (215)
T ss_pred             CHHHHH-HHHHHHHHHHCCCCCCC
T ss_conf             931499-99999998623489998


No 23 
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=86.80  E-value=0.69  Score=25.46  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=18.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |++++..++++.+||+||++-
T Consensus         1 MkK~i~~il~~~llL~GCs~m   21 (304)
T pfam07901         1 MRKLIKLILIATLLLSGCSTT   21 (304)
T ss_pred             CCHHHHHHHHHHHHHCCCCCC
T ss_conf             901899999999997133445


No 24 
>PRK10760 murein hydrolase B; Provisional
Probab=86.80  E-value=1.4  Score=23.46  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=15.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             911799999999998543367200
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~   24 (238)
                      |+|++-+ +.++++|+||++...+
T Consensus         1 ~r~~~~~-~~~~~~l~~css~p~~   23 (357)
T PRK10760          1 KRRYVTL-LPLFVLLAACSSKPKP   23 (357)
T ss_pred             CCCHHHH-HHHHHHHHHHCCCCCC
T ss_conf             9404868-9999999985189999


No 25 
>pfam06474 MLTD_N MLTD_N.
Probab=86.22  E-value=1.2  Score=23.92  Aligned_cols=17  Identities=41%  Similarity=0.671  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHCCCCC
Q ss_conf             99999999854336720
Q gi|254780374|r    7 IVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         7 ~~l~~~~lL~GCas~~~   23 (238)
                      +++++++||+||.+...
T Consensus         5 ail~~alLLaGCQst~~   21 (93)
T pfam06474         5 AVLAAALLLVGCQSTQA   21 (93)
T ss_pred             HHHHHHHHHHHHCCCCC
T ss_conf             99999999998137999


No 26 
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=85.72  E-value=0.69  Score=25.48  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=14.3

Q ss_pred             CCH--HHHHHHHHHHHHHHHCCCC
Q ss_conf             911--7999999999985433672
Q gi|254780374|r    1 MYR--YSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r--~~l~~l~~~~lL~GCas~~   22 (238)
                      |+|  +++++++++++|+||++..
T Consensus         1 m~~~k~l~~~~~l~l~l~gCs~~~   24 (243)
T PRK10866          1 MTRMKYLVAAATLSLFLAGCSGSK   24 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             945899999999999998768998


No 27 
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=85.27  E-value=0.58  Score=25.95  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=14.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |+|++++.+++ ++|+||++..+
T Consensus         1 MrK~~~~all~-laL~gCAtt~~   22 (156)
T PRK13883          1 MRKILSLALLA-LALGGCATTSQ   22 (156)
T ss_pred             CHHHHHHHHHH-HHHHCCCCCCC
T ss_conf             92689999999-99703313578


No 28 
>PRK09810 entericidin A; Provisional
Probab=84.81  E-value=0.57  Score=25.99  Aligned_cols=21  Identities=43%  Similarity=0.684  Sum_probs=17.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |+|++.++++...+|+||.+.
T Consensus         2 mkrli~lil~~~~ll~gcnta   22 (41)
T PRK09810          2 MKRLIVLVLLASTLLTGCNTA   22 (41)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             389999999999998256212


No 29 
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=84.56  E-value=1.3  Score=23.82  Aligned_cols=20  Identities=25%  Similarity=0.399  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCC
Q ss_conf             11799999999998543367
Q gi|254780374|r    2 YRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         2 ~r~~l~~l~~~~lL~GCas~   21 (238)
                      +|++..+++++++|+||++.
T Consensus         4 ~k~~~~il~~al~l~GCs~~   23 (200)
T COG3417           4 MKIYASILLLALFLSGCSSE   23 (200)
T ss_pred             HHHHHHHHHHHHHHHHCCCC
T ss_conf             79999999999998411367


No 30 
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.23  E-value=1.1  Score=24.07  Aligned_cols=22  Identities=27%  Similarity=0.307  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             1799999999998543367200
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~~~~   24 (238)
                      |.+.++++++++|+||++-...
T Consensus         7 ~~~~~~~~~~~llaGCaslP~s   28 (590)
T PRK13616          7 KALAALLAVALLVAGCASLPSS   28 (590)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999986120368999


No 31 
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=83.65  E-value=1.7  Score=23.05  Aligned_cols=20  Identities=25%  Similarity=0.250  Sum_probs=13.7

Q ss_pred             CCHHHHHHHHHH-HHHHHHCC
Q ss_conf             911799999999-99854336
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas   20 (238)
                      |||+++.+.++. +.|+||..
T Consensus         1 MKk~~l~~~iasal~LagCGg   21 (792)
T TIGR03502         1 MKKLLLSLAIASALGLAGCGD   21 (792)
T ss_pred             CCHHHHHHHHHHHHHHHCCCC
T ss_conf             933789999999875004578


No 32 
>PRK10598 hypothetical protein; Provisional
Probab=81.37  E-value=1.1  Score=24.30  Aligned_cols=20  Identities=35%  Similarity=0.680  Sum_probs=15.0

Q ss_pred             CCHHHH-HHHHHHHHHHHHCC
Q ss_conf             911799-99999999854336
Q gi|254780374|r    1 MYRYSF-IVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l-~~l~~~~lL~GCas   20 (238)
                      |+|+.+ .+++++.+|+||++
T Consensus         1 mkk~~l~~~l~l~~llsGC~~   21 (186)
T PRK10598          1 MKKFLLAAALLVSGLLVGCNQ   21 (186)
T ss_pred             CCHHHHHHHHHHHHHHHCCCC
T ss_conf             912699999999999714353


No 33 
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=81.10  E-value=1.4  Score=23.60  Aligned_cols=23  Identities=30%  Similarity=0.532  Sum_probs=18.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |+|.++..+++.++|+||....+
T Consensus         1 mkr~Lla~la~~~llAgC~~~ed   23 (176)
T COG4314           1 MKRTLLAILAVTALLAGCRQAED   23 (176)
T ss_pred             CCHHHHHHHHHHHHHHHCCHHHC
T ss_conf             94037999999999875343113


No 34 
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=81.08  E-value=1.2  Score=23.88  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=18.4

Q ss_pred             CCH-HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             911-799999999998543367200
Q gi|254780374|r    1 MYR-YSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         1 M~r-~~l~~l~~~~lL~GCas~~~~   24 (238)
                      |+| +.+.+++++++|+||+..+.+
T Consensus         1 Mkktl~i~~ta~vliLs~C~~~~dd   25 (382)
T COG4851           1 MKKTLGIAATASVLILSGCFPFVDD   25 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9401558999999998611676687


No 35 
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=81.02  E-value=3.7  Score=20.86  Aligned_cols=57  Identities=18%  Similarity=0.238  Sum_probs=37.1

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCC--CCC----EEEHHEEEEEEEEEE
Q ss_conf             99999999807972899788779841887999999798477678--997----382420554399980
Q gi|254780374|r  153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVD--AHN----SVSYDKIAEARISYG  214 (238)
Q Consensus       153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~--~~N----tV~S~~iAda~I~y~  214 (238)
                      .+..+|+|+|||++..|+=+     |+..-.-.+||-+|-.-|.  ++.    .++-..+.-.||.|.
T Consensus         8 ~~~G~V~e~lpn~~F~V~Le-----ng~~v~a~~sGKmR~~~Iril~GD~V~vE~spYDltkGRIv~R   70 (72)
T PRK00276          8 EMEGTVLETLPNAMFRVELE-----NGHEVLAHISGKMRKNYIRILPGDKVTVELSPYDLTKGRITYR   70 (72)
T ss_pred             EEEEEEEEECCCCEEEEEEC-----CCCEEEEEECHHEEEEEEEECCCCEEEEEECCCCCCCEEEEEE
T ss_conf             99999999859988999978-----9999999974131101699758998999988667995789997


No 36 
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.83  E-value=1  Score=24.45  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=16.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             91179999999999854336720025
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISEIT   26 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~~~   26 (238)
                      |+|++|.++  .+.|+||++...++.
T Consensus         5 ~~r~~~~v~--lL~LagCaTaP~~~~   28 (197)
T COG4764           5 MMRLVFAVV--LLALAGCATAPSQVN   28 (197)
T ss_pred             HHHHHHHHH--HHHHHHCCCCCCCCC
T ss_conf             698999999--999703036876765


No 37 
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=80.59  E-value=3  Score=21.44  Aligned_cols=58  Identities=24%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf             1799999999998543367200256875366777766444456445554444444557612157-755211232236768
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRD-SHAALFKDSRALNVG   81 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~-~~~~lf~D~RA~~VG   81 (238)
                      ++-.++..++++|+||.+-.+.+...-               |.            ..-|+... ....+|--.-||.=|
T Consensus         8 ~~~~l~~~laflLsgC~tiPk~l~g~~---------------~~------------s~~s~~~~~~~~~~~~gq~aR~GG   60 (191)
T COG3065           8 KKGALIGTLAFLLSGCVTIPKALKGES---------------PT------------SQQSLVRVMSQPQLYVGQQARFGG   60 (191)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHCCCC---------------CC------------CHHHEEEECCCCCCCCCCEEEECC
T ss_conf             799999999999763035783126899---------------74------------222011002577652044235176


Q ss_pred             CEEEEE
Q ss_conf             769999
Q gi|254780374|r   82 DILTVD   87 (238)
Q Consensus        82 DIiTV~   87 (238)
                      -||.|.
T Consensus        61 kVvnv~   66 (191)
T COG3065          61 KVVNVI   66 (191)
T ss_pred             EEEEEE
T ss_conf             899876


No 38 
>PRK11138 outer membrane protein assembly complex subunit YfgL; Provisional
Probab=80.49  E-value=3.4  Score=21.10  Aligned_cols=19  Identities=26%  Similarity=0.293  Sum_probs=13.5

Q ss_pred             CHHHHHHHHHHHHHHHHCC
Q ss_conf             1179999999999854336
Q gi|254780374|r    2 YRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         2 ~r~~l~~l~~~~lL~GCas   20 (238)
                      +|+++..++.+.+|+||+.
T Consensus         4 ~~~~~~~l~~~~ll~gCs~   22 (394)
T PRK11138          4 RKLLLPGLLSVALLSGCSL   22 (394)
T ss_pred             HHHHHHHHHHHHHHHHCCC
T ss_conf             6779999999999865237


No 39 
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=80.31  E-value=2.5  Score=21.91  Aligned_cols=20  Identities=45%  Similarity=0.534  Sum_probs=13.5

Q ss_pred             CCHHHHH----HHHHHHHHHHHCC
Q ss_conf             9117999----9999999854336
Q gi|254780374|r    1 MYRYSFI----VLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~----~l~~~~lL~GCas   20 (238)
                      |+|..|.    .+.++++|+||+.
T Consensus         1 ~~~~~f~~~~a~l~~~llLaGCa~   24 (478)
T PRK11459          1 MNRDSFYAATASLPLFILLAGCAP   24 (478)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             997405888999999999837889


No 40 
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=80.16  E-value=1.1  Score=24.15  Aligned_cols=21  Identities=33%  Similarity=0.587  Sum_probs=14.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9117999999999985433672
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~   22 (238)
                      |+|++++.+++ ++|+||++..
T Consensus         1 Mkk~~~l~~~~-l~LagCas~~   21 (26)
T pfam08139         1 MKKLLLLLLAL-LLLAGCASXX   21 (26)
T ss_pred             CHHHHHHHHHH-HHHHCCCCCC
T ss_conf             96699999999-9982332001


No 41 
>pfam07273 DUF1439 Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.
Probab=79.59  E-value=1.3  Score=23.64  Aligned_cols=20  Identities=35%  Similarity=0.580  Sum_probs=15.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |+++.+++++++++|+||++
T Consensus         1 Mk~~~~~~~~l~~~LsgC~~   20 (177)
T pfam07273         1 MKKLLLLILLLVLLLSGCAS   20 (177)
T ss_pred             CCHHHHHHHHHHHHHHCCCC
T ss_conf             91489999999999715575


No 42 
>pfam06572 DUF1131 Protein of unknown function (DUF1131). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=79.44  E-value=1  Score=24.39  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |+.+.++++.+.++|+||++
T Consensus         1 ~~~~r~~l~~~~llL~GCst   20 (192)
T pfam06572         1 MKSLRLFLLALPLLLTGCST   20 (192)
T ss_pred             CCCHHHHHHHHHHHHHCCCC
T ss_conf             94301368776688606556


No 43 
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=78.82  E-value=1.8  Score=22.88  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=11.4

Q ss_pred             CCH--H-HHHHHHHHHHHHHHCC
Q ss_conf             911--7-9999999999854336
Q gi|254780374|r    1 MYR--Y-SFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r--~-~l~~l~~~~lL~GCas   20 (238)
                      |+|  + ++.+++++++|+||..
T Consensus         1 m~~k~~~li~ll~~~~lL~gC~~   23 (385)
T PRK09859          1 MNRRRKLLIPLLFCGAMLTACDD   23 (385)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             98206789999999999953799


No 44 
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=78.75  E-value=1.1  Score=24.20  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHH
Q ss_conf             61215775521123223676876999997241010
Q gi|254780374|r   61 YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAV   95 (238)
Q Consensus        61 gSL~~~~~~~lf~D~RA~~VGDIiTV~i~E~~~a~   95 (238)
                      -+||.   ..+|.|-+...-|++|+|.|.|.....
T Consensus        64 k~L~~---tg~F~dV~v~~~g~~L~~~V~E~P~I~   95 (801)
T PRK11067         64 RALFA---TGNFEDVRVLRDGDTLLVQVKERPTIA   95 (801)
T ss_pred             HHHHH---CCCCCEEEEEEECCEEEEEEEECCEEE
T ss_conf             99985---899524899971999999999577389


No 45 
>PRK10672 rare lipoprotein A; Provisional
Probab=78.39  E-value=4.8  Score=20.17  Aligned_cols=25  Identities=16%  Similarity=0.145  Sum_probs=17.4

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             9999999999807972899788779
Q gi|254780374|r  151 NLLIAAIVTAILENGNLIISGSQEV  175 (238)
Q Consensus       151 ~~~isa~V~~VlpNGnL~I~G~k~i  175 (238)
                      ++.+-+.++.|-|+|+|.=-|..-.
T Consensus       161 ~a~VrVe~I~vapdg~lsGpGt~gt  185 (369)
T PRK10672        161 NTKVRIDPIIVAQDGSLSGPGMAGT  185 (369)
T ss_pred             CCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf             7505787776357655356655453


No 46 
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=78.00  E-value=2  Score=22.51  Aligned_cols=20  Identities=25%  Similarity=0.386  Sum_probs=15.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCC
Q ss_conf             11799999999998543367
Q gi|254780374|r    2 YRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         2 ~r~~l~~l~~~~lL~GCas~   21 (238)
                      +|+.+++++++++|+||...
T Consensus         7 ~~~~l~~l~~~~~L~gC~~~   26 (385)
T PRK09578          7 RRLALAALVAAFALAGCGKG   26 (385)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999998167999


No 47 
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response .; GO: 0009847 spore germination, 0016020 membrane.
Probab=77.65  E-value=1.4  Score=23.55  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=15.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      +++.++++++++++|+||-.+
T Consensus         1 ~~~~~~~~~~~~~lL~GCwd~   21 (400)
T TIGR02887         1 KKLKILLLILALLLLTGCWDK   21 (400)
T ss_pred             CHHHHHHHHHHHHHHCCCCCC
T ss_conf             946678999999983266562


No 48 
>TIGR00752 slp outer membrane lipoprotein, Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane.
Probab=76.51  E-value=5.4  Score=19.84  Aligned_cols=62  Identities=24%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             79999999999854336720025687536677776644445644555444444455761215-77552112322367687
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWR-DSHAALFKDSRALNVGD   82 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~-~~~~~lf~D~RA~~VGD   82 (238)
                      .-++.+.++++|+||.+..+.+.+..+              |...            .|+=+ .....||--+.||.=|-
T Consensus         4 ~g~l~~~l~f~L~gC~~~P~~ikg~~q--------------P~~~------------~s~v~v~~qp~lyvg~~aRfGGK   57 (190)
T TIGR00752         4 KGLLITALAFLLTGCIAVPKAIKGERQ--------------PFSQ------------KSYVEVSSQPLLYVGQEARFGGK   57 (190)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCC--------------CCCC------------HHHHEECCCCCEEECCEEEECCE
T ss_conf             145688899887531467423455679--------------8620------------02321107997231105753775


Q ss_pred             EEEEEEEEC
Q ss_conf             699999724
Q gi|254780374|r   83 ILTVDIRID   91 (238)
Q Consensus        83 IiTV~i~E~   91 (238)
                      ||-|....+
T Consensus        58 vvnv~~~~~   66 (190)
T TIGR00752        58 VVNVTNLKN   66 (190)
T ss_pred             EEEEEECCC
T ss_conf             999876488


No 49 
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=75.44  E-value=1.7  Score=22.97  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=15.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |+++.+ +++..++|.||++..+
T Consensus         1 Mrk~~~-~~l~~~lLvGCsS~~~   22 (123)
T COG5633           1 MRKLCL-LSLALLLLVGCSSHQE   22 (123)
T ss_pred             CCEEHH-HHHHHHHHHCCCCCCC
T ss_conf             930038-9999999420478877


No 50 
>PRK11189 lipoprotein NlpI; Provisional
Probab=74.40  E-value=3.1  Score=21.34  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=11.9

