HHsearch alignment for GI: 254780376 and conserved domain: PRK12706
>PRK12706 flgI flagellar basal body P-ring protein; Provisional.
Probab=100.00 E-value=0 Score=733.89 Aligned_cols=310 Identities=27% Similarity=0.424 Sum_probs=261.2
Q ss_pred CHHHHHHHHHHHHHHHCC----------------CCHHHHHHEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 967899999999997425----------------7001001000136400014302678788763889998877468999
Q gi|254780376|r 1 MIFRIAFLIFSLIGLHEI----------------SAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQ 64 (369)
Q Consensus 1 m~~~~~~l~~~~~~~~~~----------------~~~~a~rikDi~~i~GvR~NqL~GyGLVVGL~GTGD~~~~~~~t~q 64 (369)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVRIKDia~v~GvR~NQLiGYGLVVGL~GTGD~~~----~~~ 76 (328)
T PRK12706 1 MMKKLIMLIILNLSLFAQENQASKNFKNENSFNNQISESVKLKNIAEICPTNSNFLTGIGIVAGLADKGDSLK----QKD 76 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCC----CHH
T ss_conf 9137688999851366552532323101211233255244551123340221264378889980488787765----369
Q ss_pred HHHHHHHHCCCC-CCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECC
Q ss_conf 999999982974-5732146553269999997178775687689999568884544477799952147786189998161
Q gi|254780376|r 65 SMRSLLQNLGIS-TPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQGS 143 (369)
Q Consensus 65 sl~nml~~~Gv~-~~~~~~~~kNvAaVmVtA~lPpfa~~G~~iDv~VSSiGdAkSL~GG~LL~TpL~g~dg~vyAvAQG~ 143 (369)
T Consensus 77 sl~nmL~~~GV~~~~~~~~~~kNvAAVmVTA~LPpFAk~Gq~iDVtVSSiGDAkSL~GGtLLmTPLkGaDG~VYAvAQG~ 156 (328)
T PRK12706 77 ILNKILNEIGINEIDLTNIGSKNIALVNVSLQINGNMIKGSKHNVYIASMLDSKDLTNGILLKTELKDKEGKILATASGP 156 (328)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECC
T ss_conf 99999997599878866777533699999725787668997067999746575567897788742368998689998557
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 68334324567652004765421741654887413543247764999950788789999999998752024565412451
Q gi|254780376|r 144 VVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAY 223 (369)
Q Consensus 144 i~vgg~~~~g~~~~~~~n~~t~GrIp~Ga~VErev~~~f~~~~~l~L~L~~pdfttA~~ia~aIN~~~~~~~g~~~A~a~ 223 (369)
T Consensus 157 l~vgg~~------------~g~G~I~nGA~VEr~~~~~-----~~~l~L~~pDFtTA~ria~ain~~----~~~~~~~~- 214 (328)
T PRK12706 157 IITNNKS------------KGTGYILNGATIHENQNYT-----HYNIILKKGDYTLINRISKILTSK----NIKNNIKS- 214 (328)
T ss_pred EEECCCC------------CCCCCCCCCCEEEEECCCC-----EEEEEECCCCCHHHHHHHHHHHHH----HHCCCCCC-
T ss_conf 8867846------------6653626875677506886-----068996699916999999998531----00001468-
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCC
Q ss_conf 15636863288752121322322012687898359994476349945973998999841707999637766657765456
Q gi|254780376|r 224 DSRTVKVSKPTNIDLTRLMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNAFSS 303 (369)
Q Consensus 224 d~~~I~v~~P~~~~~v~fla~ie~l~V~~~~~akVVINerTGTIV~g~~V~I~pvaVsHGnLtI~I~~~~~vsqp~~~~~ 303 (369)
T Consensus 215 -~~~v~v~~----~~v~fla~iEnl~V~--~~ArVVVNeRTGTIV~G~~VrI-------g~ltVsI~e~~----~~v~~~ 276 (328)
T PRK12706 215 -GNIIEIEV----KNIGLLEEIENIEIE--TMPKVLIDEQNKIILASTNAEI-------GPLTFSIERDD----QNLFNN 276 (328)
T ss_pred -CCCEEEEC----CHHHHHHHHHCCCCC--CCCEEEEECCCCEEEECCCEEE-------ECEEEEEEECC----CCCCCC
T ss_conf -87268853----230598886377778--8984999799672998899599-------06699998579----630158
Q ss_pred CCCEEECCCCEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 873442366414560467358973898899999999847998789999999998716856258969
Q gi|254780376|r 304 NGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAGALQSEIIIQ 369 (369)
Q Consensus 304 ~g~t~~~~~t~i~v~e~~~~~~~~~~~tl~~lV~ALN~lG~tp~DlIsILqalk~aGAL~AELiI~ 369 (369)
T Consensus 277 ~~--------~~~~------~v~~~~~~l~~~V~~-N~~G~sprDlIaILQAlK~AGAL~AELVVQ 327 (328)
T PRK12706 277 KN--------NKTI------KIQIQKMKLNEFISK-NSNNLSNKELIQIIKAAKKINKLNGELILE 327 (328)
T ss_pred CC--------CEEE------EEECCCCCHHHHEEC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 98--------5479------996266656650003-658998689999999998738641699850