Query gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 175 No_of_seqs 153 out of 463 Neff 5.9 Searched_HMMs 23785 Date Mon May 30 10:07:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780375.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2oux_A Magnesium transporter; 97.9 3.2E-05 1.3E-09 51.0 7.5 57 107-163 77-133 (286) 2 2zy9_A Mg2+ transporter MGTE; 97.8 9.4E-05 4E-09 48.0 8.1 57 107-163 92-151 (473) 3 2yvy_A MGTE, Mg2+ transporter 97.8 0.00014 5.7E-09 47.0 8.9 59 105-163 46-104 (278) 4 2zy9_A Mg2+ transporter MGTE; 97.7 0.00011 4.5E-09 47.7 6.9 60 105-164 66-125 (473) 5 1lkv_X Flagellar motor switch 97.5 0.00015 6.2E-09 46.8 5.4 54 113-166 140-193 (232) 6 3hjl_A Flagellar motor switch 97.4 0.0021 8.6E-08 39.6 10.3 68 103-170 105-172 (329) 7 2yvy_A MGTE, Mg2+ transporter 97.3 0.00079 3.3E-08 42.2 7.8 60 105-164 70-132 (278) 8 1lkv_X Flagellar motor switch 97.2 0.00041 1.7E-08 44.0 5.4 57 109-165 6-62 (232) 9 2oux_A Magnesium transporter; 97.0 0.001 4.3E-08 41.5 5.3 57 106-162 50-108 (286) 10 3kxr_A Magnesium transporter, 96.9 0.00039 1.7E-08 44.1 2.9 50 114-163 1-50 (205) 11 3hjl_A Flagellar motor switch 95.3 0.09 3.8E-06 29.2 7.9 65 101-165 115-185 (329) 12 3kxr_A Magnesium transporter, 91.3 0.079 3.3E-06 29.6 2.1 44 105-148 4-47 (205) 13 1qc7_A Protein (FLIG); flagell 85.6 1.6 6.8E-05 21.3 6.8 57 113-169 9-65 (101) 14 2f9i_A Acetyl-coenzyme A carbo 56.4 7.6 0.00032 17.0 3.1 62 75-136 24-86 (327) 15 1eex_A Propanediol dehydratase 47.4 11 0.00047 16.0 2.8 38 105-142 99-136 (554) 16 1ufm_A COP9 complex subunit 4; 35.2 18 0.00074 14.7 2.2 40 98-138 15-54 (84) 17 3nmd_A CGMP dependent protein 33.0 20 0.00084 14.4 6.9 36 56-91 30-65 (72) 18 2oqq_A Transcription factor HY 30.3 22 0.00093 14.1 6.0 31 60-90 7-37 (42) 19 3gp4_A Transcriptional regulat 28.4 24 0.001 13.9 9.3 49 62-110 80-128 (142) 20 2aze_A Transcription factor DP 28.2 24 0.001 13.9 6.2 33 66-98 5-37 (155) 21 3efg_A Protein SLYX homolog; x 27.1 25 0.0011 13.8 5.4 42 57-98 19-60 (78) 22 1r48_A Proline/betaine transpo 26.6 26 0.0011 13.7 4.0 22 68-89 6-27 (33) 23 3hht_A NitrIle hydratase alpha 24.9 28 0.0012 13.5 5.3 58 79-136 22-82 (216) 24 2r9i_A Putative phage capsid p 24.6 28 0.0012 13.5 4.3 38 89-126 6-43 (141) 25 1jb0_I Photosystem 1 reaction 23.0 30 0.0013 13.3 2.5 20 2-26 13-32 (38) 26 1ugp_A NitrIle hydratase alpha 23.0 30 0.0013 13.3 6.1 57 80-136 14-73 (203) 27 1q08_A Zn(II)-responsive regul 22.5 31 0.0013 13.2 5.3 30 66-95 42-71 (99) No 1 >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} SCOP: a.118.26.1 d.37.1.1 Probab=97.92 E-value=3.2e-05 Score=51.03 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=53.4 Q ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 999995199899999996379899999997299899999996299999999999995 Q gi|254780375|r 107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 (175) Q Consensus 107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la 163 (175) ..++.++|+|+.++.+++.|++|++++++..++++....||+.|+++.+..+..+|. T Consensus 77 ~~~ll~~l~~~~~~~ll~~l~~dd~~dll~~l~~~~~~~iL~~L~~~~r~~i~~ll~ 133 (286) T 2oux_A 77 MKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLH 133 (286) T ss_dssp TTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTT T ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCC T ss_conf 999999589999999998589567899998689999999997168999999999737 No 2 >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A Probab=97.79 E-value=9.4e-05 Score=48.03 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=33.2 Q ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCH---HHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 9999951998999999963798999999972998---99999996299999999999995 Q gi|254780375|r 107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSP---RQSSLIMSKMNPKSATMITNVVA 163 (175) Q Consensus 107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~---~~~a~IL~~M~p~~Aa~it~~la 163 (175) ..+++++|++++++.++++|++|+++++|..++. .....+|+.|+++++.++.++|+ T Consensus 92 ~~~ll~~l~~~~~~~ll~~l~~DD~adlL~~Lp~e~~~~~~~iL~~L~~~~r~~i~~lL~ 151 (473) T 2zy9_A 92 QAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALAR 151 (473) T ss_dssp HHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHT T ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 999999599999999998299668999998551533999999986299999999999857 No 3 >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A Probab=97.79 E-value=0.00014 Score=47.01 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=36.4 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 99999995199899999996379899999997299899999996299999999999995 Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 (175) Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la 163 (175) .....