Q ss_pred             CCH-HHHHHHHH-HHHHHHHCC
Q ss_conf             911-79999999-999854336
Q gi|254780374|r    1 MYR-YSFIVLCY-SSLLFGCHS   20 (238)
Q Consensus         1 M~r-~~l~~l~~-~~lL~GCas   20 (238)
                      |++ +.++.+++ +++|+||++
T Consensus         1 m~~~~r~~~~~~~~l~LsGC~s   22 (297)
T PRK11189          1 MKPFLRWCFVATAALLLAGCAS   22 (297)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCC
T ss_conf             9518999999999999986405


No 51 
>COG5510 Predicted small secreted protein [Function unknown]
Probab=73.62  E-value=2.4  Score=22.06  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=12.7

Q ss_pred             CCH---HHHHHHHHHHHHHHHCC
Q ss_conf             911---79999999999854336
Q gi|254780374|r    1 MYR---YSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r---~~l~~l~~~~lL~GCas   20 (238)
                      |+|   +++++++.+.+|+||.+
T Consensus         2 mk~t~l~i~~vll~s~llaaCNT   24 (44)
T COG5510           2 MKKTILLIALVLLASTLLAACNT   24 (44)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             04899999999999999988663


No 52 
>PRK10718 hypothetical protein; Provisional
Probab=73.31  E-value=1.3  Score=23.80  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=17.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |+.+.++++...++|+||++-
T Consensus         1 ~~~lr~~l~~~~llLsGCst~   21 (191)
T PRK10718          1 MKSLRLLLLALPLLLTGCSTM   21 (191)
T ss_pred             CCCCCCHHHHHHHHHHCCCCC
T ss_conf             985310231224764065666


No 53 
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.20  E-value=3.8  Score=20.76  Aligned_cols=29  Identities=17%  Similarity=0.155  Sum_probs=18.9

Q ss_pred             EEEEEEEEE--ECCCCCEEEEEEEEEEEECC
Q ss_conf             999999999--80797289978877984188
Q gi|254780374|r  152 LLIAAIVTA--ILENGNLIISGSQEVRVNDE  180 (238)
Q Consensus       152 ~~isa~V~~--VlpNGnL~I~G~k~i~vn~e  180 (238)
                      -++.++|.+  =-|.|+-+|+|+=.+.-.++
T Consensus       115 ~~l~vtv~rF~gry~g~a~i~g~W~L~~~~G  145 (190)
T COG3009         115 YKLNVTVQRFDGRYTGKAVISGEWRLLHDKG  145 (190)
T ss_pred             EEEEEEEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             7999999621573468548999999745666


No 54 
>CHL00010 infA translation initiation factor 1
Probab=73.12  E-value=5.7  Score=19.66  Aligned_cols=59  Identities=20%  Similarity=0.338  Sum_probs=39.3

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCC--CCC----EEEHHEEEEEEEEEECE
Q ss_conf             99999999807972899788779841887999999798477678--997----38242055439998020
Q gi|254780374|r  153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVD--AHN----SVSYDKIAEARISYGGK  216 (238)
Q Consensus       153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~--~~N----tV~S~~iAda~I~y~g~  216 (238)
                      .+..+|+|+|||+.+.|+=+     |+..-.-.+||-+|-.-|.  ++-    .++-..+--.||.|.-+
T Consensus         8 e~eG~V~e~Lpn~~F~V~Le-----ng~~Vla~~sGKmR~~~Iril~GD~V~VE~SpYDltkGRI~~R~k   72 (78)
T CHL00010          8 IMEGLVTESLPNGMFRVRLD-----NGDLVLGYISGKIRRNSIRILPGDRVKVELSPYDLTKGRIIYRLR   72 (78)
T ss_pred             EEEEEEEEECCCCEEEEEEC-----CCCEEEEEECCHHEECEEEECCCCEEEEEECCCCCCCEEEEEEEC
T ss_conf             99899999869988999978-----999999999805200318974899899998756788578999904


No 55 
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=73.11  E-value=3.6  Score=20.95  Aligned_cols=16  Identities=31%  Similarity=0.565  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999999854336
Q gi|254780374|r    5 SFIVLCYSSLLFGCHS   20 (238)
Q Consensus         5 ~l~~l~~~~lL~GCas   20 (238)
                      ++++++++++|+||+.
T Consensus         3 ~~~~~~~~~~l~gCs~   18 (377)
T TIGR03300         3 LALVIALAALLSGCSW   18 (377)
T ss_pred             CHHHHHHHHHHHHCCC
T ss_conf             3899999999855657


No 56 
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=72.65  E-value=1.7  Score=22.95  Aligned_cols=26  Identities=35%  Similarity=0.338  Sum_probs=16.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             911799999999998543367200256
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISEITG   27 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~~~~   27 (238)
                      |++ +++.+.+.++|+||++-+....+
T Consensus         1 mr~-i~l~l~v~lllSGC~SV~s~t~~   26 (80)
T COG5645           1 MRN-ILLSLMVLLLLSGCGSVISLTIP   26 (80)
T ss_pred             CCE-EHHHHHHHHHHCCCCEEEEECCC
T ss_conf             915-32789999983764103774268


No 57 
>PRK02944 OxaA-like protein precursor; Validated
Probab=72.18  E-value=4.1  Score=20.58  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=12.1

Q ss_pred             CCHHHHHHH---HHHHHHHHHCCC
Q ss_conf             911799999---999998543367
Q gi|254780374|r    1 MYRYSFIVL---CYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l---~~~~lL~GCas~   21 (238)
                      |+|...++.   .++++|+||+..
T Consensus         1 mkk~~~~~~~~~~~~~~lsgC~~~   24 (255)
T PRK02944          1 MKKKLGLLAMVVALMAILAGCSEV   24 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             928999999999999999624688


No 58 
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=72.08  E-value=6.6  Score=19.26  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=11.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |+.+.+.++  +++|+||+..
T Consensus         1 MR~lpi~ll--al~ltGCs~l   19 (133)
T PRK10781          1 MRALPICLL--ALMLTGCSML   19 (133)
T ss_pred             CCHHHHHHH--HHHHHCCCCC
T ss_conf             920899999--9998431344


No 59 
>PRK11443 hypothetical protein; Provisional
Probab=71.52  E-value=3.2  Score=21.23  Aligned_cols=18  Identities=28%  Similarity=0.519  Sum_probs=12.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |+++++.+++  +||+||..
T Consensus         1 Mk~~~~~~~~--lll~GCq~   18 (120)
T PRK11443          1 MKKFIAPLLA--LLVSGCQI   18 (120)
T ss_pred             CHHHHHHHHH--HHHHCCCC
T ss_conf             9158999999--99966678


No 60 
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=71.29  E-value=0.42  Score=26.80  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             EEEEEECCEEEEEEEEEECHHHCCCCCEEEH
Q ss_conf             7798418879999997984776789973824
Q gi|254780374|r  173 QEVRVNDEIRSLNVTGIVRPQDVDAHNSVSY  203 (238)
Q Consensus       173 k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S  203 (238)
                      +-++.-+....|=|.=+|..+|.=.+-++-+
T Consensus       127 ~P~R~~~~~~~~WIAP~vD~dd~~Hqp~~V~  157 (171)
T PRK13733        127 RPLRTGEQTAALWIAPYIDNQDVYHQPSSVF  157 (171)
T ss_pred             CCCCCHHHEEEEEEEEEECCCCCCCCCCEEE
T ss_conf             8742430003467740373788603675699


No 61 
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits,  the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=71.24  E-value=8  Score=18.75  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=27.3

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCC
Q ss_conf             99999999807972899788779841887999999798477678
Q gi|254780374|r  153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVD  196 (238)
Q Consensus       153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~  196 (238)
                      .+...|+|+||||++.|+=+     |+..-.-.+||-+|-.-|.
T Consensus         2 e~~G~V~e~lpn~~F~V~Le-----ng~~v~a~~sGKmr~~~Ir   40 (64)
T cd04451           2 EMEGVVTEALPNAMFRVELE-----NGHEVLAHISGKMRMNYIR   40 (64)
T ss_pred             EEEEEEEEECCCCEEEEEEC-----CCCEEEEEECCHHEEEEEE
T ss_conf             78899999879988999978-----9989999972330412698


No 62 
>COG5461 Type IV pili component [Cell motility and secretion]
Probab=70.99  E-value=5.4  Score=19.82  Aligned_cols=20  Identities=25%  Similarity=0.240  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEEEEEEEE
Q ss_conf             11232236768769999972
Q gi|254780374|r   71 LFKDSRALNVGDILTVDIRI   90 (238)
Q Consensus        71 lf~D~RA~~VGDIiTV~i~E   90 (238)
                      -|.|+-...--|+|+|.+--
T Consensus        74 gf~~~y~s~~a~~l~i~ip~   93 (224)
T COG5461          74 GFLDRYSSASADALHIQIPS   93 (224)
T ss_pred             HHHHHHHHCCCCCEEEECCC
T ss_conf             99987643257716998158


No 63 
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=68.62  E-value=9.1  Score=18.40  Aligned_cols=17  Identities=47%  Similarity=0.743  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             99999998543367200
Q gi|254780374|r    8 VLCYSSLLFGCHSSISE   24 (238)
Q Consensus         8 ~l~~~~lL~GCas~~~~   24 (238)
                      +|+.+++|+||.+...+
T Consensus         6 ~l~~~~ll~gcq~~~~~   22 (449)
T PRK10783          6 ILLASVLLVGCQSSKND   22 (449)
T ss_pred             HHHHHHHHHHCCCCCCC
T ss_conf             99999999725578888


No 64 
>PRK11548 hypothetical protein; Provisional
Probab=68.18  E-value=3.3  Score=21.14  Aligned_cols=21  Identities=14%  Similarity=0.134  Sum_probs=14.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |+.+....+++.++|+||+.-
T Consensus         3 ~k~l~~a~ll~~lllsgCS~~   23 (113)
T PRK11548          3 CKTLTAAAAVLLMLTAGCSTL   23 (113)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             578899999999998011578


No 65 
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=67.98  E-value=7.4  Score=18.95  Aligned_cols=21  Identities=33%  Similarity=0.426  Sum_probs=14.3

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCC
Q ss_conf             911799999999-998543367
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas~   21 (238)
                      |||+++.++++. ++|+||..-
T Consensus         1 MKk~~l~~~i~SAL~LaGCg~~   22 (269)
T pfam12262         1 MKKKFLALLLASALLLAGCGDD   22 (269)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCC
T ss_conf             9247999999998641115799


No 66 
>pfam11153 DUF2931 Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=67.79  E-value=3.6  Score=20.96  Aligned_cols=19  Identities=16%  Similarity=0.277  Sum_probs=13.9

Q ss_pred             EEEEEEEEEECCCCCEEEE
Q ss_conf             9999999998079728997
Q gi|254780374|r  152 LLIAAIVTAILENGNLIIS  170 (238)
Q Consensus       152 ~~isa~V~~VlpNGnL~I~  170 (238)
                      ..-.-.|....|+|+.+|-
T Consensus       129 ~~r~~~~~GLaPgG~v~vw  147 (202)
T pfam11153       129 CYRDNIVLGLAPGGKVVVW  147 (202)
T ss_pred             EEEEEEEEEECCCCEEEEE
T ss_conf             6354499997899889999


No 67 
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=67.61  E-value=3  Score=21.47  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCC
Q ss_conf             911799999999-998543367
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas~   21 (238)
                      |+++.+..++.+ ++|+||++.
T Consensus         3 ~kk~~~~~~~~~~l~lsGC~a~   24 (243)
T PRK13731          3 TKKLMMVALVSSTLALSGCGAM   24 (243)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHH
T ss_conf             3775799999999997156876


No 68 
>pfam08085 Entericidin Entericidin EcnA/B family. This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.
Probab=67.31  E-value=3.9  Score=20.74  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=11.5

Q ss_pred             CCHHHHHHHHHH---HHHHHHCC
Q ss_conf             911799999999---99854336
Q gi|254780374|r    1 MYRYSFIVLCYS---SLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~---~lL~GCas   20 (238)
                      |+|++.++++++   +.|+||.|
T Consensus         1 Mk~~~~~~~~l~~~~~~lagCNT   23 (42)
T pfam08085         1 MKKLIALLLALLLLALVLAGCNT   23 (42)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             92369999999999999861222


No 69 
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=66.14  E-value=5  Score=20.03  Aligned_cols=23  Identities=13%  Similarity=0.098  Sum_probs=16.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |+..+|...+.+.+|+||+++.+
T Consensus         1 ~~~~~l~aaa~~~~LaGCt~~d~   23 (109)
T PRK11251          1 NMAGILSAAAVLTMLAGCTAYDR   23 (109)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             90258899999999971447767


No 70 
>PRK12450 foldase protein PrsA; Reviewed
Probab=65.47  E-value=3.9  Score=20.71  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=13.4

Q ss_pred             CCHHHHHHH--HHHHHHHHHCCC
Q ss_conf             911799999--999998543367
Q gi|254780374|r    1 MYRYSFIVL--CYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l--~~~~lL~GCas~   21 (238)
                      |+++++.++  +.+++|+||.+.
T Consensus         4 mKK~~~~~~~~~svl~LaAC~s~   26 (309)
T PRK12450          4 MNKLITGVVTLATVVTLSACQSS   26 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999860589


No 71 
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PMID:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=64.88  E-value=3.3  Score=21.20  Aligned_cols=15  Identities=40%  Similarity=0.713  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             999999998543367
Q gi|254780374|r    7 IVLCYSSLLFGCHSS   21 (238)
Q Consensus         7 ~~l~~~~lL~GCas~   21 (238)
                      ++++++++|+||++.
T Consensus         5 ~~l~~~lllagC~s~   19 (146)
T TIGR03352         5 VLLAACLLLAGCSSA   19 (146)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             589999998532599


No 72 
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD; InterPro: IPR013361    Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known..
Probab=64.62  E-value=7.5  Score=18.92  Aligned_cols=79  Identities=23%  Similarity=0.214  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCC--CCCCCCCCC
Q ss_conf             99999999985433672002568753667777664444564455544444---4455761215775521--123223676
Q gi|254780374|r    6 FIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSD---STKKSYSLWRDSHAAL--FKDSRALNV   80 (238)
Q Consensus         6 l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~---~~~~~gSL~~~~~~~l--f~D~RA~~V   80 (238)
                      .+++.+.++|+||++..+..      .+-..+.+++...|..........   ..+..+-|-.+....|  |-+.--+.-
T Consensus         2 ~~~~a~~~~LagC~~~~P~~------~~~~~p~d~~~~~PI~v~~~~~~~~l~v~~~~~Gl~a~~~~~l~~~l~~~~~~~   75 (211)
T TIGR02522         2 VLLLALTALLAGCASTDPEI------DVGALPDDYRQRHPIAVQEESKSIDLLVAPGDRGLSASQQDQLLGFLKDWSRAS   75 (211)
T ss_pred             HHHHHHHHHHHHCCCCCCCC------CCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             78988999975305888755------534323453458873551177013455448887679888999999999986305


Q ss_pred             CCEEEEEEEE
Q ss_conf             8769999972
Q gi|254780374|r   81 GDILTVDIRI   90 (238)
Q Consensus        81 GDIiTV~i~E   90 (238)
                      -+.|+|.+..
T Consensus        76 ~~~l~~~~p~   85 (211)
T TIGR02522        76 AQTLVVVIPS   85 (211)
T ss_pred             CCEEEEECCC
T ss_conf             8537897588


No 73 
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=63.99  E-value=5.5  Score=19.76  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             7999999999985433672
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~~   22 (238)
                      .++++++++++|+||++..
T Consensus         3 ~~~~~~~~~~~l~sCs~~~   21 (235)
T TIGR03302         3 LLILLLALLLLLAGCSSKK   21 (235)
T ss_pred             HHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999998738997


No 74 
>PRK11023 hypothetical protein; Provisional
Probab=63.65  E-value=4.7  Score=20.18  Aligned_cols=21  Identities=38%  Similarity=0.475  Sum_probs=12.2

Q ss_pred             CCHHHHH-HHHHHHHHHHHCCC
Q ss_conf             9117999-99999998543367
Q gi|254780374|r    1 MYRYSFI-VLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~-~l~~~~lL~GCas~   21 (238)
                      |+.+..+ +++++++|+||++.
T Consensus         1 mk~~~~l~~l~~~~~L~GC~~~   22 (191)
T PRK11023          1 MKALSPLAVLISALLLQGCVAA   22 (191)
T ss_pred             CCHHHHHHHHHHHHHHCCCHHH
T ss_conf             9448899999999997268233


No 75 
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=63.49  E-value=11  Score=17.78  Aligned_cols=63  Identities=17%  Similarity=0.272  Sum_probs=43.4

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCC--CCC----EEEHHEEEEEEEEEECEEEE
Q ss_conf             999999999807972899788779841887999999798477678--997----38242055439998020331
Q gi|254780374|r  152 LLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVD--AHN----SVSYDKIAEARISYGGKGRT  219 (238)
Q Consensus       152 ~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~--~~N----tV~S~~iAda~I~y~g~G~~  219 (238)
                      -.+.-+|+|+|||+.+.|+=+     |+..-.-.+||-+|-.-|.  ++.    .++-..+--.||.|.-+..-
T Consensus         7 ie~eG~V~e~lpn~~FrV~Le-----Ng~~Vla~~sGKmR~~~IrIl~GD~V~VElSpYDltkGRIvyR~k~~~   75 (87)
T PRK12442          7 IELDGIVDEVLPDSRYRVTLE-----NGVEVGAYASGRMRKHRIRILAGDRVTLELSPYDLTKGRINFRHKDER   75 (87)
T ss_pred             EEEEEEEEEECCCCEEEEEEC-----CCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCC
T ss_conf             998789999879987999977-----998999998550133027776899899998877788748998847888


