Query         gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 238
No_of_seqs    135 out of 642
Neff          6.7 
Searched_HMMs 33803
Date          Wed Jun  1 12:27:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780374.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2elf_A Protein translation el  57.1      13 0.00038   17.1   4.6   36  153-188    34-81  (94)
  2 >1ah9_A IF1, initiation factor  46.9      15 0.00044   16.6   2.6   45  152-201     6-52  (71)
  3 >3i4o_A Translation initiation  46.7      19 0.00055   16.0   3.4   58  152-214    14-77  (79)
  4 >2wg5_A General control protei  42.9      20 0.00059   15.8   2.7   46  154-204     3-48  (73)
  5 >2f2f_C CDT C, cytolethal dist  40.7      14 0.00042   16.7   1.7   21    1-23      1-21  (186)
  6 >1kaf_A Transcription regulato  33.3      30 0.00089   14.7   2.6   19  156-174    46-64  (108)
  7 >2vx5_A Cellvibrio japonicus m  29.0      17  0.0005   16.3   0.5   29  207-235   307-335 (396)
  8 >3h43_A Proteasome-activating   28.4      36  0.0011   14.2   3.4   44  154-202     3-46  (68)
  9 >2w7y_A FCSSBP, probable sugar  27.7      15 0.00044   16.7   0.0   19    4-22      9-27  (185)
 10 >1hr0_W Translation initiation  24.5      11 0.00034   17.3  -1.0   37  154-196     9-46  (71)
 11 >1q02_A Sequestosome 1; helica  23.9      36  0.0011   14.2   1.4   13  223-235    24-36  (52)
 12 >1vlb_A Aldehyde oxidoreductas  23.7      44  0.0013   13.7   2.3   32   68-99     73-104 (196)
 13 >3dzw_A Agglutinin; lectin, ma  23.7      44  0.0013   13.7   2.1   18  156-173    83-100 (109)
 14 >1kj1_A Lectin I, lecgna 1; BU  23.5      45  0.0013   13.6   1.9   18  156-173    84-101 (109)
 15 >1m9s_A Internalin B; cell inv  23.5      38  0.0011   14.1   1.5   27  169-198    51-77  (86)
 16 >2i3y_A Epididymal secretory g  22.1      34   0.001   14.3   1.0   19    1-19      1-19  (215)
 17 >1n7z_A Baseplate structural p  21.8      48  0.0014   13.4   1.7   13   74-86      2-14  (104)
 18 >2ijr_A Hypothetical protein A  21.7      48  0.0014   13.4   1.8   14   11-24     12-25  (157)
 19 >1ffv_B CUTL, molybdoprotein o  21.4      49  0.0014   13.4   2.3   34   68-101    69-102 (205)
 20 >1t3q_B Quinoline 2-oxidoreduc  21.0      50  0.0015   13.3   2.2   33   68-100   100-132 (216)
 21 >2w3s_B Xanthine dehydrogenase  20.3      52  0.0015   13.2   2.4   34   68-101    58-91  (192)

No 1  
>>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} (A:277-370)
Probab=57.05  E-value=13  Score=17.07  Aligned_cols=36  Identities=25%  Similarity=0.222  Sum_probs=31.1

Q ss_pred             EEEEEEEEECCCC------------CEEEEEEEEEEEECCEEEEEEEE
Q ss_conf             9999999980797------------28997887798418879999997
Q gi|254780374|r  153 LIAAIVTAILENG------------NLIISGSQEVRVNDEIRSLNVTG  188 (238)
Q Consensus       153 ~isa~V~~VlpNG------------nL~I~G~k~i~vn~e~~~i~isG  188 (238)
                      ++.|+|+.+.-||            -+.+++.|.+..+.+.++|...+
T Consensus        34 svp~~V~~~~~~~~~~~~~~~g~~c~l~lkl~k~Vay~~gDr~li~~l   81 (94)
T 2elf_A           34 SEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANL   81 (94)
T ss_dssp             EEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEECT
T ss_pred             EEEEEEEEEECCCCCCEEECCCCEEEEEEEECCCEEECCCCEEEEEEC
T ss_conf             999999999527863146279998999999898487568999999989


