Query gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 238
No_of_seqs 135 out of 642
Neff 6.7
Searched_HMMs 23785
Date Mon May 30 10:26:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780374.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 48.7 7.5 0.00031 17.6 2.0 40 151-194 206-245 (570)
2 1ah9_A IF1, initiation factor 48.7 7.5 0.00032 17.5 2.1 45 153-202 7-53 (71)
3 3i4o_A Translation initiation 46.3 13 0.00055 16.0 3.9 57 153-214 15-77 (79)
4 3h43_A Proteasome-activating n 40.7 16 0.00068 15.5 3.6 46 153-203 19-64 (85)
5 2wg5_A General control protein 40.1 16 0.00069 15.4 3.0 47 153-204 38-84 (109)
6 1y0g_A Protein YCEI; lipid bin 26.1 12 0.00051 16.3 0.1 20 1-20 1-20 (191)
7 1w7f_A Beta-lactamase; hydrola 26.1 11 0.00048 16.4 0.0 22 1-22 10-31 (307)
8 1q02_A Sequestosome 1; helical 25.5 23 0.00095 14.5 1.4 13 223-235 24-36 (52)
9 2a2u_A Protein (alpha-2U-globu 23.1 20 0.00085 14.8 0.8 21 154-174 107-127 (181)
10 2f2f_C CDT C, cytolethal diste 22.7 23 0.00099 14.4 1.1 20 1-22 1-20 (186)
11 2eyx_A V-CRK sarcoma virus CT1 20.1 35 0.0015 13.3 1.5 16 74-89 23-38 (67)
12 2kct_A Cytochrome C-type bioge 20.0 37 0.0015 13.2 3.1 14 183-196 10-23 (94)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=48.72 E-value=7.5 Score=17.57 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=27.0
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHH
Q ss_conf 99999999998079728997887798418879999997984776
Q gi|254780374|r 151 NLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQD 194 (238)
Q Consensus 151 ~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~D 194 (238)
...+.++|..|.....+.|.=- =++..-.++|.||--|+.
T Consensus 206 ~~~~~~vVe~V~~g~~~~v~~~----~~~~~i~v~L~GI~~P~~ 245 (570)
T 3bdl_A 206 AGRSEAVVEYVFSGSRLKLYLP----KETCLITFLLAGIECPRG 245 (570)
T ss_dssp TCEEEEEEEEESSSSEEEEEET----TTTEEEEEEESSEECCCC
T ss_pred CCCCCEEEEEECCCCEEEEEEC----CCCCEEEEEECCCCCCCC
T ss_conf 6865689999847988999988----988199999755238854
No 2
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=48.69 E-value=7.5 Score=17.54 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=32.3
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHH--HCCCCCEEE
Q ss_conf 99999999807972899788779841887999999798477--678997382
Q gi|254780374|r 153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQ--DVDAHNSVS 202 (238)
Q Consensus 153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~--DI~~~NtV~ 202 (238)
.+...|++.||||++.|+=+ |+.+..-+++|-.|-. -|.++..|.
T Consensus 7 e~~G~V~e~lg~~~f~V~l~-----dg~~~la~i~GkmRk~ri~i~~GD~V~ 53 (71)
T 1ah9_A 7 EMQGTVLETLPNTMFRVELE-----NGHVVTAHISGKMRKNYIRILTGDKVT 53 (71)
T ss_dssp ECCEEEEEECSSSEEEEEET-----TSCEEEEEECSSGGGTTCCCCTTCEEC
T ss_pred EEEEEEEEECCCCEEEEEEC-----CCCEEEEEECCHHEEEEEEECCCCEEE
T ss_conf 99999999889969999988-----997999993734502149976999999
No 3
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis}
Probab=46.35 E-value=13 Score=16.01 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=39.8
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHH--HCCCCCEEE----HHEEEEEEEEEE
Q ss_conf 99999999807972899788779841887999999798477--678997382----420554399980
Q gi|254780374|r 153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQ--DVDAHNSVS----YDKIAEARISYG 214 (238)
Q Consensus 153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~--DI~~~NtV~----S~~iAda~I~y~ 214 (238)
.+...|+++||||.+.|+= -|+....-+++|-.|-. -|.++..|. -.+.--++|.|.
T Consensus 15 e~~G~V~e~l~~~~f~V~l-----~ng~~~~a~i~GkmRk~ri~i~~GD~V~Ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIEL-----ENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp EEEEEEEEEETTTEEEEEE-----TTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEEEE-----CCCCEEEEEECCHHHHCEEEECCCCEEEEEECCCCCCCEEEEEE
T ss_conf 9999999988997899997-----99999999957636406088669999999977657894889998
No 4
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=40.66 E-value=16 Score=15.46 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=36.7
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEH
Q ss_conf 999999998079728997887798418879999997984776789973824
Q gi|254780374|r 153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSY 203 (238)
Q Consensus 153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S 203 (238)
.+-++|++++.+|..+|. .-++...++.++.-|.++++.|+-.|.=
T Consensus 19 ~~vgtv~e~~dd~~~iVk-----~s~G~~~~V~v~~~vd~~~L~pG~rVaL 64 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVK-----SSTGPSFLVNVSHFVNPDDLAPGKRVCL 64 (85)
T ss_dssp EEEEEEEEEEETTEEEEE-----ETTSSEEEEEBCTTSCGGGCCTTCEEEE
T ss_pred CEEEEEEEEECCCEEEEE-----ECCCCEEEEECCCCCCHHHCCCCCEEEE
T ss_conf 589999998389869999-----6799889998279879789899999999
No 5
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.06 E-value=16 Score=15.40 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=36.1
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHH
Q ss_conf 9999999980797289978877984188799999979847767899738242
Q gi|254780374|r 153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYD 204 (238)
Q Consensus 153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~ 204 (238)
..-++|++++.++..+|. .-++...++.++.-|.++++.|+..|.=.