No 76 
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=63.42  E-value=11  Score=17.77  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             EEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEE
Q ss_conf             489999999999807972899788779841887999999798
Q gi|254780374|r  149 KLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIV  190 (238)
Q Consensus       149 ~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiV  190 (238)
                      .++....+.|+++... +=.|.|-+--.-+++.+.+.-.+||
T Consensus       203 gv~i~~~t~~~~L~~~-dG~V~GV~~~~~~g~~~~i~akaVI  243 (506)
T PRK06481        203 KIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVV  243 (506)
T ss_pred             CCEEEECCEEEEEEEC-CCCEEEEEEEECCCEEEEEECCEEE
T ss_conf             9879987783232305-8937899999689849999735699


No 77 
>PRK10722 hypothetical protein; Provisional
Probab=63.18  E-value=5.9  Score=19.57  Aligned_cols=20  Identities=20%  Similarity=0.178  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCC
Q ss_conf             79999999999854336720
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~~~   23 (238)
                      ..+++.+.+++|+||+....
T Consensus        17 ~~~~~~~~~l~L~gC~~~~~   36 (248)
T PRK10722         17 RLWIAGLPCLALAGCVQNAN   36 (248)
T ss_pred             HHHHHHHHHHHHHHCCCCCC
T ss_conf             99997149998863047888


No 78 
>PRK06033 hypothetical protein; Validated
Probab=61.93  E-value=12  Score=17.60  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             EEEECCCCCEEEEEEEEEEEECCEEEEEEEEEEC
Q ss_conf             9998079728997887798418879999997984
Q gi|254780374|r  158 VTAILENGNLIISGSQEVRVNDEIRSLNVTGIVR  191 (238)
Q Consensus       158 V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVR  191 (238)
                      =++++-||.|+=+||  +.+.++..-++++-||.
T Consensus        50 pvdi~vN~~liArGE--VvV~~d~~gVriTeIv~   81 (87)
T PRK06033         50 EVKILANNHPIASGV--VLVDRNRIAVEVKRMLP   81 (87)
T ss_pred             CEEEEECCEEEEEEE--EEEECCEEEEEEEEEEC
T ss_conf             489999999998885--99989888999999304


No 79 
>TIGR02269 TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269; InterPro: IPR011755   This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown..
Probab=61.65  E-value=5.7  Score=19.67  Aligned_cols=19  Identities=32%  Similarity=0.667  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999998543367200
Q gi|254780374|r    6 FIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         6 l~~l~~~~lL~GCas~~~~   24 (238)
                      +++.++++||.||++..+.
T Consensus         2 l~~~lla~ll~GCa~~~~~   20 (228)
T TIGR02269         2 LLLLLLALLLVGCASTAPK   20 (228)
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             5799889998752057877


No 80 
>TIGR02062 RNase_B exoribonuclease II; InterPro: IPR011804    This family consists of exoribonuclease II (RNase II), the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.; GO: 0003723 RNA binding, 0008859 exoribonuclease II activity, 0006401 RNA catabolic process.
Probab=60.46  E-value=4.6  Score=20.25  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=18.8

Q ss_pred             CCCCCCCCCCEEEEEEEECCHHHHC
Q ss_conf             2322367687699999724101000
Q gi|254780374|r   73 KDSRALNVGDILTVDIRIDDQAVFD   97 (238)
Q Consensus        73 ~D~RA~~VGDIiTV~i~E~~~a~~~   97 (238)
                      .--+-++|||+|+|+|.|=-...+|
T Consensus       635 kge~~YKi~D~~~v~LtEv~~~tRS  659 (664)
T TIGR02062       635 KGEVVYKIGDVIEVVLTEVREETRS  659 (664)
T ss_pred             EEEEEEEEEEEEEEEEEEEECCCCC
T ss_conf             1078986610699998454013450


No 81 
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=60.12  E-value=6.3  Score=19.40  Aligned_cols=20  Identities=25%  Similarity=0.517  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |+|++++++++ +++.+|.+.
T Consensus         1 Mkk~~~~~~~~-~~~~SCg~~   20 (449)
T TIGR03525         1 MKKYLVFAALV-VLVYSCGSG   20 (449)
T ss_pred             CCHHHHHHHHH-HHHHHCCCC
T ss_conf             91248999999-987210589


No 82 
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=60.04  E-value=7.4  Score=18.95  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=13.6

Q ss_pred             CCHHHHHHHHHH-HHHHHHCC
Q ss_conf             911799999999-99854336
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas   20 (238)
                      |++.++.+.+++ +.|+||++
T Consensus         1 MKK~~la~~~~svl~LaaC~~   21 (287)
T PRK03095          1 MKKAMLALAATSVIALSACGT   21 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHCCC
T ss_conf             907899999999999985168


No 83 
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family; InterPro: IPR003282 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia.   The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell  and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis . However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself, type III subunits in the outer membrane translocate secreted proteins through a channel-like structure.    One of the outer membrane protein subunit families, termed "K" here for nomenclature purposes, aids in the structural assembly of the invasion complex . It is also described as a lipoprotein. Members of this family include the Salmonella PrgK and SsaJ genes, MxiJ from Shigella, YscJ from Yersinia, and from the plant enteropathogens NolT (Rhizobium) and HrcJ Erwinia). The flagellar M-ring protein FliF also shares a low level of similarity, presumably due to evolution of the type III secretion system from the flagellar biosynthetic pathway.; GO: 0009306 protein secretion.
Probab=60.03  E-value=5.8  Score=19.63  Aligned_cols=18  Identities=22%  Similarity=0.377  Sum_probs=14.8

Q ss_pred             EEEEEEEEEEEEEECCCC
Q ss_conf             148999999999980797
Q gi|254780374|r  148 EKLNLLIAAIVTAILENG  165 (238)
Q Consensus       148 ~~l~~~isa~V~~VlpNG  165 (238)
                      ..+.|-|+|+|.=|||.-
T Consensus       125 s~IdGV~~ArVhVvlP~~  142 (203)
T TIGR02544       125 SQIDGVISARVHVVLPEN  142 (203)
T ss_pred             HHCCCEEEEEEEEEECCC
T ss_conf             017926866799972167


No 84 
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=59.79  E-value=7.1  Score=19.09  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=12.1

Q ss_pred             CCHHH-HHHHHHHHHHHHHCCC
Q ss_conf             91179-9999999998543367
Q gi|254780374|r    1 MYRYS-FIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~-l~~l~~~~lL~GCas~   21 (238)
                      |++.. +++.+++++|+||+..
T Consensus         4 ~~~~~~~l~~~As~LL~aC~~~   25 (206)
T COG3017           4 MKRLLFLLLALASLLLTACTLT   25 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7778789999999999756566


No 85 
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=59.69  E-value=9.2  Score=18.36  Aligned_cols=22  Identities=14%  Similarity=0.378  Sum_probs=12.1

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCCC
Q ss_conf             911799999999-9985433672
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas~~   22 (238)
                      ++++.-++++++ .+|.+|++..
T Consensus         1 lRsi~s~~L~~~~~fLvsC~gp~   23 (142)
T TIGR03042         1 LRSLASLLLVLLLTFLVSCSGPA   23 (142)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             97699999999999998838998


No 86 
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=58.84  E-value=8.2  Score=18.67  Aligned_cols=20  Identities=15%  Similarity=0.092  Sum_probs=12.7

Q ss_pred             CCHHHHHHH---HHHHHHHHHCC
Q ss_conf             911799999---99999854336
Q gi|254780374|r    1 MYRYSFIVL---CYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l---~~~~lL~GCas   20 (238)
                      |++.+++..   +.+++|+||++
T Consensus         1 MKKKl~~~~~~~~svl~LaaCs~   23 (310)
T PRK01326          1 MKKKLIAGAVTLLSVATLAACSK   23 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             90889999999999999987169


No 87 
>pfam07269 consensus
Probab=58.77  E-value=6.2  Score=19.44  Aligned_cols=19  Identities=21%  Similarity=0.424  Sum_probs=11.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9117999999999985433672
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~   22 (238)
                      |++.++++++   .|+||.+.-
T Consensus         1 MKy~ll~l~l---~LAgC~T~d   19 (55)
T pfam07269         1 MKYCLLLLIL---ALAGCQTND   19 (55)
T ss_pred             CHHHHHHHHH---HHHHCCCCC
T ss_conf             9014999999---987511467


No 88 
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=58.40  E-value=7.7  Score=18.85  Aligned_cols=14  Identities=14%  Similarity=0.145  Sum_probs=9.2

Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             99999854336720
Q gi|254780374|r   10 CYSSLLFGCHSSIS   23 (238)
Q Consensus        10 ~~~~lL~GCas~~~   23 (238)
                      +.+++|+||++...
T Consensus        14 ~~~l~LaACSS~~~   27 (173)
T PRK10802         14 LPVMAIAACSSNKN   27 (173)
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99999985579998


No 89 
>PRK02463 OxaA-like protein precursor; Provisional
Probab=58.23  E-value=10  Score=18.11  Aligned_cols=14  Identities=29%  Similarity=0.396  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999998543367
Q gi|254780374|r    8 VLCYSSLLFGCHSS   21 (238)
Q Consensus         8 ~l~~~~lL~GCas~   21 (238)
                      ++.++++|+||.+.
T Consensus        14 ~~~~~l~LsgC~~~   27 (307)
T PRK02463         14 ALSMLLTLTGCVGR   27 (307)
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             99999999634689


No 90 
>PRK10533 putative lipoprotein; Provisional
Probab=57.94  E-value=7.4  Score=18.98  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=14.6

Q ss_pred             CCHHHH-HHHHHHHHHHHHCCC
Q ss_conf             911799-999999998543367
Q gi|254780374|r    1 MYRYSF-IVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l-~~l~~~~lL~GCas~   21 (238)
                      |++..| +++-++++|++|++.
T Consensus         1 Mr~~~~~ll~PlallLSACttV   22 (171)
T PRK10533          1 MRYSKLALLLPCALLLSACTTV   22 (171)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9862038999999999872247


No 91 
>pfam05590 DUF769 Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.
Probab=57.87  E-value=12  Score=17.54  Aligned_cols=18  Identities=50%  Similarity=0.635  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             179999999999854336
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas   20 (238)
                      ++...++++.+||+||++
T Consensus         6 rL~~SllaAslLLagCSs   23 (279)
T pfam05590         6 RLSCSLLAASLLLAGCSS   23 (279)
T ss_pred             CHHHHHHHHHHHHHCCCC
T ss_conf             401699999999723788


No 92 
>pfam09533 DUF2380 Predicted lipoprotein of unknown function (DUF2380). This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=56.89  E-value=11  Score=17.90  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=14.6

Q ss_pred             CCH-HHHHHHHHHHHHHHHCCCCC
Q ss_conf             911-79999999999854336720
Q gi|254780374|r    1 MYR-YSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r-~~l~~l~~~~lL~GCas~~~   23 (238)
                      |++ +.+.++++++++.||++..+
T Consensus         1 ~r~~l~~~l~vLal~~~GCasaa~   24 (220)
T pfam09533         1 MRRALVLWLLVLALLWVGCASAAP   24 (220)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             906899999999999845015789


No 93 
>pfam06604 consensus
Probab=56.34  E-value=15  Score=17.00  Aligned_cols=17  Identities=24%  Similarity=0.231  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             79999999999854336
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas   20 (238)
                      .+|+.+.++++|+||.+
T Consensus         7 ~~~~~~~~v~~laGCq~   23 (181)
T pfam06604         7 GLVAGLAAVLVLAGCQR   23 (181)
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             78999999999734453


No 94 
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=56.09  E-value=11  Score=17.83  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=15.2

Q ss_pred             CCHHHHHHHHHHH--HHHHHCCCCCC
Q ss_conf             9117999999999--98543367200
Q gi|254780374|r    1 MYRYSFIVLCYSS--LLFGCHSSISE   24 (238)
Q Consensus         1 M~r~~l~~l~~~~--lL~GCas~~~~   24 (238)
                      |+|+++.+++++.  .|.||..+.+.
T Consensus         2 mkk~~~~~~~a~g~~~l~GC~~r~~~   27 (234)
T PRK10523          2 MKKAILTALAAVGLFALMGCNNRAEV   27 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             05899999999999987634665434


No 95 
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940    This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=56.08  E-value=1.9  Score=22.66  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             HHEEEEEEEEEECEEEECCCCCCCHHHHHHHHH
Q ss_conf             420554399980203312334866689999985
Q gi|254780374|r  203 YDKIAEARISYGGKGRTTELLRPPIGHQLIENL  235 (238)
Q Consensus       203 S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i  235 (238)
                      -+=||..|+-|.|||.|++-|+.  |.+.|..|
T Consensus       199 DSI~alFRVDfsGRGELseRQQK--L~~~l~~L  229 (314)
T TIGR02238       199 DSIMALFRVDFSGRGELSERQQK--LAQMLSRL  229 (314)
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHH--HHHHHHHH
T ss_conf             20255413121257640278899--99999998


No 96 
>pfam06788 UPF0257 Uncharacterized protein family (UPF0257).
Probab=55.48  E-value=7.9  Score=18.79  Aligned_cols=21  Identities=24%  Similarity=0.567  Sum_probs=13.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9117999999999985433672
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~   22 (238)
                      |+|..++.++ +++|+||.-..
T Consensus         1 ~k~~~~~~~l-a~~LsgCD~~~   21 (236)
T pfam06788         1 VKKYLLVMLL-ALVLTGCDNPD   21 (236)
T ss_pred             CCCHHHHHHH-HHHEECCCCCC
T ss_conf             9401368878-77212557888


No 97 
>COG3126 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.84  E-value=16  Score=16.85  Aligned_cols=83  Identities=23%  Similarity=0.202  Sum_probs=43.5

Q ss_pred             CCH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             911-7999999999985433672002568753667777664444564455544444445576121577552112322367
Q gi|254780374|r    1 MYR-YSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRALN   79 (238)
Q Consensus         1 M~r-~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA~~   79 (238)
                      |+. .+.+.++++++|++|+....++     ++|.  .        ...+.........       -.+.-||..+-|.-
T Consensus         1 Mk~~~~~~g~~~~~~La~c~~~~~~~-----~~p~--~--------~~~~~~~~~a~~s-------v~G~V~yReriALP   58 (158)
T COG3126           1 MKLVHIPIGLLAAILLAACASKSADI-----PAPA--S--------LTATQQSAAAQKS-------VSGTVLYRERIALP   58 (158)
T ss_pred             CCCEEHHHHHHHHHHHHHCCCCCCCC-----CCCC--E--------EECCCCCCCCCCC-------CCCCEEEEEEECCC
T ss_conf             97032146789999987531245678-----8863--0--------3124544243322-------12416998875179


Q ss_pred             CCCEEEEEEEECCHHHHCCCCCCCCC
Q ss_conf             68769999972410100001222345
Q gi|254780374|r   80 VGDILTVDIRIDDQAVFDNQTGRSRN  105 (238)
Q Consensus        80 VGDIiTV~i~E~~~a~~~~~~~~~r~  105 (238)
                      .|-.|||.+..-+-|-.-+..-.+++
T Consensus        59 p~AvltV~L~DvSlADaPsrvla~~t   84 (158)
T COG3126          59 PGAVLTVTLSDVSLADAPSRVLAEQT   84 (158)
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHE
T ss_conf             99789999975121247367665432


No 98 
>PRK11372 lysozyme inhibitor; Provisional
Probab=54.84  E-value=8.9  Score=18.46  Aligned_cols=18  Identities=33%  Similarity=0.912  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |+++  ++.++.++|+||+-
T Consensus         3 MKkl--l~~~~~llLsGCs~   20 (109)
T PRK11372          3 MKKL--LIICLPVLLTGCSA   20 (109)
T ss_pred             HHHH--HHHHHHHHHHCCCC
T ss_conf             4889--99999999704543


No 99 
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=54.02  E-value=9.3  Score=18.34  Aligned_cols=20  Identities=15%  Similarity=0.464  Sum_probs=11.7

Q ss_pred             CCHHHHHHHHH---HHHHHHHCC
Q ss_conf             91179999999---999854336
Q gi|254780374|r    1 MYRYSFIVLCY---SSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~---~~lL~GCas   20 (238)
                      |+|.++++.++   +++|+||++
T Consensus         1 m~~r~~lia~~~a~~l~lsgC~t   23 (219)
T PRK10510          1 MKKRVYLIAAIVSGALAVSGCTT   23 (219)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             94268999999999987413567


No 100
>PRK10397 hypothetical protein; Provisional
Probab=53.72  E-value=8.9  Score=18.47  Aligned_cols=18  Identities=28%  Similarity=0.431  Sum_probs=12.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |+++++...++  .|+||+.
T Consensus         1 mkk~~~~g~~l--~LsGCa~   18 (137)
T PRK10397          1 MKKLAIAGALM--LLAGCAE   18 (137)
T ss_pred             CCHHHHHHHHH--HHHCCCC
T ss_conf             91246778999--9735324


