Query gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 175
No_of_seqs 153 out of 463
Neff 5.9
Searched_HMMs 13730
Date Wed Jun 1 05:23:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780375.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ouxa1 a.118.26.1 (A:6-135) M 98.4 4.6E-07 3.4E-11 61.1 7.5 57 107-163 71-127 (130)
2 d2yvxa1 a.118.26.1 (A:7-131) M 97.6 5.2E-05 3.8E-09 48.2 5.5 60 105-164 37-96 (125)
3 d2ouxa1 a.118.26.1 (A:6-135) M 97.4 0.0001 7.5E-09 46.3 5.3 58 105-162 43-102 (130)
4 d1lkvx_ a.118.14.1 (X:) FliG { 97.3 0.00016 1.2E-08 45.0 5.4 54 113-166 129-182 (213)
5 d2yvxa1 a.118.26.1 (A:7-131) M 97.3 4E-05 2.9E-09 48.9 2.0 59 105-163 61-122 (125)
6 d1lkvx_ a.118.14.1 (X:) FliG { 97.2 0.00026 1.9E-08 43.7 5.4 51 106-156 4-54 (213)
7 d1qc7a_ a.118.14.1 (A:) FliG { 81.9 1.3 9.7E-05 20.3 6.8 58 112-169 8-65 (101)
8 d1eexa_ c.1.19.3 (A:) Diol deh 48.4 6.1 0.00045 16.1 2.8 38 105-142 99-136 (551)
9 d1ugpa_ d.149.1.1 (A:) Cobalt- 35.5 11 0.00077 14.7 6.1 59 78-136 12-73 (203)
10 d1q08a_ a.6.1.3 (A:) Transcrip 31.0 12 0.0009 14.2 5.3 30 66-95 42-71 (94)
11 d1v29a_ d.149.1.1 (A:) Cobalt- 30.3 13 0.00093 14.1 5.4 58 79-136 12-72 (203)
12 d1ufma_ a.4.5.47 (A:) COP9 sig 27.6 14 0.001 13.8 2.2 41 97-138 14-54 (84)
13 d2azea1 e.63.1.1 (A:199-346) T 25.4 16 0.0011 13.6 6.2 34 66-99 2-35 (148)
No 1
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=98.40 E-value=4.6e-07 Score=61.10 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=54.1
Q ss_pred HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999995199899999996379899999997299899999996299999999999995
Q gi|254780375|r 107 ILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVA 163 (175)
Q Consensus 107 lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la 163 (175)
...++++|+|+.++.+++.|++|++++++..|+++.+..||+.|+|+.+..+..+|+
T Consensus 71 ~~~il~~l~~~~~a~il~~m~~DDaadll~~L~~~~~~~iL~~l~~~~r~~i~~lL~ 127 (130)
T d2ouxa1 71 MKDYLAEMRPSYAADMLAEMYTDNAVDLLNMLDKSQKAKYLSLLSSEEAGEIKELLH 127 (130)
T ss_dssp TTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 999986699999999998768687999999799999999998599999999999849
No 2
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=97.59 E-value=5.2e-05 Score=48.17 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 999999951998999999963798999999972998999999962999999999999952
Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVAN 164 (175)
Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~ 164 (175)
.....+|+.++++.+|.+|.+|+++....|+..|++...+.+++.|+|+.++.+.+.|-.
T Consensus 37 ~~r~~l~~~l~~~~~aev~~~L~~~~~~~il~~l~~~~~~~~l~~m~~DD~adll~~L~~ 96 (125)
T d2yvxa1 37 EHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRK 96 (125)
T ss_dssp THHHHHTTTSCHHHHHHHHHTSCHHHHHHTTSSSCHHHHHHHTTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCH
T ss_conf 999999822998888999996799999999970789999999987894579999997888
No 3
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=97.42 E-value=0.0001 Score=46.26 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHH--HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 9999999519989999999637989--999999729989999999629999999999999
Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPD--ISSHILMRLSPRQSSLIMSKMNPKSATMITNVV 162 (175)
Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d--~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~l 162 (175)
..-..+|+.++|+.+|.+|..|+.+ ....++..|+++.++.|++.|+|+.|+.+.+.|
T Consensus 43 ~~r~~l~~~l~~~~~a~vl~~l~~~~~~~~~il~~l~~~~~a~il~~m~~DDaadll~~L 102 (130)
T d2ouxa1 43 KDRQHLYNYLSPKELADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTDNAVDLLNML 102 (130)
T ss_dssp HHHHHHHHHSCHHHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 689999998520878999998111099999998669999999999876868799999979
No 4
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=97.33 E-value=0.00016 Score=44.99 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=27.5
Q ss_pred HCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 199899999996379899999997299899999996299999999999995271
Q gi|254780375|r 113 KMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANML 166 (175)
Q Consensus 113 ~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~ 166 (175)
.+.+..--.++.+...+..+.++..++...++.++..|+.-.+..+..-+..+.
