Query         gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 175
No_of_seqs    153 out of 463
Neff          5.9 
Searched_HMMs 23785
Date          Mon May 30 10:07:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780375.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2oux_A Magnesium transporter;   97.9 3.2E-05 1.3E-09   51.0   7.5   57  107-163    77-133 (286)
  2 2zy9_A Mg2+ transporter MGTE;   97.8 9.4E-05   4E-09   48.0   8.1   57  107-163    92-151 (473)
  3 2yvy_A MGTE, Mg2+ transporter   97.8 0.00014 5.7E-09   47.0   8.9   59  105-163    46-104 (278)
  4 2zy9_A Mg2+ transporter MGTE;   97.7 0.00011 4.5E-09   47.7   6.9   60  105-164    66-125 (473)
  5 1lkv_X Flagellar motor switch   97.5 0.00015 6.2E-09   46.8   5.4   54  113-166   140-193 (232)
  6 3hjl_A Flagellar motor switch   97.4  0.0021 8.6E-08   39.6  10.3   68  103-170   105-172 (329)
  7 2yvy_A MGTE, Mg2+ transporter   97.3 0.00079 3.3E-08   42.2   7.8   60  105-164    70-132 (278)
  8 1lkv_X Flagellar motor switch   97.2 0.00041 1.7E-08   44.0   5.4   57  109-165     6-62  (232)
  9 2oux_A Magnesium transporter;   97.0   0.001 4.3E-08   41.5   5.3   57  106-162    50-108 (286)
 10 3kxr_A Magnesium transporter,   96.9 0.00039 1.7E-08   44.1   2.9   50  114-163     1-50  (205)
 11 3hjl_A Flagellar motor switch   95.3    0.09 3.8E-06   29.2   7.9   65  101-165   115-185 (329)
 12 3kxr_A Magnesium transporter,   91.3   0.079 3.3E-06   29.6   2.1   44  105-148     4-47  (205)
 13 1qc7_A Protein (FLIG); flagell  85.6     1.6 6.8E-05   21.3   6.8   57  113-169     9-65  (101)
 14 2f9i_A Acetyl-coenzyme A carbo  56.4     7.6 0.00032   17.0   3.1   62   75-136    24-86  (327)
 15 1eex_A Propanediol dehydratase  47.4      11 0.00047   16.0   2.8   38  105-142    99-136 (554)
 16 1ufm_A COP9 complex subunit 4;  35.2      18 0.00074   14.7   2.2   40   98-138    15-54  (84)
 17 3nmd_A CGMP dependent protein   33.0      20 0.00084   14.4   6.9   36   56-91     30-65  (72)
 18 2oqq_A Transcription factor HY  30.3      22 0.00093   14.1   6.0   31   60-90      7-37  (42)
 19 3gp4_A Transcriptional regulat  28.4      24   0.001   13.9   9.3   49   62-110    80-128 (142)
 20 2aze_A Transcription factor DP  28.2      24   0.001   13.9   6.2   33   66-98      5-37  (155)
 21 3efg_A Protein SLYX homolog; x  27.1      25  0.0011   13.8   5.4   42   57-98     19-60  (78)
 22 1r48_A Proline/betaine transpo  26.6      26  0.0011   13.7   4.0   22   68-89      6-27  (33)
 23 3hht_A NitrIle hydratase alpha  24.9      28  0.0012   13.5   5.3   58   79-136    22-82  (216)
 24 2r9i_A Putative phage capsid p  24.6      28  0.0012   13.5   4.3   38   89-126     6-43  (141)
 25 1jb0_I Photosystem 1 reaction   23.0      30  0.0013   13.3   2.5   20    2-26     13-32  (38)
 26 1ugp_A NitrIle hydratase alpha  23.0      30  0.0013   13.3   6.1   57   80-136    14-73  (203)
 27 1q08_A Zn(II)-responsive regul  22.5      31  0.0013   13.2   5.3   30   66-95     42-71  (99)

