Query gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 175 No_of_seqs 153 out of 463 Neff 5.9 Searched_HMMs 33803 Date Wed Jun 1 12:26:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780375.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2oux_A Magnesium transporter; 98.2 7.3E-06 2.2E-10 56.0 7.5 56 108-163 20-75 (82) 2 >2yvy_A MGTE, Mg2+ transporter 98.0 2.8E-05 8.3E-10 52.3 7.1 59 105-163 15-76 (82) 3 >2zy9_A Mg2+ transporter MGTE; 97.9 8.3E-05 2.5E-09 49.3 8.1 62 104-165 65-126 (158) 4 >2zy9_A Mg2+ transporter MGTE; 97.5 0.00027 7.8E-09 46.2 6.7 52 107-158 56-107 (158) 5 >2yvy_A MGTE, Mg2+ transporter 97.5 0.00039 1.2E-08 45.1 7.4 48 116-163 2-49 (82) 6 >2oux_A Magnesium transporter; 97.4 0.00017 5.2E-09 47.3 4.6 60 105-164 3-64 (82) 7 >1lkv_X Flagellar motor switch 97.0 0.0017 5E-08 41.1 5.6 61 107-167 4-64 (65) 8 >1lkv_X Flagellar motor switch 94.8 0.066 1.9E-06 31.0 5.5 48 103-150 12-59 (65) 9 >1qc7_A Protein (FLIG); flagel 87.5 1.8 5.4E-05 21.9 6.8 59 112-170 8-66 (101) 10 >1lkv_X Flagellar motor switch 86.8 2 5.9E-05 21.7 7.8 58 113-170 3-60 (95) 11 >1lkv_X Flagellar motor switch 86.1 1.4 4.2E-05 22.6 4.8 34 129-162 4-40 (45) 12 >3lay_A Zinc resistance-associ 66.9 7.9 0.00023 17.9 10.2 43 84-126 114-156 (175) 13 >1m1j_A Fibrinogen alpha subun 64.5 8.8 0.00026 17.6 7.1 26 69-94 3-28 (373) 14 >1deq_A Fibrinogen (alpha chai 60.9 10 0.0003 17.2 9.3 43 59-101 4-46 (288) 15 >2j69_A Bacterial dynamin-like 60.7 10 0.00031 17.2 8.2 34 64-97 263-297 (300) 16 >1eex_A Propanediol dehydratas 55.0 10 0.0003 17.2 2.8 38 105-142 83-120 (241) 17 >3gpv_A Transcriptional regula 52.9 14 0.00041 16.4 6.0 58 43-102 21-78 (92) 18 >2oqq_A Transcription factor H 32.0 29 0.00087 14.3 6.0 33 59-91 6-38 (42) 19 >1wlq_A Geminin; coiled-coil; 29.5 32 0.00096 14.0 7.5 62 47-114 20-81 (83) 20 >3efg_A Protein SLYX homolog; 28.1 34 0.001 13.9 5.4 43 57-99 19-61 (78) 21 >1r48_A Proline/betaine transp 27.6 35 0.001 13.8 4.0 22 68-89 6-27 (33) 22 >3k8x_A Acetyl-COA carboxylase 27.3 29 0.00086 14.3 1.5 51 73-126 64-116 (117) 23 >3gp4_A Transcriptional regula 25.1 39 0.0011 13.5 8.0 55 59-113 17-71 (82) 24 >2p7v_A Regulator of sigma D; 25.0 39 0.0012 13.5 2.5 48 21-68 30-77 (81) 25 >2gtq_A Aminopeptidase N; alan 25.0 32 0.00093 14.1 1.3 18 150-167 21-38 (73) 26 >2ovr_B FBW7, F-BOX/WD repeat 23.9 16 0.00046 16.0 -0.5 36 110-145 6-41 (55) 27 >1jb0_I Photosystem 1 reaction 22.9 43 0.0013 13.3 2.5 20 2-26 13-32 (38) 28 >2zhg_A Redox-sensitive transc 22.4 44 0.0013 13.2 4.5 30 65-94 41-70 (103) 29 >1fs1_A SKP2 F-BOX, cyclin A/C 21.8 38 0.0011 13.6 1.2 31 116-146 2-32 (53) No 1 >>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140) Probab=98.18 E-value=7.3e-06 Score=56.02 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=53.4 Q ss_pred HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 99995199899999996379899999997299899999996299999999999995 Q gi|254780375|r 108 LDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 (175) Q Consensus 108 v~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la 163 (175) .+|+++|+++.++.+++.|+.|+++++|..|+++....||..|+++.+..+..+|+ T Consensus 20 ~~ii~~l~~~~~~~il~~l~~Dd~adll~~lp~~~~~~il~~l~~~~r~~i~~ll~ 75 (82) T 2oux_A 20 KDYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSSEEAGEIKELLH 75 (82) T ss_dssp THHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTT T ss_pred HHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999689999999998657046667788620888889987301457899999752 No 2 >>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:56-137) Probab=97.97 E-value=2.8e-05 Score=52.32 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=52.7 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHH---HHHHHHHHCCHHHHHHHHHHHH Q ss_conf 9999999519989999999637989999999729989---9999996299999999999995 Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPR---QSSLIMSKMNPKSATMITNVVA 163 (175) Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~---~~a~IL~~M~p~~Aa~it~~la 163 (175) ..