Query         gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 175
No_of_seqs    153 out of 463
Neff          5.9 
Searched_HMMs 33803
Date          Wed Jun  1 12:26:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780375.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2oux_A Magnesium transporter;  98.2 7.3E-06 2.2E-10   56.0   7.5   56  108-163    20-75  (82)
  2 >2yvy_A MGTE, Mg2+ transporter  98.0 2.8E-05 8.3E-10   52.3   7.1   59  105-163    15-76  (82)
  3 >2zy9_A Mg2+ transporter MGTE;  97.9 8.3E-05 2.5E-09   49.3   8.1   62  104-165    65-126 (158)
  4 >2zy9_A Mg2+ transporter MGTE;  97.5 0.00027 7.8E-09   46.2   6.7   52  107-158    56-107 (158)
  5 >2yvy_A MGTE, Mg2+ transporter  97.5 0.00039 1.2E-08   45.1   7.4   48  116-163     2-49  (82)
  6 >2oux_A Magnesium transporter;  97.4 0.00017 5.2E-09   47.3   4.6   60  105-164     3-64  (82)
  7 >1lkv_X Flagellar motor switch  97.0  0.0017   5E-08   41.1   5.6   61  107-167     4-64  (65)
  8 >1lkv_X Flagellar motor switch  94.8   0.066 1.9E-06   31.0   5.5   48  103-150    12-59  (65)
  9 >1qc7_A Protein (FLIG); flagel  87.5     1.8 5.4E-05   21.9   6.8   59  112-170     8-66  (101)
 10 >1lkv_X Flagellar motor switch  86.8       2 5.9E-05   21.7   7.8   58  113-170     3-60  (95)
 11 >1lkv_X Flagellar motor switch  86.1     1.4 4.2E-05   22.6   4.8   34  129-162     4-40  (45)
 12 >3lay_A Zinc resistance-associ  66.9     7.9 0.00023   17.9  10.2   43   84-126   114-156 (175)
 13 >1m1j_A Fibrinogen alpha subun  64.5     8.8 0.00026   17.6   7.1   26   69-94      3-28  (373)
 14 >1deq_A Fibrinogen (alpha chai  60.9      10  0.0003   17.2   9.3   43   59-101     4-46  (288)
 15 >2j69_A Bacterial dynamin-like  60.7      10 0.00031   17.2   8.2   34   64-97    263-297 (300)
 16 >1eex_A Propanediol dehydratas  55.0      10  0.0003   17.2   2.8   38  105-142    83-120 (241)
 17 >3gpv_A Transcriptional regula  52.9      14 0.00041   16.4   6.0   58   43-102    21-78  (92)
 18 >2oqq_A Transcription factor H  32.0      29 0.00087   14.3   6.0   33   59-91      6-38  (42)
 19 >1wlq_A Geminin; coiled-coil;   29.5      32 0.00096   14.0   7.5   62   47-114    20-81  (83)
 20 >3efg_A Protein SLYX homolog;   28.1      34   0.001   13.9   5.4   43   57-99     19-61  (78)
 21 >1r48_A Proline/betaine transp  27.6      35   0.001   13.8   4.0   22   68-89      6-27  (33)
 22 >3k8x_A Acetyl-COA carboxylase  27.3      29 0.00086   14.3   1.5   51   73-126    64-116 (117)
 23 >3gp4_A Transcriptional regula  25.1      39  0.0011   13.5   8.0   55   59-113    17-71  (82)
 24 >2p7v_A Regulator of sigma D;   25.0      39  0.0012   13.5   2.5   48   21-68     30-77  (81)
 25 >2gtq_A Aminopeptidase N; alan  25.0      32 0.00093   14.1   1.3   18  150-167    21-38  (73)
 26 >2ovr_B FBW7, F-BOX/WD repeat   23.9      16 0.00046   16.0  -0.5   36  110-145     6-41  (55)
 27 >1jb0_I Photosystem 1 reaction  22.9      43  0.0013   13.3   2.5   20    2-26     13-32  (38)
 28 >2zhg_A Redox-sensitive transc  22.4      44  0.0013   13.2   4.5   30   65-94     41-70  (103)
 29 >1fs1_A SKP2 F-BOX, cyclin A/C  21.8      38  0.0011   13.6   1.2   31  116-146     2-32  (53)