T Consensus 129 ~l~~~~~~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G 182 (213)
T d1lkvx_ 129 KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMG 182 (213)
T ss_dssp GSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCC
T ss_pred HHCCCCHHHHHHHHHHHHHEEEHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 972030767787731000121000389999999999699989899987534159
No 5
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=97.30 E-value=4e-05 Score=48.88 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCH---HHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999999951998999999963798999999972998---99999996299999999999995
Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSP---RQSSLIMSKMNPKSATMITNVVA 163 (175)
Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~---~~~a~IL~~M~p~~Aa~it~~la 163 (175)
..-..+.+.|+++.++.++++|++|+++++|..|+. ..+..||..|+++.+..+..+|+
T Consensus 61 ~~~~~il~~l~~~~~~~~l~~m~~DD~adll~~L~~e~~~~~~~iL~~l~~~~r~~i~~lL~ 122 (125)
T d2yvxa1 61 EEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALAR 122 (125)
T ss_dssp HHHHHTTSSSCHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHHHHGGGSCHHHHHHHTSSSS
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 99999997078999999998789457999999788877999999998199999999999828
No 6
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=97.21 E-value=0.00026 Score=43.74 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Q ss_conf 999999519989999999637989999999729989999999629999999
Q gi|254780375|r 106 NILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSAT 156 (175)
Q Consensus 106 ~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa 156 (175)
.+++..+...|+.+|.+|+.|+++.+++||..++++....|+..|++....
T Consensus 4 ~la~~l~~e~p~~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~ 54 (213)
T d1lkvx_ 4 QLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERT 54 (213)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 999999806999999999729988999999969999999999960500233
No 7
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=81.91 E-value=1.3 Score=20.33 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
Q ss_conf 5199899999996379899999997299899999996299999999999995271121
Q gi|254780375|r 112 KKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATMITNVVANMLKFK 169 (175)
Q Consensus 112 ~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~~a~IL~~M~p~~Aa~it~~la~~~~~~ 169 (175)
..++|..--.++.+.+.+..+--|...++.....||+.|++-.+..+..-+..+...+
T Consensus 8 ~~l~~~~l~~llr~i~~~~l~~ALkga~~~~~~~il~nms~R~~~~l~ee~~~~g~v~ 65 (101)
T d1qc7a_ 8 LKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVR 65 (101)
T ss_dssp GGBCHHHHHHHHTSSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCC
T ss_pred HCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 5589889999999789889999986799999999998637999999999998639988
No 8
>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella oxytoca [TaxId: 571]}
Probab=48.37 E-value=6.1 Score=16.14 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCHHH
Q ss_conf 99999995199899999996379899999997299899
Q gi|254780375|r 105 KNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQ 142 (175)
Q Consensus 105 ~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m~~~~ 142 (175)
+.++++...|.|.+.+++++.|+.-+..--+.+|.+|+
T Consensus 99 ~ei~~l~~~~TPAK~~eVv~~ln~vEmmma~qKMRaRr 136 (551)
T d1eexa_ 99 SEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARR 136 (551)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHHHHCSBS
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 99999870588799999997357999999999741537
No 9
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=35.46 E-value=11 Score=14.65 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHC--CHHHHHHHHH
Q ss_conf 999999999999999999999999999999999951-9989999999637--9899999997
Q gi|254780375|r 78 RVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK-MDSDSAALQLEQI--DPDISSHILM 136 (175)
Q Consensus 78 r~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~-M~p~~AA~il~~m--~~d~aa~iL~ 136 (175)
..++...+-+.+++++-++-=+....++.+++.|++ +.|.+.|.+...= |++.-..+|.
T Consensus 12 ~~~~~~~RvkAle~lLieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~ 73 (203)
T d1ugpa_ 12 IQKEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLA 73 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 23239999999999999859999999999999987435974237899988379999999997
No 10
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=31.04 E-value=12 Score=14.20 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999
Q gi|254780375|r 66 KVLEDLQKDIEQRVILLENHKKEYNLWFQK 95 (175)
Q Consensus 66 ~eL~~le~~l~~r~~eLe~~~~ei~~~l~~ 95 (175)
..+...-.+|++++++|+.++.++..|...
T Consensus 42 ~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~ 71 (94)
T d1q08a_ 42 GIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999973
No 11
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=30.27 E-value=13 Score=14.12 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHC--CHHHHHHHHH
Q ss_conf 99999999999999999999999999999999951-9989999999637--9899999997
Q gi|254780375|r 79 VILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKK-MDSDSAALQLEQI--DPDISSHILM 136 (175)
Q Consensus 79 ~~eLe~~~~ei~~~l~~~~~~~~~~~~~lv~iy~~-M~p~~AA~il~~m--~~d~aa~iL~ 136 (175)
....+.+...++.++-++--+....++.+++.|++ +.|.+.|.+...= |++....+|.
T Consensus 12 ~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~ 72 (203)
T d1v29a_ 12 QSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLE 72 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 6569999999999999869999899999999997634983178999988369999999998
No 12
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.57 E-value=14 Score=13.82 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 999999999999999519989999999637989999999729
Q gi|254780375|r 97 DSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRL 138 (175)
Q Consensus 97 ~~~~~~~~~~lv~iy~~M~p~~AA~il~~m~~d~aa~iL~~m 138 (175)
+.+...++..+.+.|.+++=+.-|..|. ++.+.+=.++.+|
T Consensus 14 ~~i~Ehni~~is~~Y~~Isl~~la~~l~-l~~~evE~~l~~m 54 (84)
T d1ufma_ 14 RAVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQM 54 (84)
T ss_dssp HHHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCEEEHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf 9999998999988302566999999978-7999999999999
No 13
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.40 E-value=16 Score=13.57 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999
Q gi|254780375|r 66 KVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSF 99 (175)
Q Consensus 66 ~eL~~le~~l~~r~~eLe~~~~ei~~~l~~~~~~ 99 (175)
++...++.+...++..++++++.+..++.+...+
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~LqeLi~Q~iaf 35 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQLQELILQQIAF 35 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0589999999999999999999999999999999
Done!