RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780375|ref|YP_003064788.1| hypothetical protein
CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62]
         (175 letters)



>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 29.8 bits (67), Expect = 0.12
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 78  RVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMR 137
            V  L+         F   D FI  Y  N+    + M  DS  L     DP++    ++ 
Sbjct: 47  AVTELDGKPVSD---FDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVP 103

Query: 138 L----SPRQSSLIMSKMNPKSATM 157
           L    +P +   ++S MN     M
Sbjct: 104 LTTAMTPAKIVEVVSHMNVVEMMM 127


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 26.5 bits (58), Expect = 1.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 14/64 (21%)

Query: 98  SFIMSYNKNILDIYKKMDSDSAALQLEQIDPDISSHILMRLSPRQSSLIMSKMNPKSATM 157
           +FI+SY K+I D +  ++ DSA       +P ++ H +         +I S +N   A M
Sbjct: 43  TFIVSYAKDIYDKFMCIEHDSA------YEPSLTMHRV--------RVIYSMLNDYCAKM 88

Query: 158 ITNV 161
           I+ V
Sbjct: 89  ISEV 92


>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 665

 Score = 25.1 bits (54), Expect = 3.2
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 64  QKKVLEDLQKDIEQRVILL-ENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSDSA 119
            ++ LE   K  ++  + L E+ + E     ++     + +NKN+ +    +    A
Sbjct: 126 ARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNEDDTSLVFSKA 182


>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 654

 Score = 25.1 bits (54), Expect = 3.2
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 64  QKKVLEDLQKDIEQRVILL-ENHKKEYNLWFQKYDSFIMSYNKNILD 109
             + LE L K   +  + L    ++      +K     + +NKN+ +
Sbjct: 115 AARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNE 161


>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
           [TaxId: 2336]}
          Length = 404

 Score = 25.1 bits (54), Expect = 4.0
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 59  RDYLSQKKVLEDLQKDIEQRVILLENHKKE----------YNLWFQKYDSFIMSYNKNIL 108
                Q+K    ++K IE     +E  KKE          Y   F+K  +   SY+ NIL
Sbjct: 66  SSRDLQEKYERHMEKLIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNIL 125

Query: 109 DIYKKM 114
           + +KK 
Sbjct: 126 EGFKKY 131


>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
           {Garden pea (Pisum sativum) [TaxId: 3888]}
          Length = 257

 Score = 24.4 bits (52), Expect = 6.0
 Identities = 14/70 (20%), Positives = 24/70 (34%)

Query: 58  ERDYLSQKKVLEDLQKDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKNILDIYKKMDSD 117
             D L  K + +   K I  + I+   H +        YD F    ++ +L + +   S 
Sbjct: 129 NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASL 188

Query: 118 SAALQLEQID 127
               Q   I 
Sbjct: 189 KKDAQASDIP 198


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 629,919
Number of extensions: 28065
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 14
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)