++..++++.+|++|.+|+++....|+..|+++..+.++++|+|+.++.+.+.|- T Consensus 46 ~~~~~~~~~L~~~~~aevl~~l~~~~~~~il~~l~~~~~~~ll~~l~~Dd~~dll~~L~ 104 (278) T 2yvy_A 46 EHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVR 104 (278) T ss_dssp HHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999699878999999278989999995299999999998658136999999705 No 4 >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A Probab=97.67 E-value=0.00011 Score=47.65 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=53.2 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHC Q ss_conf 999999951998999999963798999999972998999999962999999999999952 Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVAN 164 (175) Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~ 164 (175) +.-..+++.++++.+|++|++|+++....++..|++++++.++++|+|++++++.+.|-. T Consensus 66 ~~r~~l~~~L~~~~~aevl~el~~~~~~~ll~~l~~~~~~~ll~~l~~DD~adlL~~Lp~ 125 (473) T 2zy9_A 66 EHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRK 125 (473) T ss_dssp HHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCH T ss_conf 999999995997568899982999999999995999999999982996689999985515 No 5 >1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1 Probab=97.48 E-value=0.00015 Score=46.82 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=24.5 Q ss_pred HCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCC Q ss_conf 199899999996379899999997299899999996299999999999995271 Q gi|254780375|r 113 KMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANML 166 (175) Q Consensus 113 ~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~ 166 (175) ++....--.++.++..+..+.++...++..++.+++.|+.-.+..+-.-+..+. T Consensus 140 ~l~~~~~~~~l~~i~~~~l~~al~~~~~e~~~~~l~~~~~r~~~vv~~e~~~~G 193 (232) T 1lkv_X 140 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMG 193 (232) T ss_dssp GSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCC T ss_pred HCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC T ss_conf 502210545544236544101269999999999999687989999998876369 No 6 >3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus} Probab=97.39 E-value=0.0021 Score=39.58 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=60.9 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH Q ss_conf 99999999951998999999963798999999972998999999962999999999999952711214 Q gi|254780375|r 103 YNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFKK 170 (175) Q Consensus 103 ~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~~ 170 (175) ...+..+.++.|+|+.-+..|..=.+.+.+-||+.|+|++++.||+.++++...++..-|+++...+. T Consensus 105 ~~~~~~~~L~~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~Ria~l~~v~~ 172 (329) T 3hjl_A 105 DAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNV 172 (329) T ss_dssp HHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCH T ss_pred CCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCH T ss_conf 63457899874998999999874781599999993899999999986999889999999974479999 No 7 >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A Probab=97.34 E-value=0.00079 Score=42.21 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=46.3 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHH---HHHHHHHHCCHHHHHHHHHHHHC Q ss_conf 9999999519989999999637989999999729989---99999962999999999999952 Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPR---QSSLIMSKMNPKSATMITNVVAN 164 (175) Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~---~~a~IL~~M~p~~Aa~it~~la~ 164 (175) ..-..+.+.|+++.++.++++|++|++++++..++.. ....||+.|+|+.+..+..+|+- T Consensus 70 ~~~~~il~~l~~~~~~~ll~~l~~Dd~~dll~~L~~~~~~~~~~iL~~l~~~~r~~i~~ll~y 132 (278) T 2yvy_A 70 EEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARY 132 (278) T ss_dssp HHHHHHHHHSCHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHHS T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC T ss_conf 899999952999999999986581369999997056668999999972999999999987279 No 8 >1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} SCOP: a.118.14.1 Probab=97.24 E-value=0.00041 Score=44.02 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=29.0 Q ss_pred HHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCC Q ss_conf 999519989999999637989999999729989999999629999999999999527 Q gi|254780375|r 109 DIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANM 165 (175) Q Consensus 109 ~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~ 165 (175) ++.