T Consensus 38 ~~ig~v~e~~dd~~~iV~-----~s~g~~~~V~v~~~id~~~L~pG~rVaLn 84 (109)
T 2wg5_A 38 LLVGVVSDILEDGRVVVK-----SSTGPKFVVNTSQYINEEELKPGARVALN 84 (109)
T ss_dssp EEEEEEEEECTTSCEEEE-----ETTSCEEEECBCTTSCTTTCCTTCEEEEE
T ss_pred CEEEEEEEEECCCEEEEE-----ECCCCEEEEEECCCCCHHHCCCCCEEEEC
T ss_conf 579999999679818999-----67998899982065188998999999998
No 6
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=26.15 E-value=12 Score=16.26 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHHHHCC
Q ss_conf 91179999999999854336
Q gi|254780374|r 1 MYRYSFIVLCYSSLLFGCHS 20 (238)
Q Consensus 1 M~r~~l~~l~~~~lL~GCas 20 (238)
|+|+++.+.+++++++.|..
T Consensus 1 Mkk~~~~l~~~~l~~~~~~a 20 (191)
T 1y0g_A 1 MKKSLLGLTFASLMFSAGSA 20 (191)
T ss_dssp --------------------
T ss_pred CCHHHHHHHHHHHHHHHCCC
T ss_conf 93369999999999760220
No 7
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=26.12 E-value=11 Score=16.39 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9117999999999985433672
Q gi|254780374|r 1 MYRYSFIVLCYSSLLFGCHSSI 22 (238)
Q Consensus 1 M~r~~l~~l~~~~lL~GCas~~ 22 (238)
|+|.+.++++.+++|+||+...
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~ 31 (307)
T 1w7f_A 10 LKKAAAVLLFSCVALAGCANNQ 31 (307)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999722344
No 8
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A
Probab=25.53 E-value=23 Score=14.54 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=8.9
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 4866689999985
Q gi|254780374|r 223 LRPPIGHQLIENL 235 (238)
Q Consensus 223 ~~~gwl~r~~~~i 235 (238)
..-|||+|+|+..
T Consensus 24 neGGWLt~LL~sk 36 (52)
T 1q02_A 24 DEGGWLTRLLQTK 36 (52)
T ss_dssp CTTSHHHHHHHHT
T ss_pred CCCHHHHHHHHHC
T ss_conf 7653999999980
No 9
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=23.11 E-value=20 Score=14.84 Aligned_cols=21 Identities=0% Similarity=-0.243 Sum_probs=14.5
Q ss_pred EEEEEEEECCCCCEEEEEEEE
Q ss_conf 999999980797289978877
Q gi|254780374|r 154 IAAIVTAILENGNLIISGSQE 174 (238)
Q Consensus 154 isa~V~~VlpNGnL~I~G~k~ 174 (238)
....|+++..+...++-....
T Consensus 107 ~~~~V~~tdy~~yaivy~~~~ 127 (181)
T 2a2u_A 107 NTFTILKTDYDRYVMFHLINF 127 (181)
T ss_dssp EEEEEEEECSSSEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEEEEEEC
T ss_conf 589999944555499999811
No 10
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1
Probab=22.70 E-value=23 Score=14.43 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9117999999999985433672
Q gi|254780374|r 1 MYRYSFIVLCYSSLLFGCHSSI 22 (238)
Q Consensus 1 M~r~~l~~l~~~~lL~GCas~~ 22 (238)
|+|+++..++. ++.+|.+..
T Consensus 1 mkK~~i~f~~~--l~~~~~s~~ 20 (186)
T 2f2f_C 1 MKKYLLSFLLS--MILTLTSHA 20 (186)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHH--HHHHCCCCC
T ss_conf 93248999999--997511455
No 11
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=20.13 E-value=35 Score=13.33 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=11.6
Q ss_pred CCCCCCCCCEEEEEEE
Q ss_conf 3223676876999997
Q gi|254780374|r 74 DSRALNVGDILTVDIR 89 (238)
Q Consensus 74 D~RA~~VGDIiTV~i~ 89 (238)
|-=+++.||||+|+-.
T Consensus 23 ~eL~f~~GDvi~V~~~ 38 (67)
T 2eyx_A 23 TALALEVGELVKVTKI 38 (67)
T ss_dssp SBCCBCSSEEEEEEEE
T ss_pred CCCCCCCCCEEEEEEE
T ss_conf 8867889999999897
No 12
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=20.05 E-value=37 Score=13.20 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=6.7
Q ss_pred EEEEEEEECHHHCC
Q ss_conf 99999798477678
Q gi|254780374|r 183 SLNVTGIVRPQDVD 196 (238)
Q Consensus 183 ~i~isGiVRp~DI~ 196 (238)
.||+.|+|-+.-|.
T Consensus 10 ~vRvgG~V~~gSi~ 23 (94)
T 2kct_A 10 TVRLFGTVAADGLT 23 (94)
T ss_dssp CEEEEEEECSTTCE
T ss_pred EEEEEEEEECCCEE
T ss_conf 79980599689399
Done!