No 101
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=53.08  E-value=11  Score=17.87  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=14.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9117999999999985433672002
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISEI   25 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~~   25 (238)
                      |++.++++++++.||.+|++.....
T Consensus         1 ~~~k~~~~~~~~~~l~~c~~~~~~~   25 (360)
T PRK11671          1 MMKKYLALALIAPLLISCSSSKKGD   25 (360)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9146889999999998710468887


No 102
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=52.87  E-value=15  Score=17.07  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=13.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9117999999999985433672
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~   22 (238)
                      |+|+ +..+++.++|+||.+..
T Consensus         1 mr~l-l~~~i~a~~lsgCqta~   21 (144)
T PRK13835          1 MRRL-LAACILALLLSGCQTAT   21 (144)
T ss_pred             CHHH-HHHHHHHHHHHHCCCCC
T ss_conf             9559-99999999864041368


No 103
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
Probab=52.77  E-value=17  Score=16.64  Aligned_cols=22  Identities=32%  Similarity=0.375  Sum_probs=11.9

Q ss_pred             CCH--HHHHHHHHHHHHHHHCCCC
Q ss_conf             911--7999999999985433672
Q gi|254780374|r    1 MYR--YSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r--~~l~~l~~~~lL~GCas~~   22 (238)
                      |.+  ..+..+++.++++||++..
T Consensus         1 M~~~~~a~~~l~al~~~sgCsss~   24 (159)
T COG3521           1 MNSSRKAVLALFALLVLSGCSSSK   24 (159)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             942577899999999852412588


No 104
>pfam10671 TcpQ Toxin co-regulated pilus biosynthesis protein Q. The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ, and the TcpQ is required for proper localisation of TcpC to the outer membrane.
Probab=52.59  E-value=4.5  Score=20.36  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=17.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9117999999999985433672
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~   22 (238)
                      |+|-.++..|++++++||++-.
T Consensus         1 mkknyii~~~iaii~sgcssie   22 (178)
T pfam10671         1 MKKNYIIGACIAIILSGCSSIE   22 (178)
T ss_pred             CCCCEEEHHHHHHHHCCCCCHH
T ss_conf             9752431545999965763023


No 105
>COG4380 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.41  E-value=15  Score=16.97  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             1799999999998543367200
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~~~~   24 (238)
                      +.+++.+..+++|+||+.+..+
T Consensus         2 ~~l~~~~~~vl~ls~c~~~~a~   23 (216)
T COG4380           2 KPLILGLAAVLALSACQVQKAP   23 (216)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             0689999999998653577676


No 106
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360    Proteins in this entry are designated PilF  and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=51.47  E-value=11  Score=17.78  Aligned_cols=15  Identities=27%  Similarity=0.379  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999985433672
Q gi|254780374|r    8 VLCYSSLLFGCHSSI   22 (238)
Q Consensus         8 ~l~~~~lL~GCas~~   22 (238)
                      .++++++|+||++..
T Consensus         2 ~l~~~~~l~GC~~~~   16 (247)
T TIGR02521         2 ALVLLLALTGCVTTP   16 (247)
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             887846785157887


No 107
>PRK02939 hypothetical protein; Reviewed
Probab=51.33  E-value=14  Score=17.21  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=13.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |++..++.+ ++++|+||--...
T Consensus         1 ~k~~~~~~~-l~~~L~gCD~~~a   22 (236)
T PRK02939          1 MKYKLLPCL-LAILLTGCDRTEV   22 (236)
T ss_pred             CCCHHHHHH-HHHHHHCCCCCCC
T ss_conf             962347899-9998762688887


No 108
>COG3218 ABC-type uncharacterized transport system, auxiliary component [General function prediction only]
Probab=51.28  E-value=17  Score=16.65  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=16.0

Q ss_pred             CCCEEEHHEEEEEEEEEECEEE
Q ss_conf             9973824205543999802033
Q gi|254780374|r  197 AHNSVSYDKIAEARISYGGKGR  218 (238)
Q Consensus       197 ~~NtV~S~~iAda~I~y~g~G~  218 (238)
                      .|++|-++|+-++.+-..|+|.
T Consensus       157 ~n~~v~A~r~F~a~~pv~g~~~  178 (205)
T COG3218         157 RNGTVRASRVFRASQPVDGKGN  178 (205)
T ss_pred             CCCCEEEEEEEEEEECCCCCCC
T ss_conf             8886888777898601468983


No 109
>pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.).
Probab=51.02  E-value=8.8  Score=18.48  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=12.7

Q ss_pred             CCHHHHHHHH-HHHHHHHHCC
Q ss_conf             9117999999-9999854336
Q gi|254780374|r    1 MYRYSFIVLC-YSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~-~~~lL~GCas   20 (238)
                      |+|++++.++ +.++|+||-.
T Consensus         1 Mkki~~~~i~~~~~~L~aCQa   21 (46)
T pfam02402         1 MKKILFIGILLLTVLLSACQA   21 (46)
T ss_pred             CCEEEEHHHHHHHHHHHHHHH
T ss_conf             924201399999999998555


No 110
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=50.61  E-value=13  Score=17.42  Aligned_cols=22  Identities=27%  Similarity=0.609  Sum_probs=18.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9117999999999985433672
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~   22 (238)
                      |.++.++..+++++|.+|.+..
T Consensus         2 ~~~~~~~a~~~~lll~ac~~~~   23 (320)
T COG4607           2 MLRLLYLAACVALLLTACSPNS   23 (320)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCC
T ss_conf             4121699999999998726786


No 111
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=50.35  E-value=11  Score=17.94  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=12.6

Q ss_pred             CCHHHHHHHHHH--HHHHHHCCC
Q ss_conf             911799999999--998543367
Q gi|254780374|r    1 MYRYSFIVLCYS--SLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~--~lL~GCas~   21 (238)
                      |+++++.+.+++  +.|+||++.
T Consensus         5 MKK~~l~~~~~~~~l~LaaCss~   27 (298)
T PRK04405          5 MKKWALAAASAGLLLSLAGCSSN   27 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             89999999999999999871799


No 112
>PRK13613 lipoprotein LpqB; Provisional
Probab=50.26  E-value=14  Score=17.24  Aligned_cols=20  Identities=35%  Similarity=0.418  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             17999999999985433672
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~~   22 (238)
                      |..-++-|.+++|+||++-.
T Consensus         2 ~~~~~~~~~~vllaGCasiP   21 (603)
T PRK13613          2 RAAAYTGCGAVLLAGCASMP   21 (603)
T ss_pred             CHHHHHHHHHHEEECCCCCC
T ss_conf             06665452440210113699


No 113
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=50.22  E-value=19  Score=16.38  Aligned_cols=30  Identities=20%  Similarity=0.132  Sum_probs=17.6

Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCEEE
Q ss_conf             999999980797289978877984188799
Q gi|254780374|r  154 IAAIVTAILENGNLIISGSQEVRVNDEIRS  183 (238)
Q Consensus       154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~~  183 (238)
                      .=|-+-+-..+=-|.|+|+=.|++-++.+.
T Consensus       164 ELaW~~dpvD~FfLqIQGSGrv~l~DG~~l  193 (362)
T PRK11162        164 ELAYSNSLIDNFIMEVQGSGYVDFGDGDPL  193 (362)
T ss_pred             EEEEECCHHHHHHEEECCCEEEECCCCCEE
T ss_conf             699848867645365417479984899889


No 114
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=49.91  E-value=16  Score=16.79  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=17.3

Q ss_pred             CCHHHHHHHHHHHH-HHHHCCCCCCCC
Q ss_conf             91179999999999-854336720025
Q gi|254780374|r    1 MYRYSFIVLCYSSL-LFGCHSSISEIT   26 (238)
Q Consensus         1 M~r~~l~~l~~~~l-L~GCas~~~~~~   26 (238)
                      |+-..++..|+.++ |+||+++....-
T Consensus         1 mk~f~~~~~~~~~~~LagC~~~~~~~~   27 (297)
T COG4785           1 MKPFLRWCFVATALTLAGCSNQNETFW   27 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             960477899999998775304667410


No 115
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein,  YhcN/YlaJ family; InterPro: IPR014247   This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain. .
Probab=49.66  E-value=9.8  Score=18.20  Aligned_cols=18  Identities=39%  Similarity=0.630  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHH--HHHCCCC
Q ss_conf             99999999998--5433672
Q gi|254780374|r    5 SFIVLCYSSLL--FGCHSSI   22 (238)
Q Consensus         5 ~l~~l~~~~lL--~GCas~~   22 (238)
                      ++++|+++++|  +||+-..
T Consensus         2 l~~~ll~~~~l~~tgC~~~~   21 (185)
T TIGR02898         2 LFIILLLLLLLLATGCTNAQ   21 (185)
T ss_pred             HHHHHHHHHHHHHHCCCCCC
T ss_conf             68899999999873134100


No 116
>PRK10838 spr putative outer membrane lipoprotein; Provisional
Probab=48.61  E-value=19  Score=16.43  Aligned_cols=18  Identities=22%  Similarity=0.364  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHCCCCC
Q ss_conf             999999999854336720
Q gi|254780374|r    6 FIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         6 l~~l~~~~lL~GCas~~~   23 (238)
                      +..++++++|++|++...
T Consensus        14 ~~~~~~~~~l~ac~~~~~   31 (188)
T PRK10838         14 IPAIAVAVLLSACSSNNT   31 (188)
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             179999998886338985


No 117
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.48  E-value=20  Score=16.21  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=19.8

Q ss_pred             CCCCCHHEECEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCE
Q ss_conf             321100000001489999999999807972899788779841887
Q gi|254780374|r  137 ASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEI  181 (238)
Q Consensus       137 ~~~g~G~~~~~~~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~  181 (238)
                      .|+=.|..++...+.+-|.+      |.|...|.--+.+..|.+.
T Consensus        97 ~~rlvGtm~~g~~~~A~i~~------~~~v~~V~vG~YlGqN~Gr  135 (170)
T COG3168          97 TFRLVGTLKSGQGVSALIEA------PGGVYRVRVGQYLGQNYGR  135 (170)
T ss_pred             HEEEEEEECCCCCEEEEEEC------CCCEEEEEECCEEECCCCE
T ss_conf             60367785278836899973------8926998501075024766


No 118
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=48.41  E-value=16  Score=16.93  Aligned_cols=20  Identities=25%  Similarity=0.272  Sum_probs=10.6

Q ss_pred             CCHHHH-H--HHHHHHHHHHHCC
Q ss_conf             911799-9--9999999854336
Q gi|254780374|r    1 MYRYSF-I--VLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l-~--~l~~~~lL~GCas   20 (238)
                      |++..+ +  .++.+++|+||+.
T Consensus         1 mkkK~i~~~~~~~svl~LaaC~~   23 (285)
T PRK03002          1 MRGKHIFIITALISILMLSACGQ   23 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             96018999999999999998457


No 119
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=48.23  E-value=17  Score=16.69  Aligned_cols=18  Identities=17%  Similarity=0.176  Sum_probs=10.6

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |||.+++++++++ +..|.
T Consensus         1 mmk~l~~~~~~~l-~~~~~   18 (293)
T PRK13861          1 MIKKLFLTLACLL-FAAIG   18 (293)
T ss_pred             CCHHHHHHHHHHH-HHHHH
T ss_conf             9089999999999-86126


No 120
>PRK13614 lipoprotein LpqB; Provisional
Probab=47.96  E-value=21  Score=16.16  Aligned_cols=15  Identities=13%  Similarity=0.308  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             999999998543367
Q gi|254780374|r    7 IVLCYSSLLFGCHSS   21 (238)
Q Consensus         7 ~~l~~~~lL~GCas~   21 (238)
                      ++++++++|+||++-
T Consensus        13 ll~~~~v~LagCasi   27 (573)
T PRK13614         13 LLVLLGVTLSACAQI   27 (573)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999999886540469


No 121
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=47.37  E-value=15  Score=17.03  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=16.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             911799999999998543367200
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~   24 (238)
                      |+|..+++++++++|..|.+.-++
T Consensus         1 m~~r~l~~~~~~~~~~~~~a~a~~   24 (288)
T TIGR03431         1 MLRRLILSLVAAFMLISSNAQAED   24 (288)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHCC
T ss_conf             908899999999999743224304


No 122
>pfam10447 EXOSC1 Exosome component EXOSC1/CSL4. This family of proteins are components of the exosome 3'-5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions.
Probab=46.84  E-value=21  Score=16.06  Aligned_cols=42  Identities=29%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             EEEEEEEEECCCC-CEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCC
Q ss_conf             9999999980797-2899788779841887999999798477678997
Q gi|254780374|r  153 LIAAIVTAILENG-NLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHN  199 (238)
Q Consensus       153 ~isa~V~~VlpNG-nL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~N  199 (238)
                      .+.|+|+.+.+.= +..|     +.+++..-.=.+.|+||-+||.+..
T Consensus         7 iV~arVtrv~~~~a~~~I-----l~v~~~~l~~~f~G~IR~~DVRate   49 (72)
T pfam10447         7 IVLARVTRVTPRQAYCEI-----LAVGGTALKETFKGIIRKQDVRATE   49 (72)
T ss_pred             EEEEEEEEECHHEEEEEE-----EEECCEECCCCEEEEEEHHHCCCCC
T ss_conf             999999997501579999-----9999998788555898947666564


No 123
>pfam06316 Ail_Lom Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=46.75  E-value=17  Score=16.68  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=17.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9117999999999985433672
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~   22 (238)
                      |+|+...+|+++++|++|+...
T Consensus         1 m~~~~~~~l~~~~~l~~~~~~a   22 (199)
T pfam06316         1 MRKLCAAILSAAICLAAAGTPA   22 (199)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCC
T ss_conf             9017789999999999727731


No 124
>PRK11260 cystine transporter subunit; Provisional
Probab=46.52  E-value=15  Score=16.96  Aligned_cols=20  Identities=15%  Similarity=0.183  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |.|.+|+.++.+.+++||++
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~   23 (264)
T PRK11260          4 LGRQALMGVMAVALVAGMSV   23 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             67999999999999998357


No 125
>COG3015 CutF Uncharacterized lipoprotein NlpE involved in copper resistance [Cell envelope biogenesis, outer membrane / Inorganic ion transport and metabolism]
Probab=45.93  E-value=14  Score=17.17  Aligned_cols=23  Identities=13%  Similarity=0.313  Sum_probs=16.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |+|.++.++++.+.|.||..+.+
T Consensus         2 vkk~i~tl~a~~l~l~gcnnr~~   24 (178)
T COG3015           2 VKKAIVTLMAVILTLMGCNNRAE   24 (178)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             07899999999999845776332


No 126
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=45.75  E-value=22  Score=15.95  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECH--HHCCCCCEE----EHHEEEEEEEEEE
Q ss_conf             999999999980797289978877984188799999979847--767899738----2420554399980
Q gi|254780374|r  151 NLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRP--QDVDAHNSV----SYDKIAEARISYG  214 (238)
Q Consensus       151 ~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp--~DI~~~NtV----~S~~iAda~I~y~  214 (238)
                      .+.+-++|+++|||+.+.|+=     -|+....-+|+|-.|-  -=|.++-.|    .-.+.--++|.|.
T Consensus         6 ~~e~~g~V~e~L~~~~f~v~~-----eng~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~~~d~~kg~I~~R   70 (75)
T COG0361           6 EIEMEGTVIEMLPNGRFRVEL-----ENGHERLAHISGKMRKNRIRILPGDVVLVELSPYDLTKGRIVYR   70 (75)
T ss_pred             CCEEEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEE
T ss_conf             428999999973897899994-----69969998825874400488579999999745665333558998


No 127
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=45.53  E-value=21  Score=16.14  Aligned_cols=21  Identities=10%  Similarity=0.039  Sum_probs=13.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             911799999999998543367
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~   21 (238)
                      |+|+++...+++++++.|+..
T Consensus         3 ~~k~l~~~~~~a~v~s~~a~~   23 (179)
T COG3470           3 MKKLLLSAAILASVFSAPAEG   23 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
T ss_conf             689999999999997410000


No 128
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=45.40  E-value=14  Score=17.24  Aligned_cols=17  Identities=29%  Similarity=0.311  Sum_probs=14.7

Q ss_pred             EEEEEEEEEEEEEECCC
Q ss_conf             14899999999998079
Q gi|254780374|r  148 EKLNLLIAAIVTAILEN  164 (238)
Q Consensus       148 ~~l~~~isa~V~~VlpN  164 (238)
                      ..+.|-+.|+|.=+||+
T Consensus       119 s~mDGVi~ArV~I~lp~  135 (246)
T COG4669         119 SKMDGVISARVHISLPE  135 (246)
T ss_pred             HHCCCEEEEEEEEECCC
T ss_conf             75676588889997577


No 129
>pfam11839 DUF3359 Protein of unknown function (DUF3359). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=44.59  E-value=16  Score=16.93  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=14.1

Q ss_pred             CCHHH-HHHHHHHHHH-HHHCCCCC
Q ss_conf             91179-9999999998-54336720
Q gi|254780374|r    1 MYRYS-FIVLCYSSLL-FGCHSSIS   23 (238)
Q Consensus         1 M~r~~-l~~l~~~~lL-~GCas~~~   23 (238)
                      |++++ |..+.+..+| .||++..+
T Consensus         1 mkkllk~s~i~laallaggcaslse   25 (97)
T pfam11839         1 MKKLLKFSAIALAALLAGGCASLSE   25 (97)
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             9348999999999999743123218