+.|+|+..+..|...++...+.||++|+++.++.||..++++.+.++...|+.. T Consensus 6 d~L~~l~p~~l~~~L~~e~pq~iA~IL~~L~~d~aA~vL~~L~~~~~~~il~~l~~~ 62 (232) T 1lkv_X 6 SFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALL 62 (232) T ss_dssp ------CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCC T ss_conf 998619999999999818999999999729989999999979999999999985412 No 9 >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} SCOP: a.118.26.1 d.37.1.1 Probab=96.97 E-value=0.001 Score=41.52 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=33.2 Q ss_pred HHHHHHHHCCHHHHHHHHHHCCHH--HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 999999519989999999637989--999999729989999999629999999999999 Q gi|254780375|r 106 NILDIYKKMDSDSAALQLEQIDPD--ISSHILMRLSPRQSSLIMSKMNPKSATMITNVV 162 (175) Q Consensus 106 ~lv~iy~~M~p~~AA~il~~m~~d--~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~l 162 (175) .-..++..++|+.+|.+|..|+.+ ....++..|+++.++.|+..|+|+.++.+...| T Consensus 50 ~r~~l~~~L~~~~~~~vl~~l~~d~~~~~~ll~~l~~~~~~~ll~~l~~dd~~dll~~l 108 (286) T 2oux_A 50 DRQHLYNYLSPKELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNML 108 (286) T ss_dssp HHHHHHHHSCHHHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHS T ss_pred HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC T ss_conf 99999995898787789988258999999999958999999999858956789999868 No 10 >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1} Probab=96.93 E-value=0.00039 Score=44.10 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=47.2 Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 99899999996379899999997299899999996299999999999995 Q gi|254780375|r 114 MDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 (175) Q Consensus 114 M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la 163 (175) |+++..+.+|++|++|++++++..++++....+|+.|+++.+..+..+|+ T Consensus 1 l~~~~~~~~l~~m~~dd~~~ll~~lp~~~~~~~l~~l~~~~r~~i~~~l~ 50 (205) T 3kxr_A 1 MPDNEVDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFELYDQ 50 (205) T ss_dssp ------CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 98899999998389778999998699999999998299999999999957 No 11 >3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus} Probab=95.25 E-value=0.09 Score=29.23 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=53.1 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC------CHHHHHHHHHHHHCC Q ss_conf 99999999999519989999999637989999999729989999999629------999999999999527 Q gi|254780375|r 101 MSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKM------NPKSATMITNVVANM 165 (175) Q Consensus 101 ~~~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M------~p~~Aa~it~~la~~ 165 (175) .-.-+.|+.+..+=.|+-.|-+|+.|+++.|+.||..++++....|+-.| +|+-..++...|... T Consensus 115 ~~~~~~La~~L~~EhPQtiAliLs~L~~~~AA~VL~~Lp~~~r~eVv~Ria~l~~v~~~~v~~le~~L~~~ 185 (329) T 3hjl_A 115 KVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEE 185 (329) T ss_dssp TSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 49989999998747815999999938999999999869998899999999744799999999999999988 No 12 >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1} Probab=91.33 E-value=0.079 Score=29.58 Aligned_cols=44 Identities=7% Similarity=0.143 Sum_probs=38.8 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999995199899999996379899999997299899999996 Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMS 148 (175) Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~ 148 (175) ..+..++++|+|+.++.++++++.+..-.+|..|+++....|-. T Consensus 4 ~~~~~~l~~m~~dd~~~ll~~lp~~~~~~~l~~l~~~~r~~i~~ 47 (205) T 3kxr_A 4 NEVDLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFEL 47 (205) T ss_dssp ---CCSGGGSCHHHHHHTTTTSCHHHHHHHHHHSCHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHH T ss_conf 99999998389778999998699999999998299999999999 No 13 >1qc7_A Protein (FLIG); flagellar motor switch protein, structural protein; 2.20A {Thermotoga maritima} SCOP: a.118.14.1 Probab=85.62 E-value=1.6 Score=21.29 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=36.6 Q ss_pred HCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH Q ss_conf 199899999996379899999997299899999996299999999999995271121 Q gi|254780375|r 113 KMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFK 169 (175) Q Consensus 113 ~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~ 169 (175) .+++..--.++.+.+.+..+--|...++.....||+.|++-.+..+..-|..+.+.