BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62] (238 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 238 Score = 486 bits (1251), Expect = e-139, Method: Compositional matrix adjust. Identities = 238/238 (100%), Positives = 238/238 (100%) Query: 1 MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS 60 MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS Sbjct: 1 MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS 60 Query: 61 YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG 120 YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG Sbjct: 61 YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG 120 Query: 121 QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDE 180 QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDE Sbjct: 121 QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDE 180 Query: 181 IRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238 IRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL Sbjct: 181 IRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238 >gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 24.6 bits (52), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Query: 172 SQEVRVNDEIR-----SLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLR 224 SQ + +E+R +L++ GI+ D+ NS+S +++ R + GGK T + R Sbjct: 164 SQLLETVEEVRRTVNSALDIQGIILTM-FDSRNSLSQQVVSDVRKNLGGKVYNTVIPR 220 >gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D [Candidatus Liberibacter asiaticus str. psy62] Length = 340 Score = 23.5 bits (49), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 12 SSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAAL 71 ++LL+ CH+++S I G+ + + LD++ + + KN + +K + D H Sbjct: 123 NALLYHCHNNLSSINGVKRPG-IVHRLDKDTT--GVMVVAKNDLAHQKLSEQFVD-HGKS 178 Query: 72 FKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSG 114 + RA + I + D + + GR ++N L R + G Sbjct: 179 TRLKRAYYA---MVWGIPLPDSGIINAPLGRCKSNRLRRAVKG 218 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.134 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,041 Number of Sequences: 1233 Number of extensions: 6269 Number of successful extensions: 14 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 4 length of query: 238 length of database: 328,796 effective HSP length: 71 effective length of query: 167 effective length of database: 241,253 effective search space: 40289251 effective search space used: 40289251 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 37 (18.9 bits)