-..+++.|+++.++.+++.|++|+++++|..|+.+ .+..||+.|+++.+.+|..+|+ T Consensus 15 ~~q~~li~~l~~~~~~~il~~m~~DD~~dll~~Lp~~~~~~~~~iL~~l~~e~r~~i~~Ll~ 76 (82) T 2yvy_A 15 EEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALAR 76 (82) T ss_dssp HHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999998501789999987516126899998641244679999971488678999998742 No 3 >>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158) Probab=97.87 E-value=8.3e-05 Score=49.33 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=51.1 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCC Q ss_conf 99999999519989999999637989999999729989999999629999999999999527 Q gi|254780375|r 104 NKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANM 165 (175) Q Consensus 104 ~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~ 165 (175) .+..+.++..|+|+.++.+|++|+++....|+..|+++.++.+++.|+|++++.|...|... T Consensus 65 ~~~~~~il~~l~~~~~~~vl~~l~~~~~~~i~~~l~~~~~~~~l~~l~~dd~a~il~~l~~~ 126 (158) T 2zy9_A 65 GEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKE 126 (158) T ss_dssp HHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHH T ss_conf 99999999959975688999849999999999859999999999839956899998726354 No 4 >>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:1-158) Probab=97.55 E-value=0.00027 Score=46.15 Aligned_cols=52 Identities=15% Similarity=0.336 Sum_probs=17.6 Q ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH Q ss_conf 9999951998999999963798999999972998999999962999999999 Q gi|254780375|r 107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMI 158 (175) Q Consensus 107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~i 158 (175) ++.+++.|+|+.++.++..|+++.+++||..|++.....|+..|+++.++.+ T Consensus 56 iA~~L~~l~~~~~~~il~~l~~~~~~~vl~~l~~~~~~~i~~~l~~~~~~~~ 107 (158) T 2zy9_A 56 LLALWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREI 107 (158) T ss_dssp HHHGGGGSCHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH T ss_conf 9999981999999999995997568899984999999999985999999999 No 5 >>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:56-137) Probab=97.54 E-value=0.00039 Score=45.10 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=26.8 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 899999996379899999997299899999996299999999999995 Q gi|254780375|r 116 SDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 (175) Q Consensus 116 p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la 163 (175) |+.+|.+|++|+++....++..|+.++.+.|++.|+|+.++.+.+.|- T Consensus 2 ~e~~aev~~el~~~~q~~li~~l~~~~~~~il~~m~~DD~~dll~~Lp 49 (82) T 2yvy_A 2 KAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVR 49 (82) T ss_dssp HHHHHHHHHTSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCC T ss_conf 878789999700999999998501789999987516126899998641 No 6 >>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:59-140) Probab=97.44 E-value=0.00017 Score=47.30 Aligned_cols=60 Identities=10% Similarity=0.265 Sum_probs=52.3 Q ss_pred HHHHHHHHHCCHHHH--HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHC Q ss_conf 999999951998999--999963798999999972998999999962999999999999952 Q gi|254780375|r 105 KNILDIYKKMDSDSA--ALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVAN 164 (175) Q Consensus 105 ~~lv~iy~~M~p~~A--A~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~ 164 (175) ...++|++.|+|+.. +.+++.|+.+.++.++..|+++.++.||..|+++...++...|.. T Consensus 3 e~~aeil~~L~~~~q~~~~ii~~l~~~~~~~il~~l~~Dd~adll~~lp~~~~~~il~~l~~ 64 (82) T 2oux_A 3 KELADXFDVIEEDNENXKDYLAEXRPSYAADXLAEXYTDNAVDLLNXLDKSQKAKYLSLLSS 64 (82) T ss_dssp HHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88789998733437999999996899999999986570466677886208888899873014 No 7 >>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65) Probab=96.96 E-value=0.0017 Score=41.06 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=55.2 Q ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC Q ss_conf 9999951998999999963798999999972998999999962999999999999952711 Q gi|254780375|r 107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLK 167 (175) Q Consensus 107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~ 167 (175) .