No 1  
>>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140)
Probab=98.18  E-value=7.3e-06  Score=56.02  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=53.4

Q ss_pred             HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99995199899999996379899999997299899999996299999999999995
Q gi|254780375|r  108 LDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA  163 (175)
Q Consensus       108 v~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la  163 (175)
                      .+|+++|+++.++.+++.|+.|+++++|..|+++....||..|+++.+..+..+|+
T Consensus        20 ~~ii~~l~~~~~~~il~~l~~Dd~adll~~lp~~~~~~il~~l~~~~r~~i~~ll~   75 (82)
T 2oux_A           20 KDYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSSEEAGEIKELLH   75 (82)
T ss_dssp             THHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred             HHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999689999999998657046667788620888889987301457899999752


No 2  
>>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:56-137)
Probab=97.97  E-value=2.8e-05  Score=52.32  Aligned_cols=59  Identities=10%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHH---HHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9999999519989999999637989999999729989---9999996299999999999995
Q gi|254780375|r  105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPR---QSSLIMSKMNPKSATMITNVVA  163 (175)
Q Consensus       105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~---~~a~IL~~M~p~~Aa~it~~la  163 (175)
                      ..-..+++.|+++.++.+++.|++|+++++|..|+.+   .+..||+.|+++.+.+|..+|+
T Consensus        15 ~~q~~li~~l~~~~~~~il~~m~~DD~~dll~~Lp~~~~~~~~~iL~~l~~e~r~~i~~Ll~   76 (82)
T 2yvy_A           15 EEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALAR   76 (82)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999998501789999987516126899998641244679999971488678999998742


No 3  
>>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158)
Probab=97.87  E-value=8.3e-05  Score=49.33  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             99999999519989999999637989999999729989999999629999999999999527
Q gi|254780375|r  104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANM  165 (175)
Q Consensus       104 ~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~  165 (175)
                      .+..+.++..|+|+.++.+|++|+++....|+..|+++.++.+++.|+|++++.|...|...
T Consensus        65 ~~~~~~il~~l~~~~~~~vl~~l~~~~~~~i~~~l~~~~~~~~l~~l~~dd~a~il~~l~~~  126 (158)
T 2zy9_A           65 GEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKE  126 (158)
T ss_dssp             HHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHH
T ss_conf             99999999959975688999849999999999859999999999839956899998726354


No 4  
>>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158)
Probab=97.55  E-value=0.00027  Score=46.15  Aligned_cols=52  Identities=15%  Similarity=0.336  Sum_probs=17.6

Q ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             9999951998999999963798999999972998999999962999999999
Q gi|254780375|r  107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI  158 (175)
Q Consensus       107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~i  158 (175)
                      ++.+++.|+|+.++.++..|+++.+++||..|++.....|+..|+++.++.+
T Consensus        56 iA~~L~~l~~~~~~~il~~l~~~~~~~vl~~l~~~~~~~i~~~l~~~~~~~~  107 (158)
T 2zy9_A           56 LLALWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREI  107 (158)
T ss_dssp             HHHGGGGSCHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
T ss_conf             9999981999999999995997568899984999999999985999999999


No 5  
>>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:56-137)
Probab=97.54  E-value=0.00039  Score=45.10  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             899999996379899999997299899999996299999999999995
Q gi|254780375|r  116 SDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA  163 (175)
Q Consensus       116 p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la  163 (175)
                      |+.+|.+|++|+++....++..|+.++.+.|++.|+|+.++.+.+.|-
T Consensus         2 ~e~~aev~~el~~~~q~~li~~l~~~~~~~il~~m~~DD~~dll~~Lp   49 (82)
T 2yvy_A            2 KAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVR   49 (82)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             878789999700999999998501789999987516126899998641


No 6  
>>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140)
Probab=97.44  E-value=0.00017  Score=47.30  Aligned_cols=60  Identities=10%  Similarity=0.265  Sum_probs=52.3