+ T Consensus 9 ~l~~~~l~~ll~~i~~~~l~~ALkga~~~~~~~il~nmS~R~~~~l~ee~~~~g~v~ 65 (101) T 1qc7_A 9 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVR 65 (101) T ss_dssp GBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCC T ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC T ss_conf 489889999999689989999986899999999998668999999999998639988 No 14 >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=56.45 E-value=7.6 Score=17.04 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 999999999999999999-99999999999999999995199899999996379899999997 Q gi|254780375|r 75 IEQRVILLENHKKEYNLW-FQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILM 136 (175) Q Consensus 75 l~~r~~eLe~~~~ei~~~-l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~ 136 (175) |+.++.+|+....+-... ..+.+..+.+..+-.-+||++++|=+...+--.-+...+.+++. T Consensus 24 Le~kI~eL~~~~~~~~~d~~~ei~~Le~k~~~l~~~iy~~Ls~wq~Vq~ARhp~RP~~~DyI~ 86 (327) T 2f9i_A 24 IRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIP 86 (327) T ss_dssp HHHHHHCC-----------CTTHHHHHHHHHHHHHHHHHSCCHHHHHHHHTBTTSCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHH T ss_conf 999999987455056787799999999999999999870899999999974789997799998 No 15 >1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A* 1uc5_A* 1iwp_A* 1mmf_A* Probab=47.36 E-value=11 Score=15.98 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=24.1 Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHH Q ss_conf 99999995199899999996379899999997299899 Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQ 142 (175) Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~ 142 (175) +.++++...|.|.+.+++++.|+.-+..--+.+|.+|+ T Consensus 99 ~ei~~l~~~~TPAK~~eVv~~ln~vEmmma~qKMRaRr 136 (554) T 1eex_A 99 SEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARR 136 (554) T ss_dssp HHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHHHHCSBS T ss_pred HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC T ss_conf 99999870488799999997357999999999741537 No 16 >1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Probab=35.18 E-value=18 Score=14.74 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC Q ss_conf 99999999999999519989999999637989999999729 Q gi|254780375|r 98 SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRL 138 (175) Q Consensus 98 ~~~~~~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m 138 (175) .+...++..+.+.|+.++=..-|..|+ |+.+.+=.++.+| T Consensus 15 ~i~e~ni~~is~~Y~~Isl~~lA~~l~-i~~~~ve~~l~~m 54 (84) T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQM 54 (84) T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCEEEHHHHHHHHC-CCHHHHHHHHHHH T ss_conf 999999999998505545999999969-6999999999999 No 17 >3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Probab=33.01 E-value=20 Score=14.40 Aligned_cols=36 Identities=11% Similarity=0.305 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999 Q gi|254780375|r 56 VRERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNL 91 (175) Q Consensus 56 ~re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~ 91 (175) .+-.++..+...++.++++++++.+-+..++.|++. T Consensus 30 ~K~eElr~rDe~I~~LE~ELdeKD~lIr~LqnELDK 65 (72) T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 989999988999999999986089999999988999 No 18 >2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Probab=30.33 E-value=22 Score=14.12 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999 Q gi|254780375|r 60 DYLSQKKVLEDLQKDIEQRVILLENHKKEYN 90 (175) Q Consensus 60 ~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~ 90 (175) ++..+-++|+...+++++|+..|+.-..-+. T Consensus 7 ~LE~r~kdLe~~nseLEerisTLqnEN~MLR 37 (42) T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999898865999999999984789999 No 19 >3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} Probab=28.36 E-value=24 Score=13.91 Aligned_cols=49 Identities=10% Similarity=0.359 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999999999999999999999 Q gi|254780375|r 62 LSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDI 110 (175) Q Consensus 62 ~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~i 110 (175) ..+...|.....++++++.+|+...+.+...+...+.......+.+..+ T Consensus 80 ~~~~~~l~~~~~~l~~~i~~l~~~l~~L~~~i~~~~~~~~~~~e~l~~~ 128 (142) T 3gp4_A 80 EARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC T ss_conf 9999999999999999999999999999999997764335489998714 No 20 >2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1 Probab=28.25 E-value=24 Score=13.90 Aligned_cols=33 Identities=6% Similarity=0.137 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999 Q gi|254780375|r 66 KVLEDLQKDIEQRVILLENHKKEYNLWFQKYDS 98 (175) Q Consensus 66 ~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~ 98 (175) ++.+.++.+...++..