-+....|+|+.-+.+|..=.+.+.|-||+.|+|+++++||..++++...++..-++++.+ T Consensus 4 ~~~~L~~~~~~~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ria~l~~ 64 (65) T 1lkv_X 4 PFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLER 64 (65) T ss_dssp --------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCC T ss_conf 4899873999999999982899999999971998999999997999999999998531234 No 8 >>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65) Probab=94.85 E-value=0.066 Score=31.03 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=35.9 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC Q ss_conf 999999999519989999999637989999999729989999999629 Q gi|254780375|r 103 YNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKM 150 (175) Q Consensus 103 ~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M 150 (175) .-+.++.+..+=.|.-.|-+|+.|+++.|+.||..++++...+|+..| T Consensus 12 ~~~~l~~~l~~EhPQ~iAliLs~L~p~~AA~VL~~lp~~~r~dv~~Ri 59 (65) T 1lkv_X 12 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRI 59 (65) T ss_dssp CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 999999999828999999999719989999999979999999999985 No 9 >>1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} (A:) Probab=87.45 E-value=1.8 Score=21.90 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=36.2 Q ss_pred HHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH Q ss_conf 51998999999963798999999972998999999962999999999999952711214 Q gi|254780375|r 112 KKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK 170 (175) Q Consensus 112 ~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~ 170 (175) -.+++..--.+|.+++.+..+--|..-++.....||+.|++-.+..+..-|..+.+.+. T Consensus 8 ~~l~~~~l~~ll~~i~~~~la~ALkga~~~~~~~il~nms~R~~~~l~~el~~~g~V~~ 66 (101) T 1qc7_A 8 LKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRL 66 (101) T ss_dssp GGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCCH T ss_pred HCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH T ss_conf 54898899999996899899999868999999999986689999999999986399889 No 10 >>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:138-232) Probab=86.79 E-value=2 Score=21.67 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=44.7 Q ss_pred HCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH Q ss_conf 1998999999963798999999972998999999962999999999999952711214 Q gi|254780375|r 113 KMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK 170 (175) Q Consensus 113 ~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~ 170 (175) .+++..--.+|.+.+.+..+--|..-++.....||+.|++-.+..+..-+..+.+.+. T Consensus 3 ~l~~~~l~~il~~v~~~~la~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~g~v~~ 60 (95) T 1lkv_X 3 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRL 60 (95) T ss_dssp GSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCH T ss_pred HCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH T ss_conf 6044217677775065442023699999999999996999999999987562599709 No 11 >>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:93-137) Probab=86.12 E-value=1.4 Score=22.59 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=23.5 Q ss_pred HHHHHHHHHCCHHHHHHHHHHC---CHHHHHHHHHHH Q ss_conf 9999999729989999999629---999999999999 Q gi|254780375|r 129 DISSHILMRLSPRQSSLIMSKM---NPKSATMITNVV 162 (175) Q Consensus 129 d~aa~iL~~m~~~~~a~IL~~M---~p~~Aa~it~~l 162 (175) ..+|+||..|+...-..||+.+ ||+-|.+|..