No 2  
>>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} (A:)
Probab=46.86  E-value=15  Score=16.64  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHH--HCCCCCEE
Q ss_conf             999999999807972899788779841887999999798477--67899738
Q gi|254780374|r  152 LLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQ--DVDAHNSV  201 (238)
Q Consensus       152 ~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~--DI~~~NtV  201 (238)
                      ..+.+.|++.||||++.|+     --|+....-+++|-+|-.  -|.++..|
T Consensus         6 ~e~~G~V~~~L~~~~f~V~-----l~dg~~~~a~i~GKmRk~ri~I~~GD~V   52 (71)
T 1ah9_A            6 IEMQGTVLETLPNTMFRVE-----LENGHVVTAHISGKMRKNYIRILTGDKV   52 (71)
T ss_dssp             EECCEEEEEECSSSEEEEE-----ETTSCEEEEEECSSGGGTTCCCCTTCEE
T ss_pred             EEEEEEEEEECCCCEEEEE-----ECCCCEEEEECCCHHHEEEEEECCCCEE
T ss_conf             8999999998699789999-----5799799998464233027996499999


No 3  
>>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} (A:)
Probab=46.69  E-value=19  Score=16.04  Aligned_cols=58  Identities=21%  Similarity=0.235  Sum_probs=40.8

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHH--HCCCCCEE----EHHEEEEEEEEEE
Q ss_conf             999999999807972899788779841887999999798477--67899738----2420554399980
Q gi|254780374|r  152 LLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQ--DVDAHNSV----SYDKIAEARISYG  214 (238)
Q Consensus       152 ~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~--DI~~~NtV----~S~~iAda~I~y~  214 (238)
                      ..+..+|++.||||++.|+-     -|+....-+++|-.|-.  -|.++..|    +..+.--++|.|.
T Consensus        14 ~e~~G~V~~~L~~~~f~V~l-----~dg~~~~~~i~GKmrk~rI~I~~GD~V~Ve~~~yd~~kg~Ii~R   77 (79)
T 3i4o_A           14 IEVEGRVVEPLPNAMFRIEL-----ENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR   77 (79)
T ss_dssp             SEEEEEEEEEETTTEEEEEE-----TTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEEE
T ss_conf             99999999988998899997-----89999999714503575799449999999967777885889998


No 4  
>>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A (A:37-109)
Probab=42.89  E-value=20  Score=15.84  Aligned_cols=46  Identities=15%  Similarity=0.387  Sum_probs=37.5

Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHH
Q ss_conf             999999980797289978877984188799999979847767899738242
Q gi|254780374|r  154 IAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYD  204 (238)
Q Consensus       154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~  204 (238)
                      +-++|+|++.++..+|+-     -++.+.+..+++.|.++++.++..|.=.
T Consensus         3 ~Vg~v~e~id~~~~IVk~-----s~g~~~~V~v~~~vd~~~Lkpg~rVal~   48 (73)
T 2wg5_A            3 LVGVVSDILEDGRVVVKS-----STGPKFVVNTSQYINEEELKPGARVALN   48 (73)
T ss_dssp             EEEEEEEECTTSCEEEEE-----TTSCEEEECBCTTSCTTTCCTTCEEEEE
T ss_pred             EEEEEEEEECCCCEEEEE-----CCCCEEEEEECCCCCHHHCCCCCEEEEC
T ss_conf             699999995898289995-----7998899982167698898998999886


No 5  
>>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:)
Probab=40.69  E-value=14  Score=16.74  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=13.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             91179999999999854336720
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCHSSIS   23 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCas~~~   23 (238)
                      |+|++++.+.  +++.||++...
T Consensus         1 MkK~~i~f~~--~~i~~~ss~~~   21 (186)
T 2f2f_C            1 MKKYLLSFLL--SMILTLTSHAE   21 (186)
T ss_dssp             -----------------------
T ss_pred             CCHHHHHHHH--HHHHHCCCCCC
T ss_conf             9311699999--99986114665


No 6  
>>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} (A:)
Probab=33.27  E-value=30  Score=14.72  Aligned_cols=19  Identities=32%  Similarity=0.253  Sum_probs=16.1

Q ss_pred             EEEEEECCCCCEEEEEEEE
Q ss_conf             9999980797289978877
Q gi|254780374|r  156 AIVTAILENGNLIISGSQE  174 (238)
Q Consensus       156 a~V~~VlpNGnL~I~G~k~  174 (238)
                      -+=.||+-||+|.|.|.|.
T Consensus        46 iR~fEI~n~G~~RIfgYkm   64 (108)
T 1kaf_A           46 IRNFEINNNGNMRIFGYKM   64 (108)
T ss_dssp             EEEEEECTTSEEEEEEESC
T ss_pred             EEEEEEECCCCEEEEEEEC
T ss_conf             2689982488189986513


