RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
(238 letters)
>gnl|CDD|178946 PRK00249, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 222
Score = 218 bits (558), Expect = 1e-57
Identities = 85/228 (37%), Positives = 121/228 (53%), Gaps = 14/228 (6%)
Query: 14 LLFGC--HSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAAL 71
LL GC + + G P +P+ + N + S ++ SLW + L
Sbjct: 6 LLAGCASIPRLPLVGGAPAAAPVEAPTPLPNP--------APNGSIFQAGSLWNYGYQPL 57
Query: 72 FKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG-QQTPQMNGNL 130
FKD RA NVGDILTV ++ + A N T RSR++S + G SLFG N +L
Sbjct: 58 FKDRRARNVGDILTVVLQENTSASKSNSTNRSRDSSTN---FGLPSLFGYLNGLDANASL 114
Query: 131 NYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIV 190
+ GKGS SR+ L I VT +L NGNL+I G +EVRVN L V+G+V
Sbjct: 115 ETSSDNSFKGKGSASRSNTLTGTITVTVTQVLPNGNLVIRGEKEVRVNQGTEFLRVSGVV 174
Query: 191 RPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238
RP+D+ N++S +IA+ARISYGG+G ++ +P + ++LSP
Sbjct: 175 RPRDISGDNTISSTRIADARISYGGRGYISDAQQPGWLQRFFDSLSPF 222
>gnl|CDD|171723 PRK12788, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 234
Score = 176 bits (447), Expect = 5e-45
Identities = 92/231 (39%), Positives = 136/231 (58%), Gaps = 17/231 (7%)
Query: 14 LLFGCHSSISEITGIPQMSPMGSSLDENNR-MPFLGIDFKNSDSTKKSYSLWRDSHAALF 72
L GC +++++ P+MSP+G L + R +P + SLW D L+
Sbjct: 15 ALAGCANNLADALQAPRMSPIGQGLRADARAIPVE----PRMRTPVSRRSLW-DERTDLY 69
Query: 73 KDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLS-----GGFSLFGQQTPQMN 127
+D RA GD+LTV I ++D+A DN+T RSR++ L +S G+ T ++
Sbjct: 70 RDPRASRTGDLLTVTISMNDKATLDNKTDRSRDSQTKFGLDYLAEFLPWSDKGKLTANVS 129
Query: 128 GNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVT 187
++ G G I R E++ +AAIV +L NGNL+ISGSQEVRVN E+R LNV
Sbjct: 130 SQ------TSTKGTGKIDRTEEVKFSVAAIVVDVLPNGNLLISGSQEVRVNYEMRVLNVG 183
Query: 188 GIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238
GIVRP D+ +N+++Y+K+AEARISYGG+GR E+ +P GHQ+ + + P
Sbjct: 184 GIVRPLDITRNNTIAYEKVAEARISYGGRGRLMEVQQPAWGHQVYDQVVPF 234
>gnl|CDD|171670 PRK12696, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 236
Score = 97.5 bits (243), Expect = 3e-21
Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 29/250 (11%)
Query: 1 MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS 60
R L LL GC ++ + + P ++P + ++ G F +S++
Sbjct: 2 RKRLLATSLAVL-LLAGCSAARQQPSPAPPVTPPPAYVEPEEPADNPGSLFSDSEAD--- 57
Query: 61 YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG 120
LF DSRA VGDI+ V I + +A T + ++ +S + FG
Sbjct: 58 ---------LLFADSRARRVGDIVLVKIVENSKAKNKADTTADKKSTNEYGVS---AFFG 105
Query: 121 QQTPQMNGNLNYDGGGAS-------------SGKGSISRAEKLNLLIAAIVTAILENGNL 167
Q + +N GGG SG G R + IAA V +L G +
Sbjct: 106 QDSVAINPFNPLMGGGVGTDPLLKTSSTSKFSGTGETKRESTVTATIAARVVRVLPGGLM 165
Query: 168 IISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPI 227
+ G++E RVNDE + + V+G+VRP+D+ NSV ++A+ARI Y GKG + RP
Sbjct: 166 QVEGARETRVNDETQYIVVSGLVRPRDIGPDNSVMSTQLADARIEYYGKGVLADKQRPGW 225
Query: 228 GHQLIENLSP 237
+L++N+ P
Sbjct: 226 FTRLMDNVWP 235
>gnl|CDD|183690 PRK12698, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 224
Score = 86.3 bits (214), Expect = 6e-18
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 62 SLWRDSHAA-LFKDSRALNVGDILTVDIRIDDQA--VFDNQTGRSRNNSLHRKLSGGFSL 118
S+++DS A L+ D +A VGDI+TV ++ QA +N+ + + SL +GG ++
Sbjct: 47 SIFQDSQANSLYSDIKAHKVGDIITVVLKESTQAKKSANNEIKKGSDLSLDPIYAGGGNV 106
Query: 119 FGQQTPQMNGN---LNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEV 175
+ G L Y + + ++ L+ I+A V +L NGNL+I G + +
Sbjct: 107 ------SIGGVPLDLGYKDSMNTKRESDADQSNSLSGSISANVMQVLPNGNLVIRGEKWI 160
Query: 176 RVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTE 221
+N+ + +TGIVR QD+ N++ ++A ARI Y G G +
Sbjct: 161 SINNGDEFIRLTGIVRSQDITPDNTIDSTRVANARIQYSGTGTFAD 206
>gnl|CDD|183691 PRK12701, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 230
Score = 81.0 bits (199), Expect = 3e-16
Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 1 MYRYSFIVLCYSS-LLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKK 59
M R + V C ++ LLFGC + G D + P + + K
Sbjct: 1 MNRLNIAVSCLATALLFGCEALHPPAPG-----------DNPDYAPTYPVTPDPKELRKV 49
Query: 60 SYSLWRDSHA-ALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSL 118
S +++ A LF+ RA + GDILTV + I+ N T R N + + F
Sbjct: 50 SGAIYSSETALPLFETPRARHPGDILTVYL-IEKTDAQKNATTTQRKNDTTKITNKLF-- 106
Query: 119 FGQQTPQMNG---NLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEV 175