No 1  
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} SCOP: a.118.26.1 d.37.1.1
Probab=97.92  E-value=3.2e-05  Score=51.03  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=53.4

Q ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             999995199899999996379899999997299899999996299999999999995
Q gi|254780375|r  107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA  163 (175)
Q Consensus       107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la  163 (175)
                      ..++.++|+|+.++.+++.|++|++++++..++++....||+.|+++.+..+..+|.
T Consensus        77 ~~~ll~~l~~~~~~~ll~~l~~dd~~dll~~l~~~~~~~iL~~L~~~~r~~i~~ll~  133 (286)
T 2oux_A           77 MKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLH  133 (286)
T ss_dssp             TTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf             999999589999999998589567899998689999999997168999999999737


No 2  
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=97.79  E-value=9.4e-05  Score=48.03  Aligned_cols=57  Identities=11%  Similarity=0.105  Sum_probs=33.2

Q ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCH---HHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9999951998999999963798999999972998---99999996299999999999995
Q gi|254780375|r  107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSP---RQSSLIMSKMNPKSATMITNVVA  163 (175)
Q Consensus       107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~---~~~a~IL~~M~p~~Aa~it~~la  163 (175)
                      ..+++++|++++++.++++|++|+++++|..++.   .....+|+.|+++++.++.++|+
T Consensus        92 ~~~ll~~l~~~~~~~ll~~l~~DD~adlL~~Lp~e~~~~~~~iL~~L~~~~r~~i~~lL~  151 (473)
T 2zy9_A           92 QAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALAR  151 (473)
T ss_dssp             HHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHT
T ss_pred             HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             999999599999999998299668999998551533999999986299999999999857


No 3  
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A
Probab=97.79  E-value=0.00014  Score=47.01  Aligned_cols=59  Identities=15%  Similarity=0.204  Sum_probs=36.4

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99999995199899999996379899999997299899999996299999999999995
Q gi|254780375|r  105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA  163 (175)
Q Consensus       105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la  163 (175)
                      .....++..++++.+|++|.+|+++....|+..|+++..+.++++|+|+.++.+.+.|-
T Consensus        46 ~~~~~~~~~L~~~~~aevl~~l~~~~~~~il~~l~~~~~~~ll~~l~~Dd~~dll~~L~  104 (278)
T 2yvy_A           46 EHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVR  104 (278)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999999699878999999278989999995299999999998658136999999705


No 4  
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=97.67  E-value=0.00011  Score=47.65  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             999999951998999999963798999999972998999999962999999999999952
Q gi|254780375|r  105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVAN  164 (175)
Q Consensus       105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~  164 (175)
                      +.-..+++.++++.+|++|++|+++....++..|++++++.++++|+|++++++.+.|-.
T Consensus        66 ~~r~~l~~~L~~~~~aevl~el~~~~~~~ll~~l~~~~~~~ll~~l~~DD~adlL~~Lp~  125 (473)
T 2zy9_A           66 EHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRK  125 (473)
T ss_dssp             HHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCH
T ss_conf             999999995997568899982999999999995999999999982996689999985515


No 5  
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1
Probab=97.48  E-value=0.00015  Score=46.82  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=24.5

Q ss_pred             HCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf             199899999996379899999997299899999996299999999999995271
Q gi|254780375|r  113 KMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANML  166 (175)
Q Consensus       113 ~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~  166 (175)
                      ++....--.++.++..+..+.++...++..++.+++.|+.-.+..+-.-+..+.
T Consensus       140 ~l~~~~~~~~l~~i~~~~l~~al~~~~~e~~~~~l~~~~~r~~~vv~~e~~~~G  193 (232)
T 1lkv_X          140 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMG  193 (232)
T ss_dssp             GSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCC
T ss_pred             HCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             502210545544236544101269999999999999687989999998876369