No 7  
>>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:)
Probab=29.03  E-value=17  Score=16.30  Aligned_cols=29  Identities=7%  Similarity=0.029  Sum_probs=19.6

Q ss_pred             EEEEEEEECEEEECCCCCCCHHHHHHHHH
Q ss_conf             54399980203312334866689999985
Q gi|254780374|r  207 AEARISYGGKGRTTELLRPPIGHQLIENL  235 (238)
Q Consensus       207 Ada~I~y~g~G~~~d~~~~gwl~r~~~~i  235 (238)
                      .+..|..+--|......++.|+.++++.+
T Consensus       307 ~~~Pi~itE~G~~~~~~~~~~~~~~~~~~  335 (396)
T 2vx5_A          307 KGKIAALTETGNNRLTIDNFWTERLLGPI  335 (396)
T ss_dssp             HTCEEEEEEECCTTCCSTTHHHHTTHHHH
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             79818994226678886367899887898


No 8  
>>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii} (A:18-85)
Probab=28.40  E-value=36  Score=14.21  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEE
Q ss_conf             9999999807972899788779841887999999798477678997382
Q gi|254780374|r  154 IAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVS  202 (238)
Q Consensus       154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~  202 (238)
                      +-++|+|++..+..+|.-.     ++.+.+..+++.|.++++.++..|.
T Consensus         3 ~Vg~v~e~id~~~~IVkss-----~g~~~~V~v~~~vd~~~Lkpg~rVa   46 (68)
T 3h43_A            3 IVGTVVDKVGERKVVVKSS-----TGPSFLVNVSHFVNPDDLAPGKRVC   46 (68)
T ss_dssp             EEEEEEEEEETTEEEEEET-----TSSEEEEEBCTTSCGGGCCTTCEEE
T ss_pred             EEEEEEEEECCCEEEEEEC-----CCCEEEEEECCCCCHHHCCCCCEEE
T ss_conf             8999999828983999967-----9998999806987978989999999


No 9  
>>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349)
Probab=27.66  E-value=15  Score=16.67  Aligned_cols=19  Identities=11%  Similarity=-0.214  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHCCCC
Q ss_conf             7999999999985433672
Q gi|254780374|r    4 YSFIVLCYSSLLFGCHSSI   22 (238)
Q Consensus         4 ~~l~~l~~~~lL~GCas~~   22 (238)
                      ++.++++++++|+||+...
T Consensus         9 ~~~~~l~~al~LagCgg~~   27 (185)
T 2w7y_A            9 HHSSGLVPRGSHXASGTSK   27 (185)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHCCCCCCCCCCC
T ss_conf             0577788612774467889


No 10 
>>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} (W:)
Probab=24.52  E-value=11  Score=17.35  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=19.3

Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEECCEE-EEEEEEEECHHHCC
Q ss_conf             99999998079728997887798418879-99999798477678
Q gi|254780374|r  154 IAAIVTAILENGNLIISGSQEVRVNDEIR-SLNVTGIVRPQDVD  196 (238)
Q Consensus       154 isa~V~~VlpNGnL~I~G~k~i~vn~e~~-~i~isGiVRp~DI~  196 (238)
                      +...|+|.|||+++.|+      +.++.+ .-.+||-+|-.-|.
T Consensus         9 ~eG~V~e~lpn~~F~V~------Leng~~vla~isGKmR~~~Ir   46 (71)
T 1hr0_W            9 TEGVVTEALPNATFRVK------LDSGPEILAYISGKMRMHYIR   46 (71)
T ss_dssp             CEEECCCCCTTTBCCCE------ESSSCBCCCEECHHHHHTCCC
T ss_pred             EEEEEEEECCCCEEEEE------ECCCCEEEEEECCHHHHEEEE
T ss_conf             99999998599799999------899999999957755301598


No 11 
>>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} (A:)
Probab=23.88  E-value=36  Score=14.22  Aligned_cols=13  Identities=8%  Similarity=-0.123  Sum_probs=8.7

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             4866689999985
Q gi|254780374|r  223 LRPPIGHQLIENL  235 (238)
Q Consensus       223 ~~~gwl~r~~~~i  235 (238)
                      ..-|||+|+|...
T Consensus        24 neGGWLtqLL~sk   36 (52)
T 1q02_A           24 DEGGWLTRLLQTK   36 (52)
T ss_dssp             CTTSHHHHHHHHT
T ss_pred             CCCHHHHHHHHHC
T ss_conf             7652999999980