Q ss_pred             HHHHHHHHHCCHHHH--HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             999999951998999--999963798999999972998999999962999999999999952
Q gi|254780375|r  105 KNILDIYKKMDSDSA--ALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVAN  164 (175)
Q Consensus       105 ~~lv~iy~~M~p~~A--A~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~  164 (175)
                      ...++|++.|+|+..  +.+++.|+.+.++.++..|+++.++.||..|+++...++...|..
T Consensus         3 e~~aeil~~L~~~~q~~~~ii~~l~~~~~~~il~~l~~Dd~adll~~lp~~~~~~il~~l~~   64 (82)
T 2oux_A            3 KELADXFDVIEEDNENXKDYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSS   64 (82)
T ss_dssp             HHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88789998733437999999996899999999986570466677886208888899873014


No 7  
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65)
Probab=96.96  E-value=0.0017  Score=41.06  Aligned_cols=61  Identities=15%  Similarity=0.190  Sum_probs=55.2

Q ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             9999951998999999963798999999972998999999962999999999999952711
Q gi|254780375|r  107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLK  167 (175)
Q Consensus       107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~  167 (175)
                      .-+....|+|+.-+.+|..=.+.+.|-||+.|+|+++++||..++++...++..-++++.+
T Consensus         4 ~~~~L~~~~~~~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ria~l~~   64 (65)
T 1lkv_X            4 PFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLER   64 (65)
T ss_dssp             --------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf             4899873999999999982899999999971998999999997999999999998531234


No 8  
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65)
Probab=94.85  E-value=0.066  Score=31.03  Aligned_cols=48  Identities=15%  Similarity=0.334  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf             999999999519989999999637989999999729989999999629
Q gi|254780375|r  103 YNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKM  150 (175)
Q Consensus       103 ~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M  150 (175)
                      .-+.++.+..+=.|.-.|-+|+.|+++.|+.||..++++...+|+..|
T Consensus        12 ~~~~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ri   59 (65)
T 1lkv_X           12 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRI   59 (65)
T ss_dssp             CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             999999999828999999999719989999999979999999999985


No 9  
>>1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} (A:)
Probab=87.45  E-value=1.8  Score=21.90  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=36.2

Q ss_pred             HHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH
Q ss_conf             51998999999963798999999972998999999962999999999999952711214
Q gi|254780375|r  112 KKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK  170 (175)
Q Consensus       112 ~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~  170 (175)
                      -.+++..--.+|.+++.+..+--|..-++.....||+.|++-.+..+..-|..+.+.+.
T Consensus         8 ~~l~~~~l~~ll~~i~~~~la~ALkga~~~~~~~il~nms~R~~~~l~~el~~~g~V~~   66 (101)
T 1qc7_A            8 LKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRL   66 (101)
T ss_dssp             GGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCCH
T ss_pred             HCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
T ss_conf             54898899999996899899999868999999999986689999999999986399889


No 10 
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:138-232)
Probab=86.79  E-value=2  Score=21.67  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=44.7

Q ss_pred             HCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH
Q ss_conf             1998999999963798999999972998999999962999999999999952711214
Q gi|254780375|r  113 KMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK  170 (175)
Q Consensus       113 ~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~  170 (175)
                      .+++..--.+|.+.+.+..+--|..-++.....||+.|++-.+..+..-+..+.+.+.
T Consensus         3 ~l~~~~l~~il~~v~~~~la~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~g~v~~   60 (95)
T 1lkv_X            3 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRL   60 (95)
T ss_dssp             GSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCH
T ss_pred             HCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
T ss_conf             6044217677775065442023699999999999996999999999987562599709


No 11 
>>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:93-137)
Probab=86.12  E-value=1.4  Score=22.59  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=23.5

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHC---CHHHHHHHHHHH
Q ss_conf             9999999729989999999629---999999999999
Q gi|254780375|r  129 DISSHILMRLSPRQSSLIMSKM---NPKSATMITNVV  162 (175)
Q Consensus       129 d~aa~iL~~m~~~~~a~IL~~M---~p~~Aa~it~~l  162 (175)
                      ..+|+||..|+...-..||+.+   ||+-|.+|..+|
T Consensus         4 ~~~AeIlN~~d~~~e~~il~~i~~~d~eLae~Ir~~M   40 (45)
T 1lkv_X            4 DTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRM   40 (45)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             9999999854511577888877403778777687612