No 6  
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=97.39  E-value=0.0021  Score=39.58  Aligned_cols=68  Identities=22%  Similarity=0.288  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH
Q ss_conf             99999999951998999999963798999999972998999999962999999999999952711214
Q gi|254780375|r  103 YNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK  170 (175)
Q Consensus       103 ~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~  170 (175)
                      ...+..+.++.|+|+.-+..|..=.+.+.+-||+.|+|++++.||+.++++...++..-|+++...+.
T Consensus       105 ~~~~~~~~L~~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~Ria~l~~v~~  172 (329)
T 3hjl_A          105 DAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNV  172 (329)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCH
T ss_pred             CCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH
T ss_conf             63457899874998999999874781599999993899999999986999889999999974479999


No 7  
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A
Probab=97.34  E-value=0.00079  Score=42.21  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=46.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHH---HHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf             9999999519989999999637989999999729989---99999962999999999999952
Q gi|254780375|r  105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPR---QSSLIMSKMNPKSATMITNVVAN  164 (175)
Q Consensus       105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~---~~a~IL~~M~p~~Aa~it~~la~  164 (175)
                      ..-..+.+.|+++.++.++++|++|++++++..++..   ....||+.|+|+.+..+..+|+-
T Consensus        70 ~~~~~il~~l~~~~~~~ll~~l~~Dd~~dll~~L~~~~~~~~~~iL~~l~~~~r~~i~~ll~y  132 (278)
T 2yvy_A           70 EEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARY  132 (278)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf             899999952999999999986581369999997056668999999972999999999987279


No 8  
>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1
Probab=97.24  E-value=0.00041  Score=44.02  Aligned_cols=57  Identities=16%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             HHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf             999519989999999637989999999729989999999629999999999999527
Q gi|254780375|r  109 DIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANM  165 (175)
Q Consensus       109 ~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~  165 (175)
                      ++.+.|+|+..+..|...++...+.||++|+++.++.||..++++.+.++...|+..
T Consensus         6 d~L~~l~p~~l~~~L~~e~pq~iA~IL~~L~~d~aA~vL~~L~~~~~~~il~~l~~~   62 (232)
T 1lkv_X            6 SFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALL   62 (232)
T ss_dssp             ------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf             998619999999999818999999999729989999999979999999999985412


No 9  
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} SCOP: a.118.26.1 d.37.1.1
Probab=96.97  E-value=0.001  Score=41.52  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHHCCHH--HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             999999519989999999637989--999999729989999999629999999999999
Q gi|254780375|r  106 NILDIYKKMDSDSAALQLEQIDPD--ISSHILMRLSPRQSSLIMSKMNPKSATMITNVV  162 (175)
Q Consensus       106 ~lv~iy~~M~p~~AA~il~~m~~d--~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~l  162 (175)
                      .-..++..++|+.+|.+|..|+.+  ....++..|+++.++.|+..|+|+.++.+...|
T Consensus        50 ~r~~l~~~L~~~~~~~vl~~l~~d~~~~~~ll~~l~~~~~~~ll~~l~~dd~~dll~~l  108 (286)
T 2oux_A           50 DRQHLYNYLSPKELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNML  108 (286)
T ss_dssp             HHHHHHHHSCHHHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf             99999995898787789988258999999999958999999999858956789999868


No 10 
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1}
Probab=96.93  E-value=0.00039  Score=44.10  Aligned_cols=50  Identities=12%  Similarity=0.102  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99899999996379899999997299899999996299999999999995
Q gi|254780375|r  114 MDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA  163 (175)
Q Consensus       114 M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la  163 (175)
                      |+++..+.+|++|++|++++++..++++....+|+.|+++.+..+..+|+
T Consensus         1 l~~~~~~~~l~~m~~dd~~~ll~~lp~~~~~~~l~~l~~~~r~~i~~~l~   50 (205)
T 3kxr_A            1 MPDNEVDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFELYDQ   50 (205)
T ss_dssp             ------CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             98899999998389778999998699999999998299999999999957