No 130
>pfam01298 Lipoprotein_5 Transferrin binding protein-like solute binding protein. This family of proteins are distantly related to other families of solute binding proteins.
Probab=44.57  E-value=23  Score=15.84  Aligned_cols=10  Identities=30%  Similarity=0.557  Sum_probs=7.0

Q ss_pred             HHHHHHHHCC
Q ss_conf             9999854336
Q gi|254780374|r   11 YSSLLFGCHS   20 (238)
Q Consensus        11 ~~~lL~GCas   20 (238)
                      +++||++|..
T Consensus        13 ~~~LLSAC~G   22 (589)
T pfam01298        13 AAGLLSACSG   22 (589)
T ss_pred             HHHHHHHHCC
T ss_conf             9999997346


No 131
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=44.22  E-value=16  Score=16.88  Aligned_cols=19  Identities=21%  Similarity=0.378  Sum_probs=13.5

Q ss_pred             CCCCCCCCEEEEEEEECCH
Q ss_conf             2236768769999972410
Q gi|254780374|r   75 SRALNVGDILTVDIRIDDQ   93 (238)
Q Consensus        75 ~RA~~VGDIiTV~i~E~~~   93 (238)
                      -..-..||.|||.-.-..-
T Consensus        83 ~~~P~~gd~V~~~Y~~~~l  101 (177)
T TIGR03516        83 GTTPEFGDLVTFEYDIRAL  101 (177)
T ss_pred             CCCCCCCCEEEEEEEEEEC
T ss_conf             8899999989999999976


No 132
>PRK05698 fliN flagellar motor switch protein; Validated
Probab=43.59  E-value=24  Score=15.74  Aligned_cols=35  Identities=31%  Similarity=0.515  Sum_probs=29.4

Q ss_pred             EEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHH
Q ss_conf             9998079728997887798418879999997984776
Q gi|254780374|r  158 VTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQD  194 (238)
Q Consensus       158 V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~D  194 (238)
                      =++|+=||.|+=+|+  +.+-++..=|||+-||.|.+
T Consensus       115 PvdI~VNg~liA~GE--VVVv~d~fGVRIteIisp~e  149 (155)
T PRK05698        115 PLDVLVNGTLIAHGE--VVVVNEKFGIRLTDVISPSE  149 (155)
T ss_pred             CEEEEECCEEEEEEE--EEEECCEEEEEEEEECCHHH
T ss_conf             548999999999886--99999977899998459899


No 133
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=43.56  E-value=24  Score=15.74  Aligned_cols=49  Identities=31%  Similarity=0.374  Sum_probs=35.4

Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCEEEE-EEEEEECHHHCCCCCE----EEHHEEEEEEEEEEC
Q ss_conf             9999999807972899788779841887999-9997984776789973----824205543999802
Q gi|254780374|r  154 IAAIVTAILENGNLIISGSQEVRVNDEIRSL-NVTGIVRPQDVDAHNS----VSYDKIAEARISYGG  215 (238)
Q Consensus       154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i-~isGiVRp~DI~~~Nt----V~S~~iAda~I~y~g  215 (238)
                      +-++|.+|+|||-.+             +++ .++|.|.+-+.++.-.    =.-.+-..|||-|.-
T Consensus         4 V~a~V~kV~~~Gl~~-------------~fl~~F~G~Vd~~HL~~~~~~~~~Y~~~~~v~ArIL~Vd   57 (66)
T cd05695           4 VNARVKKVLSNGLIL-------------DFLSSFTGTVDFLHLDPEKSSKSTYKEGQKVRARILYVD   57 (66)
T ss_pred             EEEEEEEECCCCEEE-------------EEECCEEEEEEHHHCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             999999981794899-------------965128999887676877687000467988999999998


No 134
>pfam12046 DUF3529 Protein of unknown function (DUF3529). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=43.49  E-value=13  Score=17.39  Aligned_cols=28  Identities=18%  Similarity=0.240  Sum_probs=11.7

Q ss_pred             EECEEEEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf             000014899999999998079728997887
Q gi|254780374|r  144 ISRAEKLNLLIAAIVTAILENGNLIISGSQ  173 (238)
Q Consensus       144 ~~~~~~l~~~isa~V~~VlpNGnL~I~G~k  173 (238)
                      +.|.|++...+-.  .+--+--.+.|+|+|
T Consensus       130 A~R~E~v~lkl~~--~~~~~~s~l~v~ahR  157 (173)
T pfam12046       130 ASRPEQVELKLVE--ADDDGGSDLRVRAHR  157 (173)
T ss_pred             CCCCCEEEEEEEE--CCCCCCCEEEEEECH
T ss_conf             7875018999984--689987369999639


No 135
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=43.07  E-value=15  Score=17.04  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=14.7

Q ss_pred             CCHHHHHHH-HHHHHHHHHCCC
Q ss_conf             911799999-999998543367
Q gi|254780374|r    1 MYRYSFIVL-CYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l-~~~~lL~GCas~   21 (238)
                      |+|..+++- +.++.|.||++.
T Consensus         1 M~k~~~avA~~~al~L~GCan~   22 (154)
T COG3133           1 MIKTALAVAALMALSLTGCANN   22 (154)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCC
T ss_conf             9425789999988740011058


No 136
>COG2980 RlpB Rare lipoprotein B [Cell envelope biogenesis, outer membrane]
Probab=43.06  E-value=22  Score=15.92  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=16.8

Q ss_pred             CCHHHHHHH-HHHHHHHHHCCCCCCCCCC
Q ss_conf             911799999-9999985433672002568
Q gi|254780374|r    1 MYRYSFIVL-CYSSLLFGCHSSISEITGI   28 (238)
Q Consensus         1 M~r~~l~~l-~~~~lL~GCas~~~~~~~~   28 (238)
                      |+++..+++ +++++|+||.=++......
T Consensus         1 M~~L~~~lL~~a~~~L~aCGFhLRg~~~i   29 (178)
T COG2980           1 MRKLKTLLLLAAVLLLAACGFHLRGTTQI   29 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHCCEEECCCCCC
T ss_conf             90058999999999973345343178889


No 137
>TIGR01845 outer_NodT efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; InterPro: IPR010131   Members of group are outer membrane lipoproteins from the NodT family of the RND (Resistance-Nodulation-cell Division) type efflux systems. These proteins work with an inner membrane ABC transporter ATPase and an adapter called a membrane fusion protein. Most members of this family are likely to export primarily small molecules rather than proteins, but are related to the type I protein secretion outer membrane proteins TolC and PrtF.; GO: 0005215 transporter activity, 0008289 lipid binding, 0006810 transport, 0016020 membrane.
Probab=42.81  E-value=19  Score=16.37  Aligned_cols=11  Identities=27%  Similarity=0.398  Sum_probs=8.3

Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999854336
Q gi|254780374|r   10 CYSSLLFGCHS   20 (238)
Q Consensus        10 ~~~~lL~GCas   20 (238)
                      +++++|+||+.
T Consensus         2 ~~a~~LsGCa~   12 (477)
T TIGR01845         2 VAALALSGCAV   12 (477)
T ss_pred             HHHHHHHHHCC
T ss_conf             78899985206


No 138
>TIGR02567 YscW type III secretion system chaperone YscW; InterPro: IPR013400    This entry is encoded within type III secretion operons. The protein has been characterised  as a chaperone for the outer membrane pore component YscC (IPR003522 from INTERPRO). YscW is a lipoprotein which is itself localized to the outer membrane and, it is believed, facilitates the oligomerisation and localization of YscC..
Probab=42.68  E-value=7.1  Score=19.07  Aligned_cols=13  Identities=54%  Similarity=0.641  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999998543367
Q gi|254780374|r    9 LCYSSLLFGCHSS   21 (238)
Q Consensus         9 l~~~~lL~GCas~   21 (238)
                      +++++||+||++.
T Consensus         2 l~~~lLL~GC~~s   14 (131)
T TIGR02567         2 LILLLLLTGCVSS   14 (131)
T ss_pred             HHHHHHHHCCCCC
T ss_conf             3541002100012


No 139
>PRK10796 LPS-assembly lipoprotein RlpB; Provisional
Probab=42.32  E-value=22  Score=15.94  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=14.4

Q ss_pred             CCHHHHHHHHHH-HHHHHHCCCCCCC
Q ss_conf             911799999999-9985433672002
Q gi|254780374|r    1 MYRYSFIVLCYS-SLLFGCHSSISEI   25 (238)
Q Consensus         1 M~r~~l~~l~~~-~lL~GCas~~~~~   25 (238)
                      |+.+..+++.++ ++++||.=++...
T Consensus         1 ~r~l~~l~l~lavll~agCGFhLRg~   26 (196)
T PRK10796          1 MRYLATLLLSLAVLVTAGCGWHLRGT   26 (196)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             95699999999999974767157689


No 140
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=41.78  E-value=21  Score=16.12  Aligned_cols=18  Identities=28%  Similarity=0.347  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             799999999998543367
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~   21 (238)
                      +++.+++++++.+||++.
T Consensus         8 ~i~~lll~lllva~C~~s   25 (310)
T COG4594           8 IILTLLLLLLLVAACSSS   25 (310)
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999999999771476


No 141
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=40.59  E-value=19  Score=16.45  Aligned_cols=18  Identities=39%  Similarity=0.307  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             799999999998543367
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~   21 (238)
                      .++..++..++|+||++.
T Consensus         7 ~l~Avvlg~lllAGc~s~   24 (78)
T COG4238           7 TLGAVVLGSLLLAGCSSN   24 (78)
T ss_pred             HHHHHHHHHHHHHHCCCH
T ss_conf             278999877999701108


No 142
>pfam11873 DUF3393 Domain of unknown function (DUF3393). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is typically between 188 to 206 amino acids in length. This domain is found associated with pfam01464.
Probab=40.42  E-value=22  Score=16.02  Aligned_cols=13  Identities=38%  Similarity=0.516  Sum_probs=8.0

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999985433672
Q gi|254780374|r   10 CYSSLLFGCHSSI   22 (238)
Q Consensus        10 ~~~~lL~GCas~~   22 (238)
                      ++++||+||+...
T Consensus         8 ~~~llL~~Cs~~~   20 (200)
T pfam11873         8 LILLLLSGCSSQF   20 (200)
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9999984157765


No 143
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=38.87  E-value=19  Score=16.34  Aligned_cols=21  Identities=10%  Similarity=0.124  Sum_probs=13.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCC
Q ss_conf             117999999999985433672
Q gi|254780374|r    2 YRYSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         2 ~r~~l~~l~~~~lL~GCas~~   22 (238)
                      +++++++++++++++||+...
T Consensus         6 ~~~~~~~~l~~~f~~~~~~~~   26 (211)
T COG2834           6 MKLLLALALLLLFLSACAQAG   26 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999988887745


No 144
>PRK11530 hypothetical protein; Provisional
Probab=38.82  E-value=17  Score=16.71  Aligned_cols=18  Identities=17%  Similarity=0.242  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             799999999998543367
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~   21 (238)
                      +.++++...++|+||+.+
T Consensus         3 ~~~~ll~sll~LsgCa~q   20 (176)
T PRK11530          3 LRLLLLGSLLSLSACAQQ   20 (176)
T ss_pred             EEHHHHHHHHHHHHCCCC
T ss_conf             003488899998642475


No 145
>PRK10175 hypothetical protein; Provisional
Probab=38.22  E-value=16  Score=16.81  Aligned_cols=20  Identities=40%  Similarity=0.522  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999854336720025
Q gi|254780374|r    7 IVLCYSSLLFGCHSSISEIT   26 (238)
Q Consensus         7 ~~l~~~~lL~GCas~~~~~~   26 (238)
                      ++.+.+++|+||.+-+.+..
T Consensus         5 ~~~~~~lllsGC~SIms~t~   24 (75)
T PRK10175          5 VVSIMVTLLSGCGSIISRTI   24 (75)
T ss_pred             HHHHHHHHHCCCHHHHCCCC
T ss_conf             88889999816424430557


No 146
>TIGR01781 Trep_dent_lipo Treponema denticola clustered lipoprotein; InterPro: IPR010103   This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighbouring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown..
Probab=38.02  E-value=24  Score=15.75  Aligned_cols=21  Identities=33%  Similarity=0.812  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             1799999999998543367200
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~~~~   24 (238)
                      |++|+++ +|+||..|......
T Consensus         7 KlIFIL~-LAvLLFSC~ke~ke   27 (463)
T TIGR01781         7 KLIFILM-LAVLLFSCKKEVKE   27 (463)
T ss_pred             HHHHHHH-HHHHHHCCCCCCCC
T ss_conf             6888999-99986047621133


No 147
>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333   Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in Gram-positive bacteria but which is in complex with subunits which utilise cytochrome a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cytochrome c as the oxidant . ; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006118 electron transport, 0016020 membrane.
Probab=37.66  E-value=14  Score=17.22  Aligned_cols=13  Identities=38%  Similarity=0.608  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999985433
Q gi|254780374|r    7 IVLCYSSLLFGCH   19 (238)
Q Consensus         7 ~~l~~~~lL~GCa   19 (238)
                      .++++.+||+||.
T Consensus         2 ~~~~~~~lLsGCN   14 (228)
T TIGR01433         2 SLILASLLLSGCN   14 (228)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             5778999861256


No 148
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=37.53  E-value=30  Score=15.15  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             EEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHH
Q ss_conf             9998079728997887798418879999997984776
Q gi|254780374|r  158 VTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQD  194 (238)
Q Consensus       158 V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~D  194 (238)
                      =++++-||.++=+|+  +.+-++..=+||+-||.|++
T Consensus        86 pvdI~VNg~liA~GE--vVvv~d~fGVRIteIvs~~e  120 (126)
T PRK08983         86 PLDVMVNGTLIAHGE--VVVVNDKFGIRLTDVISQTE  120 (126)
T ss_pred             CEEEEECCEEEEEEE--EEEECCEEEEEEEEECCHHH
T ss_conf             589999999999988--99999988999998459899


No 149
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family; InterPro: IPR005699    This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and Pectobacterium chrysanthemi, and the functionally uncharacterised E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport.
Probab=37.24  E-value=30  Score=15.12  Aligned_cols=15  Identities=33%  Similarity=0.607  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999999999854336
Q gi|254780374|r    6 FIVLCYSSLLFGCHS   20 (238)
Q Consensus         6 l~~l~~~~lL~GCas   20 (238)
                      ++.+++++.|+||.+
T Consensus        12 ~~~~~~~v~lsgCqt   26 (136)
T TIGR01004        12 VLSLLVVVLLSGCQT   26 (136)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999999998640478


No 150
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=36.97  E-value=24  Score=15.72  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             1799999999998543367
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~   21 (238)
                      ++++++.+++++++||++.
T Consensus         6 ~~~~~~~~~~~~~~g~~~~   24 (319)
T PRK10957          6 LYRLALLLLGLLLSGIAAA   24 (319)
T ss_pred             HHHHHHHHHHHHHCCCCCC
T ss_conf             8999999999997478755


No 151
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.73  E-value=29  Score=15.17  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=14.8

Q ss_pred             CCHHHH-HHHHHHHHHHHHCCCCCC
Q ss_conf             911799-999999998543367200
Q gi|254780374|r    1 MYRYSF-IVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         1 M~r~~l-~~l~~~~lL~GCas~~~~   24 (238)
                      |+|.++ .++++.+++.+|++..+.
T Consensus         1 ~mRvl~i~Lliis~fl~a~~s~~e~   25 (182)
T COG2143           1 VMRVLLIVLLIISLFLSACKSNNEK   25 (182)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             9001999999999999997178044


No 152
>PRK01622 OxaA-like protein precursor; Validated
Probab=36.51  E-value=31  Score=15.05  Aligned_cols=13  Identities=31%  Similarity=0.501  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999854336
Q gi|254780374|r    8 VLCYSSLLFGCHS   20 (238)
Q Consensus         8 ~l~~~~lL~GCas   20 (238)
                      ++.++++|+||+.
T Consensus        13 ~~~~~~~lsgc~~   25 (266)
T PRK01622         13 SLLLVFVLSGCSN   25 (266)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999954689


No 153
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=36.36  E-value=28  Score=15.34  Aligned_cols=17  Identities=35%  Similarity=0.407  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHCCCCC
Q ss_conf             99999999854336720
Q gi|254780374|r    7 IVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         7 ~~l~~~~lL~GCas~~~   23 (238)
                      +++++++.|+||++...
T Consensus         8 ~~~~~~~~l~~C~~~~~   24 (289)
T TIGR03659         8 LLALLSLGLTGCSSSKA   24 (289)
T ss_pred             HHHHHHHHHHHCCCCCC
T ss_conf             99999999843289987


No 154
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=36.19  E-value=26  Score=15.54  Aligned_cols=16  Identities=25%  Similarity=0.422  Sum_probs=11.5

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             9117999999999985
Q gi|254780374|r    1 MYRYSFIVLCYSSLLF   16 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~   16 (238)
                      |+|+++++++++++++
T Consensus         1 mkk~~~~~~~~~~~~~   16 (643)
T pfam10566         1 MKKLTIILLAFLLLIG   16 (643)
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             9502578999999997


No 155
>PRK07963 fliN flagellar motor switch protein FliN; Validated
Probab=36.09  E-value=31  Score=15.01  Aligned_cols=35  Identities=34%  Similarity=0.494  Sum_probs=29.3

