Query gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 238
No_of_seqs 135 out of 642
Neff 6.7
Searched_HMMs 13730
Date Wed Jun 1 03:15:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780374.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ah9a_ b.40.4.5 (A:) Translat 42.9 6 0.00044 16.6 2.1 45 153-202 7-53 (71)
2 d1kafa_ d.199.1.1 (A:) DNA-bin 26.0 16 0.0012 13.9 2.6 19 156-174 46-64 (108)
3 d2k0bx1 a.5.2.1 (X:1-52) Seque 23.0 13 0.00097 14.5 1.1 13 223-235 24-36 (52)
4 d1gcqc_ b.34.2.1 (C:) Vav N-te 20.3 21 0.0015 13.2 1.8 15 74-88 25-39 (69)
5 d1vlba3 d.41.1.1 (A:194-310) A 20.0 21 0.0016 13.2 2.2 31 68-98 73-103 (117)
6 d2rdea1 b.45.2.1 (A:138-247) H 19.5 22 0.0016 13.1 2.1 18 74-91 38-55 (110)
7 d1qupa2 d.58.17.1 (A:2-73) Cop 19.1 11 0.0008 15.0 -0.1 28 169-196 30-57 (72)
8 d2bm3a1 b.2.2.2 (A:5-166) Scaf 17.4 24 0.0018 12.8 2.5 22 71-92 7-28 (162)
9 d1snoa_ b.40.1.1 (A:) Staphylo 17.3 25 0.0018 12.8 3.3 13 180-192 25-37 (136)
10 d2ijra1 e.66.1.1 (A:3-282) Hyp 16.7 25 0.0018 12.7 1.8 15 10-24 38-52 (280)
No 1
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=42.93 E-value=6 Score=16.64 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=32.8
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHH--HCCCCCEEE
Q ss_conf 99999999807972899788779841887999999798477--678997382
Q gi|254780374|r 153 LIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQ--DVDAHNSVS 202 (238)
Q Consensus 153 ~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~--DI~~~NtV~ 202 (238)
.+...|++.||||++.|+= -|+....-+++|-.|-. -|.++..|.
T Consensus 7 e~~G~V~e~lg~~~f~V~l-----~ng~~~~a~i~Gkmrk~ri~i~~GD~V~ 53 (71)
T d1ah9a_ 7 EMQGTVLETLPNTMFRVEL-----ENGHVVTAHISGKMRKNYIRILTGDKVT 53 (71)
T ss_dssp ECCEEEEEECSSSEEEEEE-----TTSCEEEEEECSSGGGTTCCCCTTCEEC
T ss_pred EEEEEEEEECCCCEEEEEE-----CCCCEEEEECCCHHHEEEEEECCCCEEE
T ss_conf 9999999986998899996-----7997999984643430279964999999
No 2
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=25.98 E-value=16 Score=13.93 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=16.1
Q ss_pred EEEEEECCCCCEEEEEEEE
Q ss_conf 9999980797289978877
Q gi|254780374|r 156 AIVTAILENGNLIISGSQE 174 (238)
Q Consensus 156 a~V~~VlpNGnL~I~G~k~ 174 (238)
-+=.||+-||+|.|.|.|.
T Consensus 46 iR~fEi~n~G~~RIfgYkm 64 (108)
T d1kafa_ 46 IRNFEINNNGNMRIFGYKM 64 (108)
T ss_dssp EEEEEECTTSEEEEEEESC
T ss_pred EEEEEEECCCCEEEEEEEC
T ss_conf 2689982488189986513
No 3
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.04 E-value=13 Score=14.47 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 4866689999985
Q gi|254780374|r 223 LRPPIGHQLIENL 235 (238)
Q Consensus 223 ~~~gwl~r~~~~i 235 (238)
..-|||+|+|+..