No 12 
>>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} (A:194-299,A:368-457)
Probab=23.74  E-value=44  Score=13.67  Aligned_cols=32  Identities=9%  Similarity=0.181  Sum_probs=26.1

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCC
Q ss_conf             55211232236768769999972410100001
Q gi|254780374|r   68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQ   99 (238)
Q Consensus        68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~   99 (238)
                      ..++|.|.+.+.+||.|-+++.|+......+-
T Consensus        73 d~p~la~~~Vr~~GepVa~VvA~t~~~A~~Aa  104 (196)
T 1vlb_A           73 DRPILCDEKVFQYGDCIALVCADSEANARAAA  104 (196)
T ss_dssp             CEESSCSSEECSTTCEEEEEEESSHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCEEEEEECCHHHHHHHH
T ss_conf             66325687799934622799967999999987


No 13 
>>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, daffodil, sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* (A:)
Probab=23.73  E-value=44  Score=13.67  Aligned_cols=18  Identities=22%  Similarity=0.451  Sum_probs=13.8

Q ss_pred             EEEEEECCCCCEEEEEEE
Q ss_conf             999998079728997887
Q gi|254780374|r  156 AIVTAILENGNLIISGSQ  173 (238)
Q Consensus       156 a~V~~VlpNGnL~I~G~k  173 (238)
                      +.+..++.+|||||.++-
T Consensus        83 ~~~l~L~ddGNlvl~~~~  100 (109)
T 3dzw_A           83 NYVCVLQKDRNVVIYGTA  100 (109)
T ss_dssp             CEEEEECTTSCEEEEESC
T ss_pred             CEEEEECCCCCEEEECCC
T ss_conf             889999489739997988


No 14 
>>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} (A:)
Probab=23.45  E-value=45  Score=13.63  Aligned_cols=18  Identities=39%  Similarity=0.654  Sum_probs=13.9

Q ss_pred             EEEEEECCCCCEEEEEEE
Q ss_conf             999998079728997887
Q gi|254780374|r  156 AIVTAILENGNLIISGSQ  173 (238)
Q Consensus       156 a~V~~VlpNGnL~I~G~k  173 (238)
                      +.+..++++|||||.+.-
T Consensus        84 ~~~~~L~ddGNlvl~~~~  101 (109)
T 1kj1_A           84 NYVLVLQEDGNVVIYGSD  101 (109)
T ss_dssp             CCEEEECTTSCEEEECCE
T ss_pred             CEEEEEECCCCEEEECCC
T ss_conf             689999189419997998


No 15 
>>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} (A:520-605)
Probab=23.45  E-value=38  Score=14.06  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEEEEEEEECCEEEEEEEEEECHHHCCCC
Q ss_conf             978877984188799999979847767899
Q gi|254780374|r  169 ISGSQEVRVNDEIRSLNVTGIVRPQDVDAH  198 (238)
Q Consensus       169 I~G~k~i~vn~e~~~i~isGiVRp~DI~~~  198 (238)
                      |+|+.|.+|.++..+|   |+|+..+++..
T Consensus        51 v~g~~Wyrik~~~~~I---GWvKA~nL~~~   77 (86)
T 1m9s_A           51 IEGQLWYRIRTSSTFI---GWTKAANLRAQ   77 (86)
T ss_dssp             ETTEEEEEEECSSSEE---EEEEGGGEECC
T ss_pred             ECCCEEEEEEECCEEE---EEECHHHCCCC
T ss_conf             5793699999699789---74546777763


No 16 
>>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} (A:)
Probab=22.11  E-value=34  Score=14.34  Aligned_cols=19  Identities=5%  Similarity=-0.395  Sum_probs=12.1

Q ss_pred             CCHHHHHHHHHHHHHHHHC
Q ss_conf             9117999999999985433
Q gi|254780374|r    1 MYRYSFIVLCYSSLLFGCH   19 (238)
Q Consensus         1 M~r~~l~~l~~~~lL~GCa   19 (238)
                      |+|+++++++++++++++.
T Consensus         1 Mk~~~~~~~~~~~~~~~~~   19 (215)
T 2i3y_A            1 MHHHHHHSSGVDLGTENLY   19 (215)
T ss_dssp             -------------------
T ss_pred             CCCCCCCCCCCCHHHHHHH
T ss_conf             9754344555101236778