No 12 
>>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:)
Probab=66.90  E-value=7.9  Score=17.89  Aligned_cols=43  Identities=5%  Similarity=-0.205  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999519989999999637
Q gi|254780375|r   84 NHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQI  126 (175)
Q Consensus        84 ~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m  126 (175)
                      +.+..++.......+......+...++|.-++|++-+.....+
T Consensus       114 ~i~~~~~~~~~~~~e~~~~~~~~~~~i~~iLtpEQr~kl~~~~  156 (175)
T 3lay_A          114 KINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPRGAGMGYGGC  156 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999999999999999999999999999834832124465667


No 13 
>>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491)
Probab=64.52  E-value=8.8  Score=17.60  Aligned_cols=26  Identities=8%  Similarity=0.069  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999
Q gi|254780375|r   69 EDLQKDIEQRVILLENHKKEYNLWFQ   94 (175)
Q Consensus        69 ~~le~~l~~r~~eLe~~~~ei~~~l~   94 (175)
                      +.|++.+++..++|.+++++++..+.
T Consensus         3 ~~lk~~~~~~~e~~~~~~~~~~~~~~   28 (373)
T 1m1j_A            3 VTLKQRVATQVNRIKALQNSIQEQVV   28 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999


No 14 
>>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} (A:103-390)
Probab=60.90  E-value=10  Score=17.19  Aligned_cols=43  Identities=19%  Similarity=0.152  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999
Q gi|254780375|r   59 RDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIM  101 (175)
Q Consensus        59 ~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~  101 (175)
                      .++......+++++.+++....+..++.++++...+..++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~   46 (288)
T 1deq_A            4 NNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLV   46 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999


No 15 
>>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657)
Probab=60.65  E-value=10  Score=17.17  Aligned_cols=34  Identities=12%  Similarity=0.293  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999-999999999999999999
Q gi|254780375|r   64 QKKVLEDLQKDIEQRV-ILLENHKKEYNLWFQKYD   97 (175)
Q Consensus        64 ~e~eL~~le~~l~~r~-~eLe~~~~ei~~~l~~~~   97 (175)
                      -+..+...+.++.+++ .+++.++.+++.++++++
T Consensus       263 v~e~fd~~e~~v~e~l~ddI~s~~~el~~l~~qK~  297 (300)
T 2j69_A          263 VKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQ  297 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999


No 16 
>>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} (A:17-136,A:217-337)
Probab=54.96  E-value=10  Score=17.20  Aligned_cols=38  Identities=8%  Similarity=0.137  Sum_probs=27.6

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHH
Q ss_conf             99999995199899999996379899999997299899
Q gi|254780375|r  105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQ  142 (175)
Q Consensus       105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~  142 (175)
                      +.++++...|.|.+.+++++.|+.-+..--+.+|.+|+
T Consensus        83 ~eiv~i~~~~TPAK~~eVv~~lnvvEmmma~qKMRaRr  120 (241)
T 1eex_A           83 SEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARR  120 (241)
T ss_dssp             HHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHHHHCSBS
T ss_pred             HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf             99999860688799999997368999999999740548


No 17 
>>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} (A:57-148)
Probab=52.93  E-value=14  Score=16.36  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999997667999999999999999999999999999999999999999999999999
Q gi|254780375|r   43 REIQQYCTNVIDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMS  102 (175)
Q Consensus        43 ~ei~~~~~~~~~~~re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~  102 (175)
                      .++.+|......  -+........-+..-.+++++++.+|+..+..+...+...+.....
T Consensus        21 ~eIk~~l~l~~~--~~~~~~~~~~ll~~~~~~i~~ki~eL~~~~~~L~~~~~~~~~~~~~   78 (92)
T 3gpv_A           21 QKIKQFIDWSXE--GDSTILHRLKLXKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS   78 (92)
T ss_dssp             HHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999866--7678999999999999999999999999999999999999998706


No 18 
>>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} (A:)
Probab=31.97  E-value=29  Score=14.29  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999
Q gi|254780375|r   59 RDYLSQKKVLEDLQKDIEQRVILLENHKKEYNL   91 (175)
Q Consensus        59 ~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~   91 (175)
                      .++..+-++|+...+++++|+..|+.-..-+..
T Consensus         6 ~~LE~r~k~Le~knseLEerisTLqnEN~MLRq   38 (42)
T 2oqq_A            6 SELENRVKDLENKNSELEERLSTLQNENQMLRH   38 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             689999999998669999999999825899999