No 11 
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=95.25  E-value=0.09  Score=29.23  Aligned_cols=65  Identities=15%  Similarity=0.265  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC------CHHHHHHHHHHHHCC
Q ss_conf             99999999999519989999999637989999999729989999999629------999999999999527
Q gi|254780375|r  101 MSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKM------NPKSATMITNVVANM  165 (175)
Q Consensus       101 ~~~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M------~p~~Aa~it~~la~~  165 (175)
                      .-.-+.|+.+..+=.|+-.|-+|+.|+++.|+.||..++++....|+-.|      +|+-..++...|...
T Consensus       115 ~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~Ria~l~~v~~~~v~~le~~L~~~  185 (329)
T 3hjl_A          115 KVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEE  185 (329)
T ss_dssp             TSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             49989999998747815999999938999999999869998899999999744799999999999999988


No 12 
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1}
Probab=91.33  E-value=0.079  Score=29.58  Aligned_cols=44  Identities=7%  Similarity=0.143  Sum_probs=38.8

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99999995199899999996379899999997299899999996
Q gi|254780375|r  105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMS  148 (175)
Q Consensus       105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~  148 (175)
                      ..+..++++|+|+.++.++++++.+..-.+|..|+++....|-.
T Consensus         4 ~~~~~~l~~m~~dd~~~ll~~lp~~~~~~~l~~l~~~~r~~i~~   47 (205)
T 3kxr_A            4 NEVDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFEL   47 (205)
T ss_dssp             ---CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999998389778999998699999999998299999999999


No 13 
>1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} SCOP: a.118.14.1
Probab=85.62  E-value=1.6  Score=21.29  Aligned_cols=57  Identities=21%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             HCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
Q ss_conf             199899999996379899999997299899999996299999999999995271121
Q gi|254780375|r  113 KMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFK  169 (175)
Q Consensus       113 ~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~  169 (175)
                      .+++..--.++.+.+.+..+--|...++.....||+.|++-.+..+..-|..+.+.+
T Consensus         9 ~l~~~~l~~ll~~i~~~~l~~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~g~v~   65 (101)
T 1qc7_A            9 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVR   65 (101)
T ss_dssp             GBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf             489889999999689989999986899999999998668999999999998639988


No 14 
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=56.45  E-value=7.6  Score=17.04  Aligned_cols=62  Identities=10%  Similarity=0.121  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             999999999999999999-99999999999999999995199899999996379899999997
Q gi|254780375|r   75 IEQRVILLENHKKEYNLW-FQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILM  136 (175)
Q Consensus        75 l~~r~~eLe~~~~ei~~~-l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~  136 (175)
                      |+.++.+|+....+-... ..+.+..+.+..+-.-+||++++|=+...+--.-+...+.+++.
T Consensus        24 Le~kI~eL~~~~~~~~~d~~~ei~~Le~k~~~l~~~iy~~Ls~wq~Vq~ARhp~RP~~~DyI~   86 (327)
T 2f9i_A           24 IRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIP   86 (327)
T ss_dssp             HHHHHHCC-----------CTTHHHHHHHHHHHHHHHHHSCCHHHHHHHHTBTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHH
T ss_conf             999999987455056787799999999999999999870899999999974789997799998


No 15 
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A* 1uc5_A* 1iwp_A* 1mmf_A*
Probab=47.36  E-value=11  Score=15.98  Aligned_cols=38  Identities=8%  Similarity=0.137  Sum_probs=24.1

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHH
Q ss_conf             99999995199899999996379899999997299899
Q gi|254780375|r  105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQ  142 (175)
Q Consensus       105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~  142 (175)
                      +.++++...|.|.+.+++++.|+.-+..--+.+|.+|+
T Consensus        99 ~ei~~l~~~~TPAK~~eVv~~ln~vEmmma~qKMRaRr  136 (554)
T 1eex_A           99 SEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARR  136 (554)
T ss_dssp             HHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHHHHCSBS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf             99999870488799999997357999999999741537