T Consensus 24 neGGWLt~LL~sk 36 (52)
T d2k0bx1 24 DEGGWLTRLLQTK 36 (52)
T ss_dssp CSSSCHHHHHHHT
T ss_pred CCCHHHHHHHHHC
T ss_conf 7643999999980
No 4
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.27 E-value=21 Score=13.23 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=11.1
Q ss_pred CCCCCCCCCEEEEEE
Q ss_conf 322367687699999
Q gi|254780374|r 74 DSRALNVGDILTVDI 88 (238)
Q Consensus 74 D~RA~~VGDIiTV~i 88 (238)
|.=.++.||||+|+=
T Consensus 25 ~eLsf~~GD~i~Vl~ 39 (69)
T d1gcqc_ 25 PFLRLNPGDIVELTK 39 (69)
T ss_dssp CBCCBCTTCEEEEEE
T ss_pred CEEEECCCCEEEEEE
T ss_conf 871085999999989
No 5
>d1vlba3 d.41.1.1 (A:194-310) Aldehyde oxidoreductase, domain 3 {Desulfovibrio gigas [TaxId: 879]}
Probab=19.96 E-value=21 Score=13.19 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHHHCC
Q ss_conf 5521123223676876999997241010000
Q gi|254780374|r 68 HAALFKDSRALNVGDILTVDIRIDDQAVFDN 98 (238)
Q Consensus 68 ~~~lf~D~RA~~VGDIiTV~i~E~~~a~~~~ 98 (238)
..++|.+-|-+.+|+.|-++|.|+...-+.+
T Consensus 73 ~~pila~~~Vry~GqpVA~VvA~t~~~A~~A 103 (117)
T d1vlba3 73 DRPILCDEKVFQYGDCIALVCADSEANARAA 103 (117)
T ss_dssp CEESSCSSEECSTTCEEEEEEESSHHHHHHH
T ss_pred CCCCCCCCCEEEECCCEEEEEECCHHHHHHH
T ss_conf 6641277620450253799985989999999
No 6
>d2rdea1 b.45.2.1 (A:138-247) Hypothetical protein VCA0042, C-terminal domain {Vibrio cholerae O395 [TaxId: 345073]}
Probab=19.48 E-value=22 Score=13.12 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=14.1
Q ss_pred CCCCCCCCCEEEEEEEEC
Q ss_conf 322367687699999724
Q gi|254780374|r 74 DSRALNVGDILTVDIRID 91 (238)
Q Consensus 74 D~RA~~VGDIiTV~i~E~ 91 (238)
--|.++|||-||+.|.-.
T Consensus 38 ~sr~~qvgd~v~l~v~~~ 55 (110)
T d2rdea1 38 LGKTYQVGDLVALEIFSD 55 (110)
T ss_dssp TSCCCCTTCEEEEEEBSS
T ss_pred CCCCEECCCEEEEEEECC
T ss_conf 998603187689999737
No 7
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.07 E-value=11 Score=15.02 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=21.2
Q ss_pred EEEEEEEEEECCEEEEEEEEEECHHHCC
Q ss_conf 9788779841887999999798477678
Q gi|254780374|r 169 ISGSQEVRVNDEIRSLNVTGIVRPQDVD 196 (238)
Q Consensus 169 I~G~k~i~vn~e~~~i~isGiVRp~DI~ 196 (238)
+.|-+.+.+|-+.+.+.|.|-+.|++|-
T Consensus 30 ~~gV~~v~vdl~~~~v~V~~~~~~~~i~ 57 (72)
T d1qupa2 30 VPGINSLNFDIEQQIMSVESSVAPSTII 57 (72)
T ss_dssp CTTEEEEEEETTTTEEEEEESSCHHHHH
T ss_pred CCCEEEEEEECCCCEEEEEEECCHHHHH
T ss_conf 9980499998889999997548999999
No 8
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=17.43 E-value=24 Score=12.83 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCEEEEEEEECC
Q ss_conf 1123223676876999997241
Q gi|254780374|r 71 LFKDSRALNVGDILTVDIRIDD 92 (238)
Q Consensus 71 lf~D~RA~~VGDIiTV~i~E~~ 92 (238)
+==|+..-.||||||-.|..+.
T Consensus 7 ~~lDKt~a~vGDiItAtI~v~n 28 (162)
T d2bm3a1 7 LKFDRNKGEVGDILIGTVRINN 28 (162)
T ss_dssp EEESCSCCCTTCEEEEEEEEES
T ss_pred EEECCCCEECCCEEEEEEEECC
T ss_conf 9972552102438999999536
No 9
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]}
Probab=17.27 E-value=25 Score=12.80 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=4.9
Q ss_pred CEEEEEEEEEECH
Q ss_conf 8799999979847
Q gi|254780374|r 180 EIRSLNVTGIVRP 192 (238)
Q Consensus 180 e~~~i~isGiVRp 192 (238)
+...+||.||==|
T Consensus 25 ~~~~vRL~GIdaP 37 (136)
T d1snoa_ 25 QPMTFRLLLVDTP 37 (136)
T ss_dssp EEEEEEETTEECC
T ss_pred CEEEEEEEEECCC
T ss_conf 6889999877366
No 10
>d2ijra1 e.66.1.1 (A:3-282) Hypothetical protein api92 {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=16.73 E-value=25 Score=12.72 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=10.6
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999998543367200
Q gi|254780374|r 10 CYSSLLFGCHSSISE 24 (238)
Q Consensus 10 ~~~~lL~GCas~~~~ 24 (238)
.+-++|+|||.-+++
T Consensus 38 si~LflAGcAGiLkp 52 (280)
T d2ijra1 38 SIRLFLAGCAGILKP 52 (280)
T ss_dssp HHHHHHHHHHTSSCC
T ss_pred HHHHHHHCCCCCCCC
T ss_conf 899998600232455
Done!