No 19 
>>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} (A:)
Probab=29.54  E-value=32  Score=14.04  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99997667999999999999999999999999999999999999999999999999999999999519
Q gi|254780375|r   47 QYCTNVIDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKM  114 (175)
Q Consensus        47 ~~~~~~~~~~re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~M  114 (175)
                      +|-..+++ .|..-+..--++=..|..+|+++..++..++.+...+..-.+     ....++++++.|
T Consensus        20 ~YWk~lAE-~Rr~AL~eaL~EN~~Lh~~ie~l~eEi~~L~~en~~L~Ev~~-----~~~~~a~v~~~l   81 (83)
T 1wlq_A           20 QYWKEVAE-QRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE-----HVQYXAEVIERL   81 (83)
T ss_dssp             THHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-----HHHHHHHHHHHT
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf             79999999-999999999999999999999888999999999999999999-----999999999987


No 20 
>>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} (A:)
Probab=28.10  E-value=34  Score=13.88  Aligned_cols=43  Identities=9%  Similarity=0.098  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999
Q gi|254780375|r   57 RERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSF   99 (175)
Q Consensus        57 re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~   99 (175)
                      -+.+++-++..++.|...|-++..++..++..+..+.++..+.
T Consensus        19 LE~~lAfqe~tie~Ln~vv~~Qq~~I~~L~~ql~~L~~rl~~~   61 (78)
T 3efg_A           19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV   61 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999974


No 21 
>>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} (A:)
Probab=27.55  E-value=35  Score=13.82  Aligned_cols=22  Identities=18%  Similarity=0.370  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254780375|r   68 LEDLQKDIEQRVILLENHKKEY   89 (175)
Q Consensus        68 L~~le~~l~~r~~eLe~~~~ei   89 (175)
                      ++..=.+|++++++|++++..+
T Consensus         6 IEQKIedId~qIaeLe~KR~~L   27 (33)
T 1r48_A            6 IEQKIDDIDHEIADLQAKRTRL   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998987999999999999999


No 22 
>>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A (A:642-758)
Probab=27.32  E-value=29  Score=14.32  Aligned_cols=51  Identities=10%  Similarity=0.139  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf             9999999999999--99999999999999999999999999519989999999637
Q gi|254780375|r   73 KDIEQRVILLENH--KKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQI  126 (175)
Q Consensus        73 ~~l~~r~~eLe~~--~~ei~~~l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m  126 (175)
                      ..+.+++.+|..-  ..++..++...   .....+++..+.+.|+|..-+.++..|
T Consensus        64 ~~i~~~i~~Lk~e~v~~~i~~l~~~d---~e~~~~gl~~~l~~l~~~er~~~~~~L  116 (117)
T 3k8x_A           64 KTLDDKLKGLKLESFAQDLAKKIRSD---HDNAIDGLSEVIKMLSTDDKEKLLKTL  116 (117)
T ss_dssp             HHHHHHHHHHHTTCCC----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             88999999997899999999998658---787999999998629999999999962


No 23 
>>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} (A:61-142)
Probab=25.11  E-value=39  Score=13.54  Aligned_cols=55  Identities=9%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999999951
Q gi|254780375|r   59 RDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK  113 (175)
Q Consensus        59 ~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~  113 (175)
                      ..+..|.+-|..-...+.+++++|+....-++.-+.-+++........+-.....
T Consensus        17 ~T~~eR~~lL~~h~~~l~~qi~el~~~l~~l~~Ki~~Y~~~~~~~~~~~~~~~~~   71 (82)
T 3gp4_A           17 HTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE   71 (82)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHH
T ss_conf             5799999999999999999999999999999999986654324289998713800


No 24 
>>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} (A:1-81)
Probab=25.04  E-value=39  Score=13.53  Aligned_cols=48  Identities=13%  Similarity=0.407  Sum_probs=26.8

Q ss_pred             HHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999841302210146677857689999999766799999999999999
Q gi|254780375|r   21 FLLFFFLQGFANQSYGDPTLVDREIQQYCTNVIDSVRERDYLSQKKVL   68 (175)
Q Consensus        21 ~~l~~~~~~~a~~~~~~~~~~~~ei~~~~~~~~~~~re~~l~~~e~eL   68 (175)
                      ++.+..+.|......+..+..++.++.||...-|=..+-.+.-.++.+
T Consensus        30 lV~Yc~L~gl~p~~~~~~~l~~~~l~~FCq~LVDYvSaGHFeIYe~l~   77 (81)
T 2p7v_A           30 LVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERIL   77 (81)
T ss_dssp             HHHHHHHHSCCCC-------CCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             999998817998763334687899999999999998043278999999


