HHsearch alignment for GI: 254780376 and conserved domain: COG1706
>COG1706 FlgI Flagellar basal-body P-ring protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=918.84 Aligned_cols=362 Identities=55% Similarity=0.832 Sum_probs=343.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67899999999997425700100100013640001430267878876388999887746899999999998297457321
Q gi|254780376|r 2 IFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRSLLQNLGISTPGGR 81 (369)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~a~rikDi~~i~GvR~NqL~GyGLVVGL~GTGD~~~~~~~t~qsl~nml~~~Gv~~~~~~ 81 (369)
T Consensus 2 ~~~~~~-~~~~~l~~~~~~~~a~rIKDiasiqgvRdNqLiGYGLVVGL~GtGD~~~~spfT~QSi~nML~~~gI~v~~~~ 80 (365)
T COG1706 2 MLKLIT-LALLLLLTTAKAAQAERIKDIASIQGVRDNQLIGYGLVVGLDGTGDQLTQSPFTKQSINNMLEQLGIKVPPGD 80 (365)
T ss_pred CEEHHH-HHHHHHHHHCCHHHHHHHHCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 220489-9999998733056554330110450234562577779996156677655786539999999998697579998
Q ss_pred -CCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCCCC
Q ss_conf -4655326999999717877568768999956888454447779995214778618999816168334324567652004
Q gi|254780376|r 82 -LGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFME 160 (369)
Q Consensus 82 -~~~kNvAaVmVtA~lPpfa~~G~~iDv~VSSiGdAkSL~GG~LL~TpL~g~dg~vyAvAQG~i~vgg~~~~g~~~~~~~ 160 (369)
T Consensus 81 n~~sKNvAAVmVTA~LPpfa~~G~kiDv~VSSiGdAKSL~GGtLLmTpLkG~DGqiYAvAQG~vivgg~~a~g~~s~~~~ 160 (365)
T COG1706 81 NIKSKNVAAVMVTASLPPFARQGSKIDVTVSSIGDAKSLRGGTLLMTPLKGADGQIYAVAQGNVIVGGFSAAGGGSSVTV 160 (365)
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCEEC
T ss_conf 74400368999974689767899757899953555433569668861046888738999734587656445676642002
Q ss_pred CCCCCEEEECCEEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCHHH
Q ss_conf 76542174165488741354324776499995078878999999999875202456541245115636863288752121
Q gi|254780376|r 161 GISTGGKIVNGAIVERELPKKFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR 240 (369)
Q Consensus 161 n~~t~GrIp~Ga~VErev~~~f~~~~~l~L~L~~pdfttA~~ia~aIN~~~~~~~g~~~A~a~d~~~I~v~~P~~~~~v~ 240 (369)
T Consensus 161 ~~~t~Gri~nGAiIERevp~~f~~~~~~~l~L~~pdFttA~riad~iN~----~fg~~~A~aids~ti~v~~P~~~s~v~ 236 (365)
T COG1706 161 NVPTSGRIPNGAIIEREVPSNFGDGNTLNLQLKNPDFTTAQRIADAINR----VFGKGIATAIDSRTIQVRVPKGASRVR 236 (365)
T ss_pred CCCCCEECCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH----HHCCCCCCCCCCCCEEEECCCCCCHHH
T ss_conf 6644136058726873078776778559999679981789999999986----526343433477726885688863778
Q ss_pred HHHHHHCCCCCCCCCCEEEEECCCCEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCEEEECCC
Q ss_conf 32232201268789835999447634994597399899984170799963776665776545687344236641456046
Q gi|254780376|r 241 LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDN 320 (369)
Q Consensus 241 fla~ie~l~V~~~~~akVVINerTGTIV~g~~V~I~pvaVsHGnLtI~I~~~~~vsqp~~~~~~g~t~~~~~t~i~v~e~ 320 (369)
T Consensus 237 fla~ieni~I~~~~~aKVVIn~RTGtIV~g~~V~i~~~avs~g~ltv~I~e~p~v~qp~pf-~~gqt~v~p~t~I~v~~~ 315 (365)
T COG1706 237 FLAEIENIEIETDTPAKVVINERTGTIVIGEDVKISPVAVSHGNLTVTITEQPNVSQPAPF-SGGQTVVVPKTTIEVNQE 315 (365)
T ss_pred HHHHHHCCCCCCCCCCEEEEECCCCEEEECCCEEEEEEEEEECCEEEEEEECCCCCCCCCC-CCCCEEECCCCEEEEECC
T ss_conf 9988627521489986499957845699788548867889707678999816655788877-788334246760377437
Q ss_pred CCE-EEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 735-8973898899999999847998789999999998716856258969
Q gi|254780376|r 321 KGS-FSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAGALQSEIIIQ 369 (369)
Q Consensus 321 ~~~-~~~~~~~tl~~lV~ALN~lG~tp~DlIsILqalk~aGAL~AELiI~ 369 (369)
T Consensus 316 ~~~~~~~~~~~tl~~lV~aLn~iGa~P~diiaILQalk~AGal~A~L~i~ 365 (365)
T COG1706 316 KGKLFILKGGTTLNNLVRALNAIGATPQDIIAILQALKSAGALQAELEII 365 (365)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEC
T ss_conf 87378517888689999999984589789999999998758344344769