Q ss_pred             EEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHH
Q ss_conf             9998079728997887798418879999997984776
Q gi|254780374|r  158 VTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQD  194 (238)
Q Consensus       158 V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~D  194 (238)
                      =++++-||.|+=+|+  +.+-++..=+||+-||.|++
T Consensus        96 pvdI~VNg~liA~GE--VVvv~dk~GVRIteIisp~e  130 (137)
T PRK07963         96 PLDILINGYLIAQGE--VVVVADKYGVRITDIITPSE  130 (137)
T ss_pred             CEEEEECCEEEEEEE--EEEECCEEEEEEEEECCHHH
T ss_conf             569999999999987--99999878899998559899


No 156
>PRK11281 potassium efflux protein KefA; Provisional
Probab=35.94  E-value=18  Score=16.48  Aligned_cols=13  Identities=31%  Similarity=0.733  Sum_probs=9.1

Q ss_pred             CCCCCCCCEEEEE
Q ss_conf             2236768769999
Q gi|254780374|r   75 SRALNVGDILTVD   87 (238)
Q Consensus        75 ~RA~~VGDIiTV~   87 (238)
                      -|..||||+|||-
T Consensus       935 ErPiRiGD~vTi~  947 (1107)
T PRK11281        935 ERPVRIGDTVTIG  947 (1107)
T ss_pred             CCCCCCCCEEEEC
T ss_conf             1671247668987


No 157
>PRK10929 hypothetical protein; Provisional
Probab=35.90  E-value=18  Score=16.47  Aligned_cols=12  Identities=25%  Similarity=0.764  Sum_probs=9.2

Q ss_pred             CCCCCCCCEEEE
Q ss_conf             223676876999
Q gi|254780374|r   75 SRALNVGDILTV   86 (238)
Q Consensus        75 ~RA~~VGDIiTV   86 (238)
                      -|..||||+|||
T Consensus       933 ErPiRiGD~VTi  944 (1109)
T PRK10929        933 EKPIRIGDTVTI  944 (1109)
T ss_pred             CCCCCCCCEEEE
T ss_conf             167124766898


No 158
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=35.79  E-value=32  Score=14.98  Aligned_cols=20  Identities=25%  Similarity=0.207  Sum_probs=11.8

Q ss_pred             CCHHHHHHHHHH--HHHHHHCC
Q ss_conf             911799999999--99854336
Q gi|254780374|r    1 MYRYSFIVLCYS--SLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~--~lL~GCas   20 (238)
                      |++.+...++++  +.|+||.-
T Consensus         1 mk~~~~s~~ala~l~sLA~CG~   22 (58)
T COG5567           1 MKNVFKSLLALATLFSLAGCGL   22 (58)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9048999999999999985266


No 159
>PRK13684 Ycf48-like protein; Provisional
Probab=35.69  E-value=32  Score=14.97  Aligned_cols=16  Identities=25%  Similarity=0.619  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999999854336
Q gi|254780374|r    5 SFIVLCYSSLLFGCHS   20 (238)
Q Consensus         5 ~l~~l~~~~lL~GCas   20 (238)
                      ++++++++++|+||.+
T Consensus        11 l~l~~~~~~~~~~c~~   26 (333)
T PRK13684         11 LLLLLALGLVLSGCST   26 (333)
T ss_pred             HHHHHHHHHHHCCCCC
T ss_conf             9999999986322356


No 160
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=34.83  E-value=25  Score=15.67  Aligned_cols=18  Identities=39%  Similarity=0.661  Sum_probs=13.6

Q ss_pred             EEEEEECCCCCEEEEEEE
Q ss_conf             999998079728997887
Q gi|254780374|r  156 AIVTAILENGNLIISGSQ  173 (238)
Q Consensus       156 a~V~~VlpNGnL~I~G~k  173 (238)
                      ..+..++++|||||.+..
T Consensus        87 ~~~~~L~d~GNlVl~~~~  104 (114)
T smart00108       87 NYVLVLLDDGNLVIYDSD  104 (114)
T ss_pred             CEEEEEECCCCEEEECCC
T ss_conf             779999479779998799


No 161
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=34.83  E-value=16  Score=16.83  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=13.0

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |+|-.++.++++++|.+|.
T Consensus         3 ~~~~~i~~~l~~~ll~SC~   21 (156)
T TIGR03511         3 LVRNSISFFLGACVLVSCT   21 (156)
T ss_pred             HHHHHHHHHHHHHHEEEEC
T ss_conf             6854499999999707638


No 162
>PRK11616 hypothetical protein; Provisional
Probab=34.82  E-value=31  Score=15.07  Aligned_cols=16  Identities=44%  Similarity=0.627  Sum_probs=11.4

Q ss_pred             HHHHHHCCCCCCCCCC
Q ss_conf             9985433672002568
Q gi|254780374|r   13 SLLFGCHSSISEITGI   28 (238)
Q Consensus        13 ~lL~GCas~~~~~~~~   28 (238)
                      ++++||++-+.+.++.
T Consensus        15 l~~sGCSSvMtHtG~~   30 (109)
T PRK11616         15 LLLSGCSSVMSHTGGK   30 (109)
T ss_pred             HHHCCCHHHHCCCCCC
T ss_conf             9875751230114798


No 163
>PRK10936 periplasmic sensory protein associated with the TorRS two-component regulatory system; Provisional
Probab=34.73  E-value=33  Score=14.87  Aligned_cols=24  Identities=21%  Similarity=0.065  Sum_probs=16.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             911799999999998543367200
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~~   24 (238)
                      |+|+++.++++.+++.+|++....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~   24 (340)
T PRK10936          1 MMRILLFLLLSLFLLSAFAADNLL   24 (340)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             932799999999999870467434


No 164
>pfam09158 MotCF Bacteriophage T4 MotA, C-terminal. Members of this family adopt a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. The beta-strands form a single anti-parallel beta-sheet and the three alpha-helices pack side-by-side onto one surface of the beta-sheet. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. The domain is a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end.
Probab=34.50  E-value=33  Score=14.85  Aligned_cols=20  Identities=30%  Similarity=0.267  Sum_probs=16.9

Q ss_pred             EEEEEECCCCCEEEEEEEEE
Q ss_conf             99999807972899788779
Q gi|254780374|r  156 AIVTAILENGNLIISGSQEV  175 (238)
Q Consensus       156 a~V~~VlpNGnL~I~G~k~i  175 (238)
                      -+=.||+-||+|.|.|.|..
T Consensus        43 iR~fEi~n~G~~RIfgYkm~   62 (103)
T pfam09158        43 IRNFEINNNGNMRIFGYKMM   62 (103)
T ss_pred             EEEEEEECCCCEEEEEEECC
T ss_conf             26899815881899875223


No 165
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.70  E-value=24  Score=15.76  Aligned_cols=33  Identities=12%  Similarity=0.169  Sum_probs=27.5

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEE
Q ss_conf             999999998079728997887798418879999
Q gi|254780374|r  153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLN  185 (238)
Q Consensus       153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~  185 (238)
                      -.|--++...+.|+|+|+|+-+=.||.+-|.|-
T Consensus       416 YrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIA  448 (542)
T COG1021         416 YRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIA  448 (542)
T ss_pred             EECCCEEEECCCCEEEEEEEEHHHHCCCCCHHH
T ss_conf             353754576688618997310565413521134


No 166
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.76  E-value=27  Score=15.38  Aligned_cols=17  Identities=35%  Similarity=0.511  Sum_probs=13.6

Q ss_pred             EEEEEEEEECCCCCEEE
Q ss_conf             99999999807972899
Q gi|254780374|r  153 LIAAIVTAILENGNLII  169 (238)
Q Consensus       153 ~isa~V~~VlpNGnL~I  169 (238)
                      -|++.|+||||+|-=-|
T Consensus       162 LvAVavtDvL~dGlSsV  178 (253)
T COG2935         162 LVAVAVTDVLPDGLSSV  178 (253)
T ss_pred             EEEEEEEECCCCCCEEE
T ss_conf             79998621166763048


No 167
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.69  E-value=36  Score=14.66  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=11.2

Q ss_pred             CCHHHHHH----HHHHHHHHHHCC
Q ss_conf             91179999----999999854336
Q gi|254780374|r    1 MYRYSFIV----LCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~----l~~~~lL~GCas   20 (238)
                      |+++..+.    ++.++.|+||++
T Consensus         1 M~~~ktlsr~al~~av~~LagC~~   24 (121)
T COG4259           1 MSKLKTLSRLALLLAVAALAGCGG   24 (121)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             951488999999999999988057


No 168
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.27  E-value=36  Score=14.62  Aligned_cols=23  Identities=35%  Similarity=0.225  Sum_probs=17.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |++.+...++..+++.||+....
T Consensus         1 m~~~~~~~~~~l~~~~~~~~~~~   23 (262)
T COG1729           1 MKSNLRLVLLGLSLLVGLAAPAS   23 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             90269999999999876225334


No 169
>PRK02889 tolB translocation protein TolB; Provisional
Probab=32.05  E-value=27  Score=15.43  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=12.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |+|+.+.++++++|+..|..
T Consensus         4 ~~~l~~~~~~~~~l~~~~~~   23 (430)
T PRK02889          4 MTKLGLRALVASCLIAAGGA   23 (430)
T ss_pred             HHHHHHHHHHHHHHHHCCCC
T ss_conf             99899999999999862102


No 170
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=31.24  E-value=38  Score=14.51  Aligned_cols=19  Identities=16%  Similarity=0.086  Sum_probs=13.4

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |+|+...++++++++++|.
T Consensus         1 m~~~l~~~~~~all~~~~~   19 (336)
T COG4143           1 MRRLLRALIGLALLVSAAL   19 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             9024999999999999865


No 171
>TIGR01067 rplN_bact ribosomal protein L14; InterPro: IPR005745   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In bacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities . L14 is a protein of 119 to 137 amino-acid residues. This family distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=30.82  E-value=37  Score=14.57  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=22.2

Q ss_pred             CCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCC
Q ss_conf             3223676876999997241010000122234565
Q gi|254780374|r   74 DSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNS  107 (238)
Q Consensus        74 D~RA~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~  107 (238)
                      .+|--.|||+|+|.|.+-.-.........=|.++
T Consensus        29 ~~~~A~vGD~Iv~~vK~a~P~~~~~~~~~vKKGd   62 (128)
T TIGR01067        29 RRRYAKVGDVIVVVVKDAIPNGKGKYKLKVKKGD   62 (128)
T ss_pred             CCCEECCCCEEEEEEEEEECCCCCCEEECCCCCC
T ss_conf             8220212989999876630598763010231133


No 172
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.70  E-value=27  Score=15.39  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=11.0

Q ss_pred             CCH-HHHHHH-HHHHHHHHHCC
Q ss_conf             911-799999-99999854336
Q gi|254780374|r    1 MYR-YSFIVL-CYSSLLFGCHS   20 (238)
Q Consensus         1 M~r-~~l~~l-~~~~lL~GCas   20 (238)
                      |+. +++-.+ +...+|+||++
T Consensus         1 mrtk~vlGaviLaS~LLaGCsn   22 (85)
T PRK09973          1 MKTIFTVGAVVLATCLLSGCVN   22 (85)
T ss_pred             CCCEEHHHHHHHHHHHHHCCCC
T ss_conf             9602110699999999981555


No 173
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=30.70  E-value=37  Score=14.53  Aligned_cols=48  Identities=19%  Similarity=0.099  Sum_probs=23.6

Q ss_pred             EEEEEEEEEEEEEEC----CCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEE
Q ss_conf             148999999999980----7972899788779841887999999798477678997382
Q gi|254780374|r  148 EKLNLLIAAIVTAIL----ENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVS  202 (238)
Q Consensus       148 ~~l~~~isa~V~~Vl----pNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~  202 (238)
                      .-+.+.-.-+|+-.-    --|||+|       |.++..++..-+--..-.+..+-.|.
T Consensus       285 ~pV~Aaa~G~VvyaG~~l~gyGnlii-------IkH~~~~lsaYahn~~~lVkeg~~V~  336 (374)
T PRK10871        285 QAIIATADGRVVYAGNALRGYGNLII-------IKHNDDYLSAYAHNDTMLVREQQEVK  336 (374)
T ss_pred             CEEEECCCEEEEEECCCCCCCCEEEE-------EECCCCCEEEEECCCCCCCCCCCEEC
T ss_conf             81785378389992478787762899-------98499867861676626678889988


No 174
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=30.66  E-value=35  Score=14.74  Aligned_cols=17  Identities=35%  Similarity=0.659  Sum_probs=13.4

Q ss_pred             EEEEEECCCCCEEEEEE
Q ss_conf             99999807972899788
Q gi|254780374|r  156 AIVTAILENGNLIISGS  172 (238)
Q Consensus       156 a~V~~VlpNGnL~I~G~  172 (238)
                      +.+...+.+|||||.+.
T Consensus        88 ~~~a~L~d~GNLVl~~~  104 (116)
T cd00028          88 NYVLVLLDDGNLVLYDS  104 (116)
T ss_pred             CEEEEEECCCCEEEECC
T ss_conf             75999938988999869


No 175
>pfam09676 TraV Type IV conjugative transfer system lipoprotein (TraV). This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=30.34  E-value=19  Score=16.42  Aligned_cols=20  Identities=20%  Similarity=0.134  Sum_probs=12.8

Q ss_pred             ECCCCCEEEEEEEEEEEECC
Q ss_conf             80797289978877984188
Q gi|254780374|r  161 ILENGNLIISGSQEVRVNDE  180 (238)
Q Consensus       161 VlpNGnL~I~G~k~i~vn~e  180 (238)
                      +..+|+|.-.+.=.+.|...
T Consensus       113 ~d~~g~~~~~~~vy~~v~~~  132 (134)
T pfam09676       113 IDADGDLHDPRYVYFVVDEG  132 (134)
T ss_pred             ECCCCCEECCCEEEEEECCC
T ss_conf             87999886233699996478


No 176
>PRK04792 tolB translocation protein TolB; Provisional
Probab=30.09  E-value=38  Score=14.48  Aligned_cols=19  Identities=5%  Similarity=-0.076  Sum_probs=10.4

Q ss_pred             CCHHH-HHHHHHHHHHHHHC
Q ss_conf             91179-99999999985433
Q gi|254780374|r    1 MYRYS-FIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~-l~~l~~~~lL~GCa   19 (238)
                      |+|.+ +.++++++++++||
T Consensus         1 M~k~~~~~l~lll~~~s~~A   20 (450)
T PRK04792          1 MLKRLILGLFVLLLSFSQVA   20 (450)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             93899999999999865752


No 177
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family; InterPro: IPR006532   The proteins contain three RNA recognition motifs and have been characterised as poly-pyrimidine tract binding proteins associated with RNA splicing factors , , . In the case of PUF60, in complex with p54, and in the presence of U2AF, it facilitates association of U2 snRNP with pre-mRNA . .
Probab=30.01  E-value=18  Score=16.53  Aligned_cols=34  Identities=24%  Similarity=0.495  Sum_probs=29.5

Q ss_pred             CCEEEEEEE-------EEEEECCEEEEEEEEEECHHHCCCC
Q ss_conf             728997887-------7984188799999979847767899
Q gi|254780374|r  165 GNLIISGSQ-------EVRVNDEIRSLNVTGIVRPQDVDAH  198 (238)
Q Consensus       165 GnL~I~G~k-------~i~vn~e~~~i~isGiVRp~DI~~~  198 (238)
                      =||-|+|.-       ++.-.++...|.|+=.|.|+||+-+
T Consensus       667 E~m~I~G~sARhlvM~kLmR~~~S~VivLRNMV~P~DiDe~  707 (791)
T TIGR01645       667 EGMSIKGNSARHLVMQKLMRKNESRVIVLRNMVDPKDIDED  707 (791)
T ss_pred             CCCEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf             17422336489999887346467707898347888433210


No 178
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=29.77  E-value=40  Score=14.35  Aligned_cols=25  Identities=32%  Similarity=0.248  Sum_probs=17.9

Q ss_pred             CCCCCCCCCCCCCEEEEEEEECCHH
Q ss_conf             2112322367687699999724101
Q gi|254780374|r   70 ALFKDSRALNVGDILTVDIRIDDQA   94 (238)
Q Consensus        70 ~lf~D~RA~~VGDIiTV~i~E~~~a   94 (238)
                      .+..+.|+-+=||--.+++.-...+
T Consensus        85 ~~Isg~r~erdGd~~~lv~~~~~~~  109 (342)
T COG3317          85 ALISGSRAERDGDTRWLVVENQPAA  109 (342)
T ss_pred             HHCCCCHHEECCCEEEEEEECCCHH
T ss_conf             2246522111587369998179678


No 179
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=29.57  E-value=34  Score=14.82  Aligned_cols=14  Identities=36%  Similarity=0.619  Sum_probs=8.3

Q ss_pred             EEECCCCCEEEEEE
Q ss_conf             99807972899788
Q gi|254780374|r  159 TAILENGNLIISGS  172 (238)
Q Consensus       159 ~~VlpNGnL~I~G~  172 (238)
                      ++++|||.|+|+.-
T Consensus        38 ~~v~~nGsL~I~~v   51 (79)
T cd05734          38 IQLLSNGSLLIKHV   51 (79)
T ss_pred             EEECCCCCEEEEEC
T ss_conf             89836986999435