G+ +G + + D +G+G + KL I+ V +L NGN+++ G + V
Sbjct: 107 LGRPISLGSGYSMDFDLDNQRQFNGEGRSIQNNKLAGSISVTVAKVLANGNMVVQGEKWV 166
Query: 176 RVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGR 218
R+N + ++GIVRPQD+ A N+++ D+IA ARISYGG G+
Sbjct: 167 RINQGNEFVRLSGIVRPQDIKADNTITSDRIANARISYGGTGQ 209
>gnl|CDD|183507 PRK12407, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 221
Score = 78.4 bits (193), Expect = 1e-15
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 70 ALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNG- 128
+L +D RA VGDILTV + Q+ +T + N + G + G++ ++ G
Sbjct: 57 SLLQDRRAYRVGDILTVILDESTQSSKQAKTNFGKKNDVS---LGVPEVLGKKLDKLGGS 113
Query: 129 ---NLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLN 185
++DG S+ + + R I V +L NG L+I G + + +N +
Sbjct: 114 ISGKRDFDGSATSAQQNML-RGS-----ITVAVHQVLPNGVLVIRGEKWLTLNQGDEYMR 167
Query: 186 VTGIVRPQDVDAHNSVSYDKIAEARISYGGKG 217
VTG+VR D+ NSVS +IA ARISY G+G
Sbjct: 168 VTGLVRADDIARDNSVSSQRIANARISYAGRG 199
>gnl|CDD|139164 PRK12700, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 230
Score = 78.2 bits (192), Expect = 2e-15
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 15/159 (9%)
Query: 71 LFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQ----- 125
LF+D R NVGDI+T+ V + +T ++ + + G +L P+
Sbjct: 64 LFEDRRPRNVGDIVTI--------VLEEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGV 115
Query: 126 MNGNLNYD--GGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRS 183
+N L+ D GG ++G G S I V +L NGNL I+G +++ +N
Sbjct: 116 INDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGEKQIAINRGSEY 175
Query: 184 LNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTEL 222
+ +G+V P+ + N+VS ++A+ARI Y KG E+
Sbjct: 176 VRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEV 214
>gnl|CDD|183689 PRK12697, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 226
Score = 77.2 bits (190), Expect = 3e-15
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 71 LFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKL-SGGF--SLFGQQTPQMN 127
LF+D R NVGDILT+ I + A + +R + + + GF LF +
Sbjct: 62 LFEDQRPRNVGDILTIVIAENINATKSSGANTNRQGNTDFDVPTAGFLGGLFNK------ 115
Query: 128 GNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVT 187
NL+ G + G S A N I VT +L NGNL++SG +++ +N + +
Sbjct: 116 ANLSAQGANKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFS 175
Query: 188 GIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTE 221
G+V P + NSV ++A+ARI Y KG E
Sbjct: 176 GVVNPNTISGANSVYSTQVADARIEYSAKGYINE 209
>gnl|CDD|105864 PRK12699, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 246
Score = 61.1 bits (148), Expect = 2e-10
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 65 RDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSL-----F 119
R + LF+D RA +GD + V + + +T S+ + + + +G SL
Sbjct: 75 RGRYHPLFEDRRARQIGDTIIV--------LLNEKTNASKKSGSNAQRNGDISLSVPSFL 126
Query: 120 GQQTPQMNGNLNYDGGGASS----GKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEV 175
G + +L D +SS GKG S I V IL NGNL++SG +++
Sbjct: 127 GLPFKSIFQDL--DLEASSSNKFDGKGESSSNNNFTGTITVTVVDILPNGNLLVSGEKQI 184
Query: 176 RVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTE 221
+N + ++G++ P +V +N+VS ++A+ARI Y G G E
Sbjct: 185 GINQGHEFIRLSGVINPINV-INNTVSSIQVADARIEYRGNGYLDE 229
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 33.7 bits (78), Expect = 0.039
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 37/117 (31%)
Query: 135 GGASSGKGSISR--AEKLNLL-----------------------IAAIVTAILENGNLII 169
G A +GK +++R A+KL LL + +L + + +
Sbjct: 291 GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIEL 350
Query: 170 S----GSQEVRVN-----DEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKG 217
Q V +N + IRS VT V + A +V + + + G KG
Sbjct: 351 KPSSGSPQRVWINGEDVTEAIRSPEVTSSVSA--IAAQPAVRQALVKQQQ-RIGEKG 404
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 28.3 bits (63), Expect = 1.9
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 4 YSFIVLCYSS----LLFGCHSSISEITGIPQMSPMGSSLDE 40
+SF+ L + L + +SSI + + + ++
Sbjct: 367 FSFMSLVLCAAVWLLRWAQNSSIHPLLSERPFLTVEALKEK 407
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 27.8 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 42 NRMPFLGIDFKNSDSTKKSYSLWRD--SHAALF 72
N + FLGID ++ ++W SHAA+F
Sbjct: 565 NLVAFLGID--GPNTLAGRIAMWHGKGSHAAIF 595
>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB.
