BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (238 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780374|ref|YP_003064787.1| flagellar basal body L-ring protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 238

 Score =  486 bits (1251), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query: 1   MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS 60
           MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS
Sbjct: 1   MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKS 60

Query: 61  YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG 120
           YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG
Sbjct: 61  YSLWRDSHAALFKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG 120

Query: 121 QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDE 180
           QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDE
Sbjct: 121 QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILENGNLIISGSQEVRVNDE 180

Query: 181 IRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238
           IRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL
Sbjct: 181 IRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238


>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 265

 Score = 24.6 bits (52), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 172 SQEVRVNDEIR-----SLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLR 224
           SQ +   +E+R     +L++ GI+     D+ NS+S   +++ R + GGK   T + R
Sbjct: 164 SQLLETVEEVRRTVNSALDIQGIILTM-FDSRNSLSQQVVSDVRKNLGGKVYNTVIPR 220


>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 340

 Score = 23.5 bits (49), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 12  SSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAAL 71
           ++LL+ CH+++S I G+ +   +   LD++     + +  KN  + +K    + D H   
Sbjct: 123 NALLYHCHNNLSSINGVKRPG-IVHRLDKDTT--GVMVVAKNDLAHQKLSEQFVD-HGKS 178

Query: 72  FKDSRALNVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSG 114
            +  RA      +   I + D  + +   GR ++N L R + G
Sbjct: 179 TRLKRAYYA---MVWGIPLPDSGIINAPLGRCKSNRLRRAVKG 218


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.134    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,041
Number of Sequences: 1233
Number of extensions: 6269
Number of successful extensions: 14
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 238
length of database: 328,796
effective HSP length: 71
effective length of query: 167
effective length of database: 241,253
effective search space: 40289251
effective search space used: 40289251
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 37 (18.9 bits)