No 180
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=29.39  E-value=38  Score=14.49  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=13.6

Q ss_pred             CCH-HHHHHHHHHHHHHHHCCC
Q ss_conf             911-799999999998543367
Q gi|254780374|r    1 MYR-YSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r-~~l~~l~~~~lL~GCas~   21 (238)
                      |.+ .+...+++.+||.||...
T Consensus         1 mvk~g~~~~~~~~~LL~aCg~s   22 (147)
T COG4939           1 MVKYGLVGMIVALSLLTACGKS   22 (147)
T ss_pred             CCEEHHHHHHHHHHHHHHHCCC
T ss_conf             9130365999999999870666


No 181
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=29.08  E-value=41  Score=14.28  Aligned_cols=17  Identities=18%  Similarity=0.317  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             99999999998543367
Q gi|254780374|r    5 SFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         5 ~l~~l~~~~lL~GCas~   21 (238)
                      +++.+.++++|.||++.
T Consensus         6 ~~~~~~~~~~~~~c~~~   22 (177)
T PRK10477          6 VVAAVTAAFLVVACSSP   22 (177)
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             99999999999764699


No 182
>PRK10959 outer membrane protein W; Provisional
Probab=28.95  E-value=41  Score=14.27  Aligned_cols=18  Identities=28%  Similarity=0.440  Sum_probs=13.0

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             911799999999998543
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGC   18 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GC   18 (238)
                      |||+.+.+++++.++++-
T Consensus         1 Mkk~~~a~~~~~a~~s~~   18 (212)
T PRK10959          1 MKKLTVAALAVATLLSGS   18 (212)
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             937899999999875167


No 183
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=28.90  E-value=40  Score=14.31  Aligned_cols=19  Identities=21%  Similarity=0.167  Sum_probs=12.3

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |++++.+++++++++.+|+
T Consensus         1 mk~~~~~~~~~~~~~~~~~   19 (247)
T PRK09495          1 MKSVLKVSLAALTLAFAVS   19 (247)
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             9779999999999999876


No 184
>pfam01203 GSPII_N Bacterial type II secretion system protein N.
Probab=28.74  E-value=26  Score=15.50  Aligned_cols=17  Identities=18%  Similarity=0.288  Sum_probs=11.0

Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             44444455761215775
Q gi|254780374|r   52 KNSDSTKKSYSLWRDSH   68 (238)
Q Consensus        52 ~~~~~~~~~gSL~~~~~   68 (238)
                      +.-......|++|+.+-
T Consensus        36 ~~v~l~gvsGTlW~G~a   52 (251)
T pfam01203        36 AGVSLSGVSGTLWQGRA   52 (251)
T ss_pred             CCEEEECCCCCEEECEE
T ss_conf             85389454556571347


No 185
>pfam03866 HAP Hydrophobic abundant protein (HAP). Expression of HAP is thought to be developmentally regulated and possibly involved in spherule cell wall formation.
Probab=28.30  E-value=42  Score=14.19  Aligned_cols=19  Identities=37%  Similarity=0.838  Sum_probs=13.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      ||||+|+.+|+.... +-++
T Consensus         1 mmkyifialc~faiv-alas   19 (167)
T pfam03866         1 MMKYIFIALCFFAIV-ALAS   19 (167)
T ss_pred             CCHHHHHHHHHHHHH-HHHH
T ss_conf             913589999999999-9962


No 186
>PHA00407 phage lambda Rz1-like protein
Probab=28.13  E-value=42  Score=14.18  Aligned_cols=15  Identities=27%  Similarity=0.465  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999985433672
Q gi|254780374|r    8 VLCYSSLLFGCHSSI   22 (238)
Q Consensus         8 ~l~~~~lL~GCas~~   22 (238)
                      ++.+++.++||++..
T Consensus        39 llicv~tISGCaSes   53 (84)
T PHA00407         39 LLICVATISGCASES   53 (84)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999976665025


No 187
>TIGR02134 transald_staph transaldolase; InterPro: IPR011861    This small family of proteins belong to the transaldolases. Coxiella and Staphylococcus lack members of the known transaldolase families and appear to require a transaldolase activity for completion of the pentose phosphate pathway..
Probab=27.58  E-value=21  Score=16.12  Aligned_cols=25  Identities=40%  Similarity=0.579  Sum_probs=20.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC-CEEEE
Q ss_conf             612157755211232236768-76999
Q gi|254780374|r   61 YSLWRDSHAALFKDSRALNVG-DILTV   86 (238)
Q Consensus        61 gSL~~~~~~~lf~D~RA~~VG-DIiTV   86 (238)
                      -=||. +.|-||.=..|-++| ||||+
T Consensus       173 eLLWA-SpRElfNiiQAd~iG~dIITc  198 (237)
T TIGR02134       173 ELLWA-SPRELFNIIQADRIGVDIITC  198 (237)
T ss_pred             HHHCC-CCHHHHHHHHHHHCCCEEEEC
T ss_conf             00024-511456677473428406762


No 188
>pfam07119 DUF1375 Protein of unknown function (DUF1375). This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.
Probab=26.78  E-value=28  Score=15.28  Aligned_cols=19  Identities=26%  Similarity=0.366  Sum_probs=12.3

Q ss_pred             HHHHHHHHHCCCCCCCCCC
Q ss_conf             9999985433672002568
Q gi|254780374|r   10 CYSSLLFGCHSSISEITGI   28 (238)
Q Consensus        10 ~~~~lL~GCas~~~~~~~~   28 (238)
                      ++.++|+||++-+....+.
T Consensus         3 ~~~~~lsGC~si~t~~~~~   21 (70)
T pfam07119         3 ALLLLLSGCGTIVTLTGGD   21 (70)
T ss_pred             HHHHHHCCCHHHEECCCCC
T ss_conf             7998873451012415788


No 189
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=26.74  E-value=45  Score=14.02  Aligned_cols=20  Identities=20%  Similarity=0.150  Sum_probs=10.1

Q ss_pred             CCHHH--HHHHHH--HHHHHHHCC
Q ss_conf             91179--999999--999854336
Q gi|254780374|r    1 MYRYS--FIVLCY--SSLLFGCHS   20 (238)
Q Consensus         1 M~r~~--l~~l~~--~~lL~GCas   20 (238)
                      |++.-  +.++++  ++.|+||++
T Consensus         1 Mkkkk~~~~~~~~~~~l~LaaC~s   24 (283)
T PRK02998          1 MKKKKLFIGTIISCVVLALSACGS   24 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             935899999999999999986689


No 190
>KOG1923 consensus
Probab=26.64  E-value=45  Score=14.01  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999998543367200256875366777766444
Q gi|254780374|r   10 CYSSLLFGCHSSISEITGIPQMSPMGSSLDENN   42 (238)
Q Consensus        10 ~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~   42 (238)
                      ...+.+++|.++.......|...|.+...+...
T Consensus       264 a~gs~asA~~s~~~S~s~ppppap~p~~~~~~a  296 (830)
T KOG1923         264 ALGSLASACDSQPGSGSGPPPPAPLPHTAQSDA  296 (830)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             666665403567888999999999987655667


No 191
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=26.33  E-value=46  Score=13.97  Aligned_cols=15  Identities=20%  Similarity=0.476  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999985433672
Q gi|254780374|r    8 VLCYSSLLFGCHSSI   22 (238)
Q Consensus         8 ~l~~~~lL~GCas~~   22 (238)
                      .++++++|+||++..
T Consensus        17 ~illa~vla~C~t~~   31 (604)
T COG3107          17 PILLALVLAGCSTFL   31 (604)
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999997604678


No 192
>PRK10554 outer membrane porin protein C; Provisional
Probab=26.12  E-value=46  Score=13.96  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCC
Q ss_conf             91179999999999854336
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHS   20 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas   20 (238)
                      |||.+|.+++.+++++|.+.
T Consensus         1 MKk~~LA~~i~all~ag~a~   20 (373)
T PRK10554          1 MKVKVLSLLVPALLVAGAAN   20 (373)
T ss_pred             CCHHHHHHHHHHHHHHCCCC
T ss_conf             95408999999998607531


No 193
>PRK03757 hypothetical protein; Provisional
Probab=25.99  E-value=46  Score=13.93  Aligned_cols=15  Identities=20%  Similarity=-0.009  Sum_probs=9.4

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             911799999999998
Q gi|254780374|r    1 MYRYSFIVLCYSSLL   15 (238)
Q Consensus         1 M~r~~l~~l~~~~lL   15 (238)
                      |+|+++.++++++++
T Consensus         1 mkk~~l~~~l~a~~~   15 (191)
T PRK03757          1 MKKTLLGLTLGSLLF   15 (191)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             904399999999986


No 194
>pfam01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain.
Probab=25.98  E-value=46  Score=13.93  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=25.8

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCHHHHCC
Q ss_conf             5521123223676876999997241010000
Q gi|254780374|r   68 HAALFKDSRALNVGDILTVDIRIDDQAVFDN   98 (238)
Q Consensus        68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~   98 (238)
                      ..++|.+.|-+.+|+.|-++|.|+..+...+
T Consensus        69 ~~p~la~~~V~y~GqpvA~VvAet~~~A~~A   99 (111)
T pfam01315        69 PDALLADDKVRFVGQPIAAVVADDEETARDA   99 (111)
T ss_pred             CCCCCCCCEEEECCCEEEEEEECCHHHHHHH
T ss_conf             7330568989888988999999999999999


No 195
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=25.76  E-value=47  Score=13.91  Aligned_cols=20  Identities=5%  Similarity=0.122  Sum_probs=9.1

Q ss_pred             EEEEEEEEECCCCCEEEEEE
Q ss_conf             99999999807972899788
Q gi|254780374|r  153 LIAAIVTAILENGNLIISGS  172 (238)
Q Consensus       153 ~isa~V~~VlpNGnL~I~G~  172 (238)
                      +++++|+|..|.-+.++---
T Consensus       103 tatVtV~ek~~~k~~V~L~~  122 (465)
T PRK08190        103 TVTVTVREKRPEKRIVLLDC  122 (465)
T ss_pred             EEEEEEEEECCCCCEEEEEE
T ss_conf             99999999717889899997


No 196
>pfam07241 consensus
Probab=25.74  E-value=47  Score=13.91  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=25.6

Q ss_pred             CCCCCEEEEEEEEEEEECCEEEEEEEEEEC
Q ss_conf             079728997887798418879999997984
Q gi|254780374|r  162 LENGNLIISGSQEVRVNDEIRSLNVTGIVR  191 (238)
Q Consensus       162 lpNGnL~I~G~k~i~vn~e~~~i~isGiVR  191 (238)
                      +.+|.+.|+|+.-+--.-..+.|.++|.|+
T Consensus        53 ~~~g~i~I~G~~L~I~~i~~eei~I~G~I~   82 (87)
T pfam07241        53 LKVGQIIIKGENFVIKFILPEEILLEGKIK   82 (87)
T ss_pred             CCCEEEEEECCCEEEEEECCCEEEEEEEEE
T ss_conf             685799999534999996362899999998


No 197
>TIGR00008 infA translation initiation factor IF-1; InterPro: IPR004368 This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (IPR003029 from INTERPRO).; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=25.73  E-value=47  Score=13.90  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=29.7

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCC
Q ss_conf             99999999807972899788779841887999999798477678
Q gi|254780374|r  153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVD  196 (238)
Q Consensus       153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~  196 (238)
                      .+.-.|+|.|||+.+.|+=+     |+..=.-.+||-+|-..|.
T Consensus         6 ~~~G~v~e~l~n~~f~V~Le-----N~~~v~a~iSGk~r~~~ir   44 (69)
T TIGR00008         6 EVEGKVVESLPNAMFRVELE-----NGHEVLAHISGKIRKNYIR   44 (69)
T ss_pred             EECCEEEECCCCCEEEEEEC-----CCCEEEEEECCEEECCEEE
T ss_conf             74238985436982699947-----9978989971034135175


No 198
>PRK09752 adhesin; Provisional
Probab=25.54  E-value=39  Score=14.43  Aligned_cols=22  Identities=14%  Similarity=-0.002  Sum_probs=10.4

Q ss_pred             CCCCCCCCC--CCCCCCCCCCCCC
Q ss_conf             576121577--5521123223676
Q gi|254780374|r   59 KSYSLWRDS--HAALFKDSRALNV   80 (238)
Q Consensus        59 ~~gSL~~~~--~~~lf~D~RA~~V   80 (238)
                      -.||-+..-  ...||.-++.-|-
T Consensus       957 EaGSYlANLaAANtLFvtrLhDRl  980 (1250)
T PRK09752        957 KVGGYLNNLRAANQAFVMERRDHA  980 (1250)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             111157799999987665116424


No 199
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=25.51  E-value=47  Score=13.88  Aligned_cols=15  Identities=33%  Similarity=0.372  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             999999985433672
Q gi|254780374|r    8 VLCYSSLLFGCHSSI   22 (238)
Q Consensus         8 ~l~~~~lL~GCas~~   22 (238)
                      ++++++.|+||.+..
T Consensus        13 ~l~~~l~l~gCg~~~   27 (271)
T PRK11063         13 ALIGSLALVGCGQDE   27 (271)
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             999999750058985


No 200
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single HMM families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=24.94  E-value=40  Score=14.31  Aligned_cols=16  Identities=31%  Similarity=0.414  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999999854336
Q gi|254780374|r    5 SFIVLCYSSLLFGCHS   20 (238)
Q Consensus         5 ~l~~l~~~~lL~GCas   20 (238)
                      +-+.|+++++|.||+.
T Consensus        12 lal~L~~~l~l~~cs~   27 (135)
T TIGR03044        12 LALVLGLCLLLTACSG   27 (135)
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999999734567


No 201
>pfam06924 DUF1281 Protein of unknown function (DUF1281). This family consists of several hypothetical enterobacterial proteins of around 170 residues in length. Members of this family are found in Escherichia coli, Salmonella typhimurium and Shigella species. The function of this family is unknown.
Probab=24.91  E-value=42  Score=14.21  Aligned_cols=15  Identities=20%  Similarity=0.432  Sum_probs=10.4

Q ss_pred             HHHHHHHHHCCCCCC
Q ss_conf             999998543367200
Q gi|254780374|r   10 CYSSLLFGCHSSISE   24 (238)
Q Consensus        10 ~~~~lL~GCas~~~~   24 (238)
                      .+-+||+|||.-+++
T Consensus        32 si~LFLAGCAGiLkP   46 (134)
T pfam06924        32 SIKLFLAGCAGILKP   46 (134)
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             999999701111566


No 202
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=24.86  E-value=49  Score=13.80  Aligned_cols=19  Identities=21%  Similarity=0.231  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             1799999999998543367
Q gi|254780374|r    3 RYSFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         3 r~~l~~l~~~~lL~GCas~   21 (238)
                      |+.+.++++.++++||...
T Consensus         2 k~~~~~~~~~~~~~~~~~~   20 (308)
T PRK11669          2 KIRVSLLSLLLLLAGVPVA   20 (308)
T ss_pred             CHHHHHHHHHHHHHHHCCC
T ss_conf             3269999999999740036


No 203
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=24.85  E-value=43  Score=14.14  Aligned_cols=13  Identities=31%  Similarity=0.603  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999985433
Q gi|254780374|r    7 IVLCYSSLLFGCH   19 (238)
Q Consensus         7 ~~l~~~~lL~GCa   19 (238)
                      .++..+++|+||.
T Consensus        14 ~l~~~~~lLsGC~   26 (305)
T PRK10525         14 SLFAGTVLLSGCN   26 (305)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999866787


No 204
>pfam11353 DUF3153 Protein of unknown function (DUF3153). This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=24.38  E-value=27  Score=15.41  Aligned_cols=19  Identities=26%  Similarity=0.508  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999985433672002
Q gi|254780374|r    7 IVLCYSSLLFGCHSSISEI   25 (238)
Q Consensus         7 ~~l~~~~lL~GCas~~~~~   25 (238)
                      +++.++++|+||......+
T Consensus         3 vlllltlLLSGCV~~~~~i   21 (210)
T pfam11353         3 VLLLLTLLLSGCVRIDADL   21 (210)
T ss_pred             HHHHHHHHHCCEEEEECEE
T ss_conf             2999999847818984303


No 205
>PRK10002 outer membrane protein F; Provisional
Probab=24.20  E-value=50  Score=13.72  Aligned_cols=19  Identities=26%  Similarity=0.279  Sum_probs=9.3

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |+|.+|.+++.+++++|.+
T Consensus         2 MKK~~LA~ai~all~ag~a   20 (362)
T PRK10002          2 MKRNILAVIVPALLVAGTA   20 (362)
T ss_pred             CHHHHHHHHHHHHHHHCCC
T ss_conf             3087999999999860644


No 206
>PRK06687 chlorohydrolase; Validated
Probab=24.13  E-value=37  Score=14.55  Aligned_cols=15  Identities=7%  Similarity=0.208  Sum_probs=6.5

Q ss_pred             CCCCCCEEEEEEEEC
Q ss_conf             367687699999724
Q gi|254780374|r   77 ALNVGDILTVDIRID   91 (238)
Q Consensus        77 A~~VGDIiTV~i~E~   91 (238)
                      |++-|=.+.+-+.|.
T Consensus       205 a~~~~~~~~~H~~e~  219 (422)
T PRK06687        205 AVENQTMVHIHLSET  219 (422)
T ss_pred             HHHCCCEEEEEECCC
T ss_conf             997198499996452