No 17 
>>1n7z_A Baseplate structural protein GP8; bacteriophage T4, dimer, beta sandwich, viral protein; 2.00A {Enterobacteria phage T4} (A:101-204)
Probab=21.80  E-value=48  Score=13.45  Aligned_cols=13  Identities=23%  Similarity=0.519  Sum_probs=11.0

Q ss_pred             CCCCCCCCCEEEE
Q ss_conf             3223676876999
Q gi|254780374|r   74 DSRALNVGDILTV   86 (238)
Q Consensus        74 D~RA~~VGDIiTV   86 (238)
                      |++.+++||||+|
T Consensus         2 np~~f~i~DIVv~   14 (104)
T 1n7z_A            2 DPYTFRINDIVVC   14 (104)
T ss_dssp             CSSCCCTTCEEEE
T ss_pred             CCCCCCCCCCCCC
T ss_conf             4441346765446


No 18 
>>2ijr_A Hypothetical protein API92; structural genomics, PSI, protein structure initiative; 2.70A {Yersinia pseudotuberculosis} (A:30-186)
Probab=21.73  E-value=48  Score=13.42  Aligned_cols=14  Identities=21%  Similarity=0.453  Sum_probs=10.0

Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             99998543367200
Q gi|254780374|r   11 YSSLLFGCHSSISE   24 (238)
Q Consensus        11 ~~~lL~GCas~~~~   24 (238)
                      +-+||+|||.-+++
T Consensus        12 iqLFLAGCAGILkP   25 (157)
T 2ijr_A           12 IRLFLAGCAGILKP   25 (157)
T ss_dssp             HHHHHHHHHTSSCC
T ss_pred             HHHHHHCCCCCCCC
T ss_conf             99998510332455


No 19 
>>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} (B:31-152,B:214-296)
Probab=21.39  E-value=49  Score=13.37  Aligned_cols=34  Identities=18%  Similarity=0.074  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCC
Q ss_conf             5521123223676876999997241010000122
Q gi|254780374|r   68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQTG  101 (238)
Q Consensus        68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~  101 (238)
                      ..++|.|.|.+.+||.|-+++.|+..+-+.+...
T Consensus        69 ~~~~~~~~~v~~~G~~va~VvA~~~~~A~~Aa~~  102 (205)
T 1ffv_B           69 VAAVLADEKVHFQMQEVAIVIADDRYIAADAVEA  102 (205)
T ss_dssp             EEESSCCSEECSTTCEEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEEEECCCEEEEEEECCHHHHHHHHCC
T ss_conf             6524778869977983899998999999998527


No 20 
>>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (B:1-133,B:201-283)
Probab=20.98  E-value=50  Score=13.32  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCC
Q ss_conf             552112322367687699999724101000012
Q gi|254780374|r   68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQT  100 (238)
Q Consensus        68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~  100 (238)
                      ..++|.+.+.+.+||.|-+++.|+..+-..+-.
T Consensus       100 ~~~~la~~~vr~~Gepva~Vva~t~~~a~~Aa~  132 (216)
T 1t3q_B          100 IQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQ  132 (216)
T ss_dssp             EECSSCCSEECSTTCEEEEEEESSHHHHHHHHT
T ss_pred             CCCCCCCCEEEECCCEEEEEEECCHHHHHHHHC
T ss_conf             641146887998798799999899999999823


No 21 
>>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* (B:25-125,B:176-266)
Probab=20.31  E-value=52  Score=13.23  Aligned_cols=34  Identities=9%  Similarity=0.007  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCHHHHCCCCC
Q ss_conf             5521123223676876999997241010000122
Q gi|254780374|r   68 HAALFKDSRALNVGDILTVDIRIDDQAVFDNQTG  101 (238)
Q Consensus        68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~~~~  101 (238)
                      ..++|.|.|-+.+||.|-+++.|+...-..+-..
T Consensus        58 d~p~la~~~Vr~~Gq~va~VvA~~~~~A~~Aa~~   91 (192)
T 2w3s_B           58 PEPVLATGEVHFVGQPIFLVAATSHRAARIAARK   91 (192)
T ss_dssp             CCCSSCCSEECSTTCEEEEEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCEEEECCCEEEEEEECCHHHHHHHHCC
T ss_conf             8603668879987987999998999999999526


Done!