No 25 
>>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidases, MCSG, PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis MC58} (A:795-867)
Probab=24.96  E-value=32  Score=14.11  Aligned_cols=18  Identities=22%  Similarity=0.270  Sum_probs=6.0

Q ss_pred             CCHHHHHHHHHHHHCCCC
Q ss_conf             999999999999952711
Q gi|254780375|r  150 MNPKSATMITNVVANMLK  167 (175)
Q Consensus       150 M~p~~Aa~it~~la~~~~  167 (175)
                      .+|+-|+++...+..-++
T Consensus        21 ~NPqvAARl~~~f~~w~~   38 (73)
T 2gtq_A           21 FNPQVAARLVQAFNLCNK   38 (73)
T ss_dssp             TCHHHHHHHGGGGTTGGG
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             588999999999888986


No 26 
>>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-BOX; WD40 domains, double phosphorylation, transcription/cell cycle complex; HET: TPO; 2.50A {Homo sapiens} (B:1-55)
Probab=23.86  E-value=16  Score=16.04  Aligned_cols=36  Identities=8%  Similarity=0.147  Sum_probs=21.7

Q ss_pred             HHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
Q ss_conf             995199899999996379899999997299899999
Q gi|254780375|r  110 IYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSL  145 (175)
Q Consensus       110 iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~  145 (175)
                      +...++|...-..++.|+++....|++.++++....
T Consensus         6 ~~~~~~~~~~~d~~~~LP~Ei~~~Ifs~L~~~~L~~   41 (55)
T 2ovr_B            6 MMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQ   41 (55)
T ss_dssp             HHHHHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHCHHHHCCCHHHCCHHHHHHHHHCCCHHHHHH
T ss_conf             998729555278813399899999875599999999


No 27 
>>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (I:)
Probab=22.92  E-value=43  Score=13.28  Aligned_cols=20  Identities=20%  Similarity=0.645  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3788999998999999999999841
Q gi|254780375|r    2 ILLPIIYYYKKRDMLSQLLFLLFFF   26 (175)
Q Consensus         2 i~ip~if~~~~~~~l~~~~~~l~~~   26 (175)
                      |+||++.     =+++++.+.+.|.
T Consensus        13 ilipvv~-----wl~p~vvmgllfi   32 (38)
T 1jb0_I           13 IFIPVVC-----WLMPTVVMGLLFL   32 (38)
T ss_dssp             HHHHHHH-----THHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHHHHHH
T ss_conf             9999999-----9889999998872


No 28 
>>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A (A:52-154)
Probab=22.45  E-value=44  Score=13.22  Aligned_cols=30  Identities=13%  Similarity=0.279  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999
Q gi|254780375|r   65 KKVLEDLQKDIEQRVILLENHKKEYNLWFQ   94 (175)
Q Consensus        65 e~eL~~le~~l~~r~~eLe~~~~ei~~~l~   94 (175)
                      ...+...-.+|++++++|...+..+..++.
T Consensus        41 ~~ll~~kl~ei~~ki~eL~~l~~~L~~~~~   70 (103)
T 2zhg_A           41 KQLSSQWREELDRRIHTLVALRDELDGCIG   70 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999852999999974


No 29 
>>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} (A:)
Probab=21.79  E-value=38  Score=13.59  Aligned_cols=31  Identities=6%  Similarity=0.085  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             8999999963798999999972998999999
Q gi|254780375|r  116 SDSAALQLEQIDPDISSHILMRLSPRQSSLI  146 (175)
Q Consensus       116 p~~AA~il~~m~~d~aa~iL~~m~~~~~a~I  146 (175)
                      |.....-+..|+.|....|+..++++.....
T Consensus         2 ~~~~~~~~~~LP~eil~~Il~~L~~~dl~r~   32 (53)
T 1fs1_A            2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKV   32 (53)
T ss_dssp             -------CCSSCHHHHHHHHTTSCGGGHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9898877443739999999999724999988


Done!