No 16 
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=35.18  E-value=18  Score=14.74  Aligned_cols=40  Identities=15%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf             99999999999999519989999999637989999999729
Q gi|254780375|r   98 SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRL  138 (175)
Q Consensus        98 ~~~~~~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m  138 (175)
                      .+...++..+.+.|+.++=..-|..|+ |+.+.+=.++.+|
T Consensus        15 ~i~e~ni~~is~~Y~~Isl~~lA~~l~-i~~~~ve~~l~~m   54 (84)
T 1ufm_A           15 AVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQM   54 (84)
T ss_dssp             HHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEEEHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             999999999998505545999999969-6999999999999


No 17 
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.01  E-value=20  Score=14.40  Aligned_cols=36  Identities=11%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999
Q gi|254780375|r   56 VRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNL   91 (175)
Q Consensus        56 ~re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~   91 (175)
                      .+-.++..+...++.++++++++.+-+..++.|++.
T Consensus        30 ~K~eElr~rDe~I~~LE~ELdeKD~lIr~LqnELDK   65 (72)
T 3nmd_A           30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             989999988999999999986089999999988999


No 18 
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.33  E-value=22  Score=14.12  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999
Q gi|254780375|r   60 DYLSQKKVLEDLQKDIEQRVILLENHKKEYN   90 (175)
Q Consensus        60 ~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~   90 (175)
                      ++..+-++|+...+++++|+..|+.-..-+.
T Consensus         7 ~LE~r~kdLe~~nseLEerisTLqnEN~MLR   37 (42)
T 2oqq_A            7 ELENRVKDLENKNSELEERLSTLQNENQMLR   37 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999898865999999999984789999


No 19 
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.36  E-value=24  Score=13.91  Aligned_cols=49  Identities=10%  Similarity=0.359  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999
Q gi|254780375|r   62 LSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDI  110 (175)
Q Consensus        62 ~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~i  110 (175)
                      ..+...|.....++++++.+|+...+.+...+...+.......+.+..+
T Consensus        80 ~~~~~~l~~~~~~l~~~i~~l~~~l~~L~~~i~~~~~~~~~~~e~l~~~  128 (142)
T 3gp4_A           80 EARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF  128 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
T ss_conf             9999999999999999999999999999999997764335489998714


No 20 
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.25  E-value=24  Score=13.90  Aligned_cols=33  Identities=6%  Similarity=0.137  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999
Q gi|254780375|r   66 KVLEDLQKDIEQRVILLENHKKEYNLWFQKYDS   98 (175)
Q Consensus        66 ~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~   98 (175)
                      ++.+.++.+...++..+++++..+..++.+...
T Consensus         5 qe~~~L~~Ek~~r~~rI~kK~~~LqeLi~Q~ia   37 (155)
T 2aze_A            5 QECQNLEVERQRRLERIKQKQSQLQELILQQIA   37 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999


No 21 
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.08  E-value=25  Score=13.77  Aligned_cols=42  Identities=10%  Similarity=0.100  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999999999999
Q gi|254780375|r   57 RERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDS   98 (175)
Q Consensus        57 re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~   98 (175)
                      -+.+++-++..+..|...+-.+..+|..++.++..+..+..+
T Consensus        19 LE~~lAfqe~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~   60 (78)
T 3efg_A           19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999999997


No 22 
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=26.59  E-value=26  Score=13.71  Aligned_cols=22  Identities=18%  Similarity=0.370  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254780375|r   68 LEDLQKDIEQRVILLENHKKEY   89 (175)
Q Consensus        68 L~~le~~l~~r~~eLe~~~~ei   89 (175)
                      ++..=.+|++++++|++++..+
T Consensus         6 IEqKIedId~qIaeLe~KR~~L   27 (33)
T 1r48_A            6 IEQKIDDIDHEIADLQAKRTRL   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998987999999999999999