+| T Consensus 4 ~~~AeIlN~~d~~~e~~il~~i~~~d~eLae~Ir~~M 40 (45) T 1lkv_X 4 DTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRM 40 (45) T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 9999999854511577888877403778777687612 No 12 >>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:) Probab=66.90 E-value=7.9 Score=17.89 Aligned_cols=43 Identities=5% Similarity=-0.205 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC Q ss_conf 9999999999999999999999999999519989999999637 Q gi|254780375|r 84 NHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQI 126 (175) Q Consensus 84 ~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m 126 (175) +.+..++.......+......+...++|.-++|++-+.....+ T Consensus 114 ~i~~~~~~~~~~~~e~~~~~~~~~~~i~~iLtpEQr~kl~~~~ 156 (175) T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPRGAGMGYGGC 156 (175) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 9999999999999999999999999999834832124465667 No 13 >>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491) Probab=64.52 E-value=8.8 Score=17.60 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999 Q gi|254780375|r 69 EDLQKDIEQRVILLENHKKEYNLWFQ 94 (175) Q Consensus 69 ~~le~~l~~r~~eLe~~~~ei~~~l~ 94 (175) +.|++.+++..++|.+++++++..+. T Consensus 3 ~~lk~~~~~~~e~~~~~~~~~~~~~~ 28 (373) T 1m1j_A 3 VTLKQRVATQVNRIKALQNSIQEQVV 28 (373) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999 No 14 >>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} (A:103-390) Probab=60.90 E-value=10 Score=17.19 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999 Q gi|254780375|r 59 RDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIM 101 (175) Q Consensus 59 ~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~ 101 (175) .++......+++++.+++....+..++.++++...+..++... T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 46 (288) T 1deq_A 4 NNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLV 46 (288) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999999 No 15 >>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657) Probab=60.65 E-value=10 Score=17.17 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999-999999999999999999 Q gi|254780375|r 64 QKKVLEDLQKDIEQRV-ILLENHKKEYNLWFQKYD 97 (175) Q Consensus 64 ~e~eL~~le~~l~~r~-~eLe~~~~ei~~~l~~~~ 97 (175) -+..+...+.++.+++ .+++.++.+++.++++++ T Consensus 263 v~e~fd~~e~~v~e~l~ddI~s~~~el~~l~~qK~ 297 (300) T 2j69_A 263 VKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQ 297 (300) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999 No 16 >>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} (A:17-136,A:217-337) Probab=54.96 E-value=10 Score=17.20 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=27.6 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHH Q ss_conf 99999995199899999996379899999997299899 Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQ 142 (175) Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~ 142 (175) +.++++...|.|.+.+++++.|+.-+..--+.+|.+|+ T Consensus 83 ~eiv~i~~~~TPAK~~eVv~~lnvvEmmma~qKMRaRr 120 (241) T 1eex_A 83 SEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARR 120 (241) T ss_dssp HHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHHHHCSBS T ss_pred HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCC T ss_conf 99999860688799999997368999999999740548 No 17 >>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} (A:57-148) Probab=52.93 E-value=14 Score=16.36 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999997667999999999999999999999999999999999999999999999999 Q gi|254780375|r 43 REIQQYCTNVIDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMS 102 (175) Q Consensus 43 ~ei~~~~~~~~~~~re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~ 102 (175) .++.+|...... -+........-+..-.+++++++.+|+..+..+...+...+..... T Consensus 21 ~eIk~~l~l~~~--~~~~~~~~~~ll~~~~~~i~~ki~eL~~~~~~L~~~~~~~~~~~~~ 78 (92) T 3gpv_A 21 QKIKQFIDWSXE--GDSTILHRLKLXKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 78 (92) T ss_dssp HHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------ T ss_pred HHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999866--7678999999999999999999999999999999999999998706 No 18 >>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} (A:) Probab=31.97 E-value=29 Score=14.29 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999 Q gi|254780375|r 59 RDYLSQKKVLEDLQKDIEQRVILLENHKKEYNL 91 (175) Q Consensus 59 ~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~ 91 (175) .