In prokaryotes, the incorporation of selenocysteine as
the 21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes the
elongation factor SelB, a close homolog rf EF-Tu. It may
function by replacing EF-Tu. A C-terminal domain not
found in EF-Tu is in all SelB sequences in the seed
alignment except that from Methanococcus jannaschii.
This model does not find an equivalent protein for
eukaryotes.
Length = 581
Score = 27.1 bits (60), Expect = 3.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 172 SQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARIS 212
S EV+V D +R L + VR + + A N A RI+
Sbjct: 200 SGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIA 240
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 26.9 bits (60), Expect = 4.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 68 HAALFKDSRALNVGDILTVDIRIDD 92
AL KD R + D+RID
Sbjct: 2 RDALLKDGRVYYNNSLQPRDVRIDG 26
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 26.6 bits (60), Expect = 5.7
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 135 GGASSGKGSISR--AEKLNL 152
G A SGKG++++ A+KL
Sbjct: 11 GPAGSGKGTVAKILAKKLGF 30
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 26.7 bits (59), Expect = 5.8
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 143 SISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAH-NSV 201
++SR +KLN L LE N IS +++ + +IR + VTG R V A +
Sbjct: 14 TMSRPDKLNALN-------LEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF 66
Query: 202 SYDKIAEARISY 213
+ D + R ++
Sbjct: 67 APDFAIDLRETF 78
>gnl|CDD|181909 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 26.6 bits (60), Expect = 5.9
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 143 SISRAEKLNLLIAAIVTAILENGNLII-SGSQEVRVNDEI 181
+S + I V AI G LII G + DE+
Sbjct: 169 PLSDLREHFPDIDVRVVAIFRGGRLIIPRGDTVIEAGDEV 208
>gnl|CDD|182032 PRK09695, PRK09695, glycolate transporter; Provisional.
Length = 560
Score = 26.6 bits (58), Expect = 6.0
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 165 GNLIISGSQEVRVNDEIR-SLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELL 223
G+L + +Q++ V+D + + N +G V + +S IA A + G GR +EL
Sbjct: 476 GSLQSTTAQQINVSDTLLVAANTSGGVTGK------MISPQSIAVACAATGMVGRESELF 529
Query: 224 RPPIGHQLI 232
R + H LI
Sbjct: 530 RYTVKHSLI 538
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 26.2 bits (57), Expect = 7.4
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 77 ALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGG 136
A +V +I + + I+D+A+ + T + NN S+FG P
Sbjct: 7 AEDVFNISRLYLYINDKAILKDITIKIPNN----------SIFGIMGP------------ 44
Query: 137 ASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVD 196
SG G + + LN LI + I +G ++ G ++ D I+ G+V Q
Sbjct: 45 --SGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI-DAIKLRKEVGMVFQQPNP 101
Query: 197 AHNSVSYDKIAEARISYGGKGR 218
+ YD IA S+G K +
Sbjct: 102 FPHLSIYDNIAYPLKSHGIKEK 123
>gnl|CDD|162353 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production.
Length = 392
Score = 26.2 bits (58), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 192 PQDVDAHNSVSYDKI---AEARISYGGKGRTTELL 223
P +V+ V +I A+A I++GG T E L
Sbjct: 274 PPNVEVRQWVPQLEILKKADAFITHGGMNSTMEAL 308
>gnl|CDD|185135 PRK15213, PRK15213, fimbrial outer membrane usher protein PefC;
Provisional.
Length = 797
Score = 25.9 bits (57), Expect = 9.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 100 TGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSIS 145
T R R+ L+ + Q NG L++ GGG +SG S+S
Sbjct: 586 TNRDRDGGRSSSLNASYGF---DRAQTNGMLSHQGGGNTSGSVSVS 628
>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional.
Length = 644
Score = 26.0 bits (58), Expect = 10.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 64 WRDSHAALFKDS 75
WR HA +FKD
Sbjct: 351 WRKQHALVFKDR 362
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.134 0.381
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,823,968
Number of extensions: 237582
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 26
Length of query: 238
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,028,145
Effective search space: 592137315
Effective search space used: 592137315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)