No 207
>COG1462 CsgG Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]
Probab=23.50  E-value=52  Score=13.64  Aligned_cols=28  Identities=11%  Similarity=0.118  Sum_probs=15.0

Q ss_pred             CCCCCCHHEECEEEEEEEEEEEEEEECC
Q ss_conf             4321100000001489999999999807
Q gi|254780374|r  136 GASSGKGSISRAEKLNLLIAAIVTAILE  163 (238)
Q Consensus       136 ~~~~g~G~~~~~~~l~~~isa~V~~Vlp  163 (238)
                      ..+-|-+.-.....-...|..+||+|--
T Consensus       139 ~~l~G~~~r~~~q~a~iavdLRvVnv~T  166 (252)
T COG1462         139 AQLFGIGARGKKQIAYIAVDLRVVNVST  166 (252)
T ss_pred             CCCEEEECCCCCCEEEEEEEEEEEECCC
T ss_conf             5401021143010112677888886144


No 208
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=23.32  E-value=52  Score=13.62  Aligned_cols=49  Identities=29%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             EEEECCCCCEEEEEEEE------EEEECCEEEEEE--------------EEEECHHHCCCCCEEEHHEEEE
Q ss_conf             99980797289978877------984188799999--------------9798477678997382420554
Q gi|254780374|r  158 VTAILENGNLIISGSQE------VRVNDEIRSLNV--------------TGIVRPQDVDAHNSVSYDKIAE  208 (238)
Q Consensus       158 V~~VlpNGnL~I~G~k~------i~vn~e~~~i~i--------------sGiVRp~DI~~~NtV~S~~iAd  208 (238)
                      |-.-|-||.|.|-.+|.      +.+|+-  +|--              +=+|---|+..+|.=.|-.++-
T Consensus       182 vdaRlynG~lYiv~rk~~~~cPiv~iN~~--ei~~~~~y~p~~pm~~dttyii~~vd~ksg~vens~~vvG  250 (603)
T COG4880         182 VDARLYNGELYIVARKSSIDCPIVVINGR--EINEAPLYSPDFPMDPDTTYIIAGVDLKSGNVENSAYVVG  250 (603)
T ss_pred             EEEEEECCEEEEEECCCCCCCCEEEECCE--EECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEC
T ss_conf             43034388899998036899988998776--8235532266677788714999987526786021589945


No 209
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=23.30  E-value=52  Score=13.62  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             99999999998543367
Q gi|254780374|r    5 SFIVLCYSSLLFGCHSS   21 (238)
Q Consensus         5 ~l~~l~~~~lL~GCas~   21 (238)
                      .+.+|.++++|+||...
T Consensus         7 ~~~ll~~~~~l~gC~~~   23 (351)
T PRK10461          7 RVALLAAALLLVGCDQA   23 (351)
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999872488


No 210
>PRK10759 hypothetical protein; Provisional
Probab=23.11  E-value=40  Score=14.35  Aligned_cols=13  Identities=31%  Similarity=0.603  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999985433
Q gi|254780374|r    7 IVLCYSSLLFGCH   19 (238)
Q Consensus         7 ~~l~~~~lL~GCa   19 (238)
                      ++++++++|+||+
T Consensus         4 ~~~~~~l~~sgc~   16 (106)
T PRK10759          4 LIVPLLLLLSGCS   16 (106)
T ss_pred             HHHHHHHHHCCCH
T ss_conf             9999999984423


No 211
>pfam06085 Rz1 Lipoprotein Rz1 precursor. This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces.
Probab=22.87  E-value=53  Score=13.56  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=11.2

Q ss_pred             CCHHHHHHH--HHHHHHHHHCCC
Q ss_conf             911799999--999998543367
Q gi|254780374|r    1 MYRYSFIVL--CYSSLLFGCHSS   21 (238)
Q Consensus         1 M~r~~l~~l--~~~~lL~GCas~   21 (238)
                      |+++.+.+.  .+.+.++||.+.
T Consensus         1 Mr~lkm~l~~~m~~L~vsaC~S~   23 (59)
T pfam06085         1 MRKLKMKLCVMMLPLVVSACSSK   23 (59)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             95202569999989999982699


No 212
>KOG1193 consensus
Probab=22.78  E-value=53  Score=13.55  Aligned_cols=29  Identities=31%  Similarity=0.251  Sum_probs=22.7

Q ss_pred             CCCHHEECEEEEEEE-EEEEEEEECCCCCE
Q ss_conf             110000000148999-99999998079728
Q gi|254780374|r  139 SGKGSISRAEKLNLL-IAAIVTAILENGNL  167 (238)
Q Consensus       139 ~g~G~~~~~~~l~~~-isa~V~~VlpNGnL  167 (238)
                      -|-|+.-|.-.+.+. |||.|+++||++-=
T Consensus       302 ~gyGSfHqqY~lDgkLIAVgViDILP~cvS  331 (511)
T KOG1193         302 CGYGSFHQQYRLDGKLIAVGVIDILPKCVS  331 (511)
T ss_pred             CCCCCHHHEEEECCEEEEEEEEECCCCCCC
T ss_conf             665556650234786899987322777531


No 213
>pfam09619 YscW Type III secretion system lipoprotein chaperone (YscW). This entry is encoded within type III secretion operons. The protein has been characterized as a chaperone for the outer membrane pore component YscC. YscW is a lipoprotein which is itself localized to the outer membrane and, it is believed, facilitates the oligomerisation and localisation of YscC.
Probab=22.39  E-value=28  Score=15.27  Aligned_cols=15  Identities=33%  Similarity=0.392  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             999999854336720
Q gi|254780374|r    9 LCYSSLLFGCHSSIS   23 (238)
Q Consensus         9 l~~~~lL~GCas~~~   23 (238)
                      +.++++|+||.+...
T Consensus         2 l~l~~lL~GCVt~p~   16 (124)
T pfam09619         2 LPLLLLLTGCVTTPM   16 (124)
T ss_pred             HHHHHHHHCCCCCCC
T ss_conf             203324606556777


No 214
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266   This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=22.30  E-value=54  Score=13.49  Aligned_cols=18  Identities=28%  Similarity=0.305  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHH--CCC
Q ss_conf             799999999998543--367
Q gi|254780374|r    4 YSFIVLCYSSLLFGC--HSS   21 (238)
Q Consensus         4 ~~l~~l~~~~lL~GC--as~   21 (238)
                      ++.+++...++|+||  +..
T Consensus         7 l~~~~~~a~~lLsaCsGg~~   26 (924)
T TIGR02917         7 LLTILLAAILLLSACSGGDQ   26 (924)
T ss_pred             HHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999863057888


No 215
>pfam10368 YkyA Putative cell-wall binding lipoprotein. YkyA is a family of proteins containing a lipoprotein signal and a hydrolase domain. It is similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely to belong to pathways important for pathogenicity.
Probab=21.86  E-value=37  Score=14.56  Aligned_cols=11  Identities=36%  Similarity=0.540  Sum_probs=7.4

Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999854336
Q gi|254780374|r   10 CYSSLLFGCHS   20 (238)
Q Consensus        10 ~~~~lL~GCas   20 (238)
                      +.++||+||.+
T Consensus         3 ~s~~lLaGC~~   13 (205)
T pfam10368         3 LSILLLTGCTT   13 (205)
T ss_pred             HHHHHHHHHCC
T ss_conf             89999986269


No 216
>PRK11479 hypothetical protein; Provisional
Probab=21.74  E-value=56  Score=13.42  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999998543367200
Q gi|254780374|r    5 SFIVLCYSSLLFGCHSSISE   24 (238)
Q Consensus         5 ~l~~l~~~~lL~GCas~~~~   24 (238)
                      .++++...++|+||+.-+..
T Consensus         7 ~~~~~~~~lll~~c~~dv~~   26 (273)
T PRK11479          7 CRLLLPWFLLLSACTVDISQ   26 (273)
T ss_pred             HHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999998775412466


No 217
>pfam05968 Bacillus_PapR Bacillus PapR protein. This family consists of the Bacillus species specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific.
Probab=21.59  E-value=56  Score=13.40  Aligned_cols=19  Identities=21%  Similarity=0.240  Sum_probs=16.4

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |+|+++..++...+++|-+
T Consensus         1 MKKlLigslltlAM~wGis   19 (48)
T pfam05968         1 MKKLLIGSLLTLAMLWGIS   19 (48)
T ss_pred             CCHHHHHHHHHHHHHHCCC
T ss_conf             9047886899999995332


No 218
>PRK11679 lipoprotein; Provisional
Probab=21.35  E-value=57  Score=13.37  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCCEEEEEEEE
Q ss_conf             211232236768769999972
Q gi|254780374|r   70 ALFKDSRALNVGDILTVDIRI   90 (238)
Q Consensus        70 ~lf~D~RA~~VGDIiTV~i~E   90 (238)
                      +|-..-|.-+=||..++.+.-
T Consensus        90 ~l~~gsr~e~~g~~~~~lv~~  110 (345)
T PRK11679         90 ALISGARTQFNGDTATLLLEN  110 (345)
T ss_pred             CCCCCCEEEECCCEEEEEEEC
T ss_conf             547883687379717999837


No 219
>PRK11186 carboxy-terminal protease; Provisional
Probab=21.33  E-value=57  Score=13.37  Aligned_cols=32  Identities=13%  Similarity=0.325  Sum_probs=13.8

Q ss_pred             CCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECCCC
Q ss_conf             655555432110000000148999999999980797
Q gi|254780374|r  130 LNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENG  165 (238)
Q Consensus       130 ~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~VlpNG  165 (238)
                      ++.+-+.+|.|-|..-+.+.  +.  ++|+++.|+|
T Consensus       237 F~~~msgs~eGIGa~l~~~d--~~--~~Iv~~i~Gg  268 (673)
T PRK11186        237 FNTEMNLSLEGIGAVLQMDD--DY--TVIKSLVAGG  268 (673)
T ss_pred             HHHHCCCEEEEEEEEEEEEC--CE--EEEEEECCCC
T ss_conf             98741672766889999989--98--9999706899


No 220
>PHA00144 major head protein
Probab=21.15  E-value=57  Score=13.34  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CCCCCCCCCCCCCHHE
Q ss_conf             552112322367687699999724101000012223456544555433345544556--6655-4655555432110000
Q gi|254780374|r   68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTP--QMNG-NLNYDGGGASSGKGSI  144 (238)
Q Consensus        68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~g~G~~  144 (238)
                      +.+.|+.--|+--||.+-++-.--.++...+ ....|...+..-+-.    +...+-  .+.. +.+.+.+.+..|.=++
T Consensus       329 S~S~FanavAFv~~~~~~~v~qviv~p~i~~-lk~g~~~~~~a~ir~----p~~k~~~v~W~ve~~s~Gt~is~dgvl~i  403 (438)
T PHA00144        329 SASRFANAVAFVTGDNTIVVTQVIVSPEIAS-LKQGKSQGFTAYIRA----PDNKGHAVVWYVEGGSTGTSISNDGVLTI  403 (438)
T ss_pred             CCCCCCCCEEEECCCCCCCEEEEEECCCEEE-EECCCCCCCEEEEEC----CCCCCCEEEEEEECCCCCCEECCCCEEEE
T ss_conf             0355655036504787631003885443121-001676760379877----77766347899607865512226735985


Q ss_pred             ECEEEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Q ss_conf             000148999999999980797289978877984
Q gi|254780374|r  145 SRAEKLNLLIAAIVTAILENGNLIISGSQEVRV  177 (238)
Q Consensus       145 ~~~~~l~~~isa~V~~VlpNGnL~I~G~k~i~v  177 (238)
                      .-++--++++-|+|.---+|||--|.||-.|.|
T Consensus       404 ~~nE~~~~~v~v~Vd~~~~~~nK~v~gEa~i~v  436 (438)
T PHA00144        404 GANEPNQLTVKVTVDIGTADGNKPVVGEAVISV  436 (438)
T ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEE
T ss_conf             389987147999997158889865443368873


No 221
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203   This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E  (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=20.99  E-value=58  Score=13.32  Aligned_cols=31  Identities=29%  Similarity=0.360  Sum_probs=23.4

Q ss_pred             CCCCCC--CCCCCCCCEEEEEEEECCHHHHCCC
Q ss_conf             521123--2236768769999972410100001
Q gi|254780374|r   69 AALFKD--SRALNVGDILTVDIRIDDQAVFDNQ   99 (238)
Q Consensus        69 ~~lf~D--~RA~~VGDIiTV~i~E~~~a~~~~~   99 (238)
                      .++|++  .|+..-|-|+||.+-|+.+--|+-=
T Consensus        21 ~P~Fr~FGgr~~F~G~ivTvkcFEDNslvr~~L   53 (155)
T TIGR01935        21 EPVFRNFGGRAAFAGPIVTVKCFEDNSLVREVL   53 (155)
T ss_pred             CHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHH
T ss_conf             234321144232478403899970473688998


No 222
>PRK06760 hypothetical protein; Provisional
Probab=20.95  E-value=58  Score=13.32  Aligned_cols=38  Identities=13%  Similarity=-0.055  Sum_probs=18.0

Q ss_pred             CCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCCCCCCCCC
Q ss_conf             5211232236768769999972410100001222345654
Q gi|254780374|r   69 AALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSL  108 (238)
Q Consensus        69 ~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~  108 (238)
                      ..+|.-..+.-=|-  .|+|-..+.|..--....-|....
T Consensus        56 ~~~y~vK~g~~~~k--kVLim~~sTAe~mvKk~llRkrDn   93 (223)
T PRK06760         56 NEVFSVKKGEVGNG--QVLILNESTAQALIKEKVFRKRDN   93 (223)
T ss_pred             HHEEEEEEEEECCE--EEEEEEHHHHHHHHHHCCEEECCC
T ss_conf             32046675137882--799986189999976120230458


No 223
>PRK13697 cytochrome c6; Provisional
Probab=20.94  E-value=58  Score=13.32  Aligned_cols=19  Identities=26%  Similarity=0.044  Sum_probs=13.0

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |+|++.+++++.+++..+-
T Consensus         1 Mk~l~~~~l~~~~~~~~~~   19 (111)
T PRK13697          1 MKKILKLVLLTLLLLTFAF   19 (111)
T ss_pred             CHHHHHHHHHHHHHHHHHC
T ss_conf             9789999999999999980


No 224
>pfam03304 Mlp Mlp lipoprotein family. The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species. This family were previously known as 2.9 lipoprotein genes. These surface expressed genes may represent new candidate vaccinogens for Lyme disease. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=20.87  E-value=58  Score=13.31  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=10.6

Q ss_pred             HHHHHHHHH-HHHHHHHCCC
Q ss_conf             179999999-9998543367
Q gi|254780374|r    3 RYSFIVLCY-SSLLFGCHSS   21 (238)
Q Consensus         3 r~~l~~l~~-~~lL~GCas~   21 (238)
                      +++=+++|+ .++|.||.+.
T Consensus         2 KIINilfclfll~Ln~Cnsn   21 (150)
T pfam03304         2 KIINILFCLFLLMLNGCNSN   21 (150)
T ss_pred             CEEHHHHHHHHHHHCCCCCC
T ss_conf             43149999999998265678


No 225
>pfam10023 DUF2265 Predicted aminopeptidase (DUF2265). Members of this family of bacterial proteins comprise various hypothetical proteins and putative aminopeptidases. Their exact function, has not, as yet, been defined.
Probab=20.48  E-value=43  Score=14.13  Aligned_cols=14  Identities=36%  Similarity=0.823  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999854336
Q gi|254780374|r    7 IVLCYSSLLFGCHS   20 (238)
Q Consensus         7 ~~l~~~~lL~GCas   20 (238)
                      ++++++++|+||++
T Consensus         2 ~ll~~~l~l~gC~~   15 (338)
T pfam10023         2 LLLALALLLAGCQT   15 (338)
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             39999999868863


No 226
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=20.35  E-value=57  Score=13.35  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCCCCCEEEEEEEECCHHHH
Q ss_conf             5211232236768769999972410100
Q gi|254780374|r   69 AALFKDSRALNVGDILTVDIRIDDQAVF   96 (238)
Q Consensus        69 ~~lf~D~RA~~VGDIiTV~i~E~~~a~~   96 (238)
                      ..+|+|-++.+.|++|.|.|.|....+.
T Consensus        69 tg~F~~v~~~~~~~~Lvv~V~e~p~I~~   96 (766)
T COG4775          69 TGYFEDVRVEREGGTLVVTVKERPVINS   96 (766)
T ss_pred             CCCCCCEEEEECCCEEEEEEECCCCEEE
T ss_conf             6897613788709879999962772878


No 227
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938   This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=20.02  E-value=17  Score=16.70  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=14.0

Q ss_pred             HEEEEEEEEEECEEEECCCCCC
Q ss_conf             2055439998020331233486
Q gi|254780374|r  204 DKIAEARISYGGKGRTTELLRP  225 (238)
Q Consensus       204 ~~iAda~I~y~g~G~~~d~~~~  225 (238)
                      +-+|-.|=||.|||.|++-||.
T Consensus       223 SLtsHFRaEY~GRg~LA~RQQK  244 (333)
T TIGR02236       223 SLTSHFRAEYVGRGNLAERQQK  244 (333)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHH
T ss_conf             2100223676450247889869


Done!