++..+-++|+...+++++|+..|+.-..-+.. T Consensus 6 ~~LE~r~k~Le~knseLEerisTLqnEN~MLRq 38 (42) T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 689999999998669999999999825899999 No 19 >>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} (A:) Probab=29.54 E-value=32 Score=14.04 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99997667999999999999999999999999999999999999999999999999999999999519 Q gi|254780375|r 47 QYCTNVIDSVRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKM 114 (175) Q Consensus 47 ~~~~~~~~~~re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~M 114 (175) +|-..+++ .|..-+..--++=..|..+|+++..++..++.+...+..-.+ ....++++++.| T Consensus 20 ~YWk~lAE-~Rr~AL~eaL~EN~~Lh~~ie~l~eEi~~L~~en~~L~Ev~~-----~~~~~a~v~~~l 81 (83) T 1wlq_A 20 QYWKEVAE-QRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE-----HVQYXAEVIERL 81 (83) T ss_dssp THHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-----HHHHHHHHHHHT T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH T ss_conf 79999999-999999999999999999999888999999999999999999-----999999999987 No 20 >>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} (A:) Probab=28.10 E-value=34 Score=13.88 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999 Q gi|254780375|r 57 RERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSF 99 (175) Q Consensus 57 re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~ 99 (175) -+.+++-++..++.|...|-++..++..++..+..+.++..+. T Consensus 19 LE~~lAfqe~tie~Ln~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 61 (78) T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999999999974 No 21 >>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} (A:) Probab=27.55 E-value=35 Score=13.82 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254780375|r 68 LEDLQKDIEQRVILLENHKKEY 89 (175) Q Consensus 68 L~~le~~l~~r~~eLe~~~~ei 89 (175) ++..=.+|++++++|++++..+ T Consensus 6 IEQKIedId~qIaeLe~KR~~L 27 (33) T 1r48_A 6 IEQKIDDIDHEIADLQAKRTRL 27 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998987999999999999999 No 22 >>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A (A:642-758) Probab=27.32 E-value=29 Score=14.32 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC Q ss_conf 9999999999999--99999999999999999999999999519989999999637 Q gi|254780375|r 73 KDIEQRVILLENH--KKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQI 126 (175) Q Consensus 73 ~~l~~r~~eLe~~--~~ei~~~l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m 126 (175) ..+.+++.+|..- ..++..++... .....+++..+.+.|+|..-+.++..| T Consensus 64 ~~i~~~i~~Lk~e~v~~~i~~l~~~d---~e~~~~gl~~~l~~l~~~er~~~~~~L 116 (117) T 3k8x_A 64 KTLDDKLKGLKLESFAQDLAKKIRSD---HDNAIDGLSEVIKMLSTDDKEKLLKTL 116 (117) T ss_dssp HHHHHHHHHHHTTCCC---------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 88999999997899999999998658---787999999998629999999999962 No 23 >>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} (A:61-142) Probab=25.11 E-value=39 Score=13.54 Aligned_cols=55 Identities=9% Similarity=0.312 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999999951 Q gi|254780375|r 59 RDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK 113 (175) Q Consensus 59 ~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~ 113 (175) ..+..|.+-|..-...+.+++++|+....-++.-+.-+++........