+++++..+..++.+... T Consensus 5 qe~~~L~~Ek~~r~~rI~kK~~~LqeLi~Q~ia 37 (155) T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIA 37 (155) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 21 >3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Probab=27.08 E-value=25 Score=13.77 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999999999999999 Q gi|254780375|r 57 RERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDS 98 (175) Q Consensus 57 re~~l~~~e~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~ 98 (175) -+.+++-++..+..|...+-.+..+|..++.++..+..+..+ T Consensus 19 LE~~lAfqe~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 60 (78) T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999997 No 22 >1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1 Probab=26.59 E-value=26 Score=13.71 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254780375|r 68 LEDLQKDIEQRVILLENHKKEY 89 (175) Q Consensus 68 L~~le~~l~~r~~eLe~~~~ei 89 (175) ++..=.+|++++++|++++..+ T Consensus 6 IEqKIedId~qIaeLe~KR~~L 27 (33) T 1r48_A 6 IEQKIDDIDHEIADLQAKRTRL 27 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998987999999999999999 No 23 >3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A Probab=24.86 E-value=28 Score=13.51 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=44.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHC--CHHHHHHHHH Q ss_conf 99999999999999999999999999999999951-9989999999637--9899999997 Q gi|254780375|r 79 VILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK-MDSDSAALQLEQI--DPDISSHILM 136 (175) Q Consensus 79 ~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~-M~p~~AA~il~~m--~~d~aa~iL~ 136 (175) ....+.+...+++++-++--+....++..++.|++ +.|.+.|.+...= |++....+|. T Consensus 22 ~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~~GArvVARAW~Dp~Fk~rLL~ 82 (216) T 3hht_A 22 QSFWEARAKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLE 82 (216) T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH T ss_conf 7659999999999999859999999999999987634985226788987589999999997 No 24 >2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initiative, structural genomics; 2.60A {Corynebacterium diphtheriae NCTC13129} Probab=24.65 E-value=28 Score=13.49 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC Q ss_conf 99999999999999999999999519989999999637 Q gi|254780375|r 89 YNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQI 126 (175) Q Consensus 89 i~~~l~~~~~~~~~~~~~lv~iy~~M~p~~AA~il~~m 126 (175) ++.++..++...+.....-..|-..|+|.+||...++. T Consensus 6 lkdllahrenlmdsakrarsaitddmdpadaaqavenv 43 (141) T 2r9i_A 6 LKDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENV 43 (141) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 89999989988778898886513578858899999999 No 25 >1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 Probab=23.02 E-value=30 Score=13.29 Aligned_cols=20 Identities=20% Similarity=0.645 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3788999998999999999999841 Q gi|254780375|r 2 ILLPIIYYYKKRDMLSQLLFLLFFF 26 (175) Q Consensus 2 i~ip~if~~~~~~~l~~~~~~l~~~ 26 (175) |+||++. =+++++.+.+.|. T Consensus 13 ilipvv~-----wl~p~vvmgllfi 32 (38) T 1jb0_I 13 IFIPVVC-----WLMPTVVMGLLFL 32 (38) T ss_dssp HHHHHHH-----THHHHHHHHHHHH T ss_pred HHHHHHH-----HHHHHHHHHHHHE T ss_conf 8999999-----9999999988715 No 26 >1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A Probab=22.97 E-value=30 Score=13.28 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHC--CHHHHHHHHH Q ss_conf 9999999999999999999999999999999951-9989999999637--9899999997 Q gi|254780375|r 80 ILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK-MDSDSAALQLEQI--DPDISSHILM 136 (175) Q Consensus 80 ~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~-M~p~~AA~il~~m--~~d~aa~iL~ 136 (175) ++...+-+.++.++-++-=+....++.+++.|++ +.|.+.|.+...= |++.-..+|. T Consensus 14 ~~~~~Rv~Ale~lLieKGli~~~~i~~~ie~~~~~vgP~~GArvVArAW~Dp~Fk~~Ll~ 73 (203) T 1ugp_A 14 KEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLA 73 (203) T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHH T ss_conf 359999999999999859999999999999986434986531135686489899999998 No 27 >1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A Probab=22.52 E-value=31 Score=13.23 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999999 Q gi|254780375|r 66 KVLEDLQKDIEQRVILLENHKKEYNLWFQK 95 (175) Q Consensus 66 ~eL~~le~~l~~r~~eLe~~~~ei~~~l~~ 95 (175) ..+...-.+|++++++|+.++.++..|... T Consensus 42 ~ll~~kl~ei~~~i~eL~~l~~~L~~l~~~ 71 (99) T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999984 Done!