No 23 
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Probab=24.86  E-value=28  Score=13.51  Aligned_cols=58  Identities=12%  Similarity=0.193  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHC--CHHHHHHHHH
Q ss_conf             99999999999999999999999999999999951-9989999999637--9899999997
Q gi|254780375|r   79 VILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK-MDSDSAALQLEQI--DPDISSHILM  136 (175)
Q Consensus        79 ~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~-M~p~~AA~il~~m--~~d~aa~iL~  136 (175)
                      ....+.+...+++++-++--+....++..++.|++ +.|.+.|.+...=  |++....+|.
T Consensus        22 ~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~~GArvVARAW~Dp~Fk~rLL~   82 (216)
T 3hht_A           22 QSFWEARAKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLE   82 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf             7659999999999999859999999999999987634985226788987589999999997


No 24 
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initiative, structural genomics; 2.60A {Corynebacterium diphtheriae NCTC13129}
Probab=24.65  E-value=28  Score=13.49  Aligned_cols=38  Identities=18%  Similarity=0.222  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf             99999999999999999999999519989999999637
Q gi|254780375|r   89 YNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQI  126 (175)
Q Consensus        89 i~~~l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m  126 (175)
                      ++.++..++...+.....-..|-..|+|.+||...++.
T Consensus         6 lkdllahrenlmdsakrarsaitddmdpadaaqavenv   43 (141)
T 2r9i_A            6 LKDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENV   43 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             89999989988778898886513578858899999999


No 25 
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1
Probab=23.02  E-value=30  Score=13.29  Aligned_cols=20  Identities=20%  Similarity=0.645  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3788999998999999999999841
Q gi|254780375|r    2 ILLPIIYYYKKRDMLSQLLFLLFFF   26 (175)
Q Consensus         2 i~ip~if~~~~~~~l~~~~~~l~~~   26 (175)
                      |+||++.     =+++++.+.+.|.
T Consensus        13 ilipvv~-----wl~p~vvmgllfi   32 (38)
T 1jb0_I           13 IFIPVVC-----WLMPTVVMGLLFL   32 (38)
T ss_dssp             HHHHHHH-----THHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHHHHHE
T ss_conf             8999999-----9999999988715


No 26 
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=22.97  E-value=30  Score=13.28  Aligned_cols=57  Identities=14%  Similarity=0.219  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHC--CHHHHHHHHH
Q ss_conf             9999999999999999999999999999999951-9989999999637--9899999997
Q gi|254780375|r   80 ILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK-MDSDSAALQLEQI--DPDISSHILM  136 (175)
Q Consensus        80 ~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~-M~p~~AA~il~~m--~~d~aa~iL~  136 (175)
                      ++...+-+.++.++-++-=+....++.+++.|++ +.|.+.|.+...=  |++.-..+|.
T Consensus        14 ~~~~~Rv~Ale~lLieKGli~~~~i~~~ie~~~~~vgP~~GArvVArAW~Dp~Fk~~Ll~   73 (203)
T 1ugp_A           14 KEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLA   73 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf             359999999999999859999999999999986434986531135686489899999998


No 27 
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.52  E-value=31  Score=13.23  Aligned_cols=30  Identities=10%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999
Q gi|254780375|r   66 KVLEDLQKDIEQRVILLENHKKEYNLWFQK   95 (175)
Q Consensus        66 ~eL~~le~~l~~r~~eLe~~~~ei~~~l~~   95 (175)
                      ..+...-.+|++++++|+.++.++..|...
T Consensus        42 ~ll~~kl~ei~~~i~eL~~l~~~L~~l~~~   71 (99)
T 1q08_A           42 GIVQERLQEVEARIAELQSMQRSLQRLNDA   71 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999984


Done!