+-..... T Consensus 17 ~T~~eR~~lL~~h~~~l~~qi~el~~~l~~l~~Ki~~Y~~~~~~~~~~~~~~~~~ 71 (82) T 3gp4_A 17 HTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE 71 (82) T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHH T ss_conf 5799999999999999999999999999999999986654324289998713800 No 24 >>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} (A:1-81) Probab=25.04 E-value=39 Score=13.53 Aligned_cols=48 Identities=13% Similarity=0.407 Sum_probs=26.8 Q ss_pred HHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999841302210146677857689999999766799999999999999 Q gi|254780375|r 21 FLLFFFLQGFANQSYGDPTLVDREIQQYCTNVIDSVRERDYLSQKKVL 68 (175) Q Consensus 21 ~~l~~~~~~~a~~~~~~~~~~~~ei~~~~~~~~~~~re~~l~~~e~eL 68 (175) ++.+..+.|......+..+..++.++.||...-|=..+-.+.-.++.+ T Consensus 30 lV~Yc~L~gl~p~~~~~~~l~~~~l~~FCq~LVDYvSaGHFeIYe~l~ 77 (81) T 2p7v_A 30 LVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERIL 77 (81) T ss_dssp HHHHHHHHSCCCC-------CCHHHHHHHHHHHHHHHHHHHTHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 999998817998763334687899999999999998043278999999 No 25 >>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidases, MCSG, PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis MC58} (A:795-867) Probab=24.96 E-value=32 Score=14.11 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=6.0 Q ss_pred CCHHHHHHHHHHHHCCCC Q ss_conf 999999999999952711 Q gi|254780375|r 150 MNPKSATMITNVVANMLK 167 (175) Q Consensus 150 M~p~~Aa~it~~la~~~~ 167 (175) .+|+-|+++...+..-++ T Consensus 21 ~NPqvAARl~~~f~~w~~ 38 (73) T 2gtq_A 21 FNPQVAARLVQAFNLCNK 38 (73) T ss_dssp TCHHHHHHHGGGGTTGGG T ss_pred CCHHHHHHHHHHHHHHHH T ss_conf 588999999999888986 No 26 >>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-BOX; WD40 domains, double phosphorylation, transcription/cell cycle complex; HET: TPO; 2.50A {Homo sapiens} (B:1-55) Probab=23.86 E-value=16 Score=16.04 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=21.7 Q ss_pred HHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH Q ss_conf 995199899999996379899999997299899999 Q gi|254780375|r 110 IYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSL 145 (175) Q Consensus 110 iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~ 145 (175) +...++|...-..++.|+++....|++.++++.... T Consensus 6 ~~~~~~~~~~~d~~~~LP~Ei~~~Ifs~L~~~~L~~ 41 (55) T 2ovr_B 6 MMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQ 41 (55) T ss_dssp HHHHHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHH T ss_pred HHHHHCHHHHCCCHHHCCHHHHHHHHHCCCHHHHHH T ss_conf 998729555278813399899999875599999999 No 27 >>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (I:) Probab=22.92 E-value=43 Score=13.28 Aligned_cols=20 Identities=20% Similarity=0.645 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3788999998999999999999841 Q gi|254780375|r 2 ILLPIIYYYKKRDMLSQLLFLLFFF 26 (175) Q Consensus 2 i~ip~if~~~~~~~l~~~~~~l~~~ 26 (175) |+||++. =+++++.+.+.|. T Consensus 13 ilipvv~-----wl~p~vvmgllfi 32 (38) T 1jb0_I 13 IFIPVVC-----WLMPTVVMGLLFL 32 (38) T ss_dssp HHHHHHH-----THHHHHHHHHHHH T ss_pred HHHHHHH-----HHHHHHHHHHHHH T ss_conf 9999999-----9889999998872 No 28 >>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A (A:52-154) Probab=22.45 E-value=44 Score=13.22 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999 Q gi|254780375|r 65 KKVLEDLQKDIEQRVILLENHKKEYNLWFQ 94 (175) Q Consensus 65 e~eL~~le~~l~~r~~eLe~~~~ei~~~l~ 94 (175) ...+...-.+|++++++|...+..+..++. T Consensus 41 ~~ll~~kl~ei~~ki~eL~~l~~~L~~~~~ 70 (103) T 2zhg_A 41 KQLSSQWREELDRRIHTLVALRDELDGCIG 70 (103) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999852999999974 No 29 >>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} (A:) Probab=21.79 E-value=38 Score=13.59 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=19.0 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHH Q ss_conf 8999999963798999999972998999999 Q gi|254780375|r 116 SDSAALQLEQIDPDISSHILMRLSPRQSSLI 146 (175) Q Consensus 116 p~~AA~il~~m~~d~aa~iL~~m~~~~~a~I 146 (175) |.....-+..|+.|....|+..++++..... T Consensus 2 ~~~~~~~~~~LP~eil~~Il~~L~~~dl~r~ 32 (53) T 1fs1_A 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKV 32 (53) T ss_dssp -------CCSSCHHHHHHHHTTSCGGGHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9898877443739999999999724999988 Done!