Query gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 369
No_of_seqs 122 out of 669
Neff 4.9
Searched_HMMs 33803
Date Wed Jun 1 12:36:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780376.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3hrz_B Cobra venom factor; se 61.1 6.4 0.00019 19.1 2.6 22 90-111 2-23 (172)
2 >3idw_A Actin cytoskeleton-reg 57.6 12 0.00034 17.3 3.4 23 337-359 42-64 (72)
3 >2pn5_A TEP1R, thioester-conta 53.9 13 0.00039 17.0 3.2 23 90-112 2-24 (110)
4 >3cu7_A Complement C5; Mg doma 48.7 17 0.0005 16.2 3.2 22 90-111 2-23 (111)
5 >1uxy_A MURB, uridine diphosph 46.9 18 0.00054 16.0 3.9 30 317-346 6-35 (124)
6 >2icn_B Prolactin-inducible pr 46.5 6.8 0.0002 18.9 0.8 23 89-111 7-29 (118)
7 >2hr0_B Complement C3 alpha' c 43.1 15 0.00044 16.6 2.1 32 90-121 2-35 (133)
8 >2b39_A C3; thioester, immune 42.6 21 0.00062 15.6 3.5 35 90-124 2-38 (128)
9 >3i99_A UDP-N-acetylenolpyruvo 38.6 24 0.00071 15.1 4.1 34 315-348 4-37 (124)
10 >1wvf_A 4-cresol dehydrogenase 37.7 25 0.00073 15.1 4.5 31 314-344 3-33 (129)
11 >3js8_A Cholesterol oxidase; c 32.2 30 0.00089 14.5 3.9 30 315-344 6-35 (129)
12 >1ngr_A P75 low affinity neuro 31.1 31 0.00093 14.3 3.8 26 327-354 58-83 (85)
13 >3gmg_A Uncharacterized protei 30.5 32 0.00095 14.3 2.8 34 39-74 32-65 (170)
14 >1eh2_A EPS15; calcium binding 30.2 32 0.00096 14.2 3.5 31 330-360 31-61 (106)
15 >2ics_A Adenine deaminase; TIM 29.2 25 0.00074 15.0 1.4 16 96-111 52-67 (112)
16 >2fhz_B Colicin-E5; protein-pr 28.1 32 0.00096 14.3 1.8 13 256-268 72-84 (108)
17 >2ksc_A Cyanoglobin; hemeprote 27.6 36 0.0011 13.9 4.0 27 331-357 29-55 (66)
18 >2yvs_A Glycolate oxidase subu 27.2 37 0.0011 13.9 3.5 27 317-343 3-29 (114)
19 >2gm2_A Conserved hypothetical 26.7 25 0.00075 15.0 1.0 39 51-92 71-121 (132)
20 >3cpk_A Uncharacterized protei 26.3 26 0.00076 15.0 1.0 25 51-78 95-119 (150)
21 >2r44_A Uncharacterized protei 25.6 39 0.0012 13.7 2.8 32 334-365 25-56 (105)
22 >2pjh_A Protein NPL4, nuclear 23.3 3.4 0.0001 21.0 -3.9 61 226-286 14-75 (80)
23 >2fvt_A Conserved hypothetical 23.1 31 0.0009 14.4 0.9 25 51-78 74-98 (135)
24 >1e8g_A Vanillyl-alcohol oxida 23.1 43 0.0013 13.4 4.5 28 316-343 6-33 (147)
25 >2i8g_A Hypothetical protein D 22.6 44 0.0013 13.3 2.1 15 132-146 112-126 (151)
26 >2qpt_A EH domain-containing p 21.8 46 0.0014 13.2 3.6 31 330-360 42-72 (118)
27 >1twf_B DNA-directed RNA polym 21.5 46 0.0014 13.2 2.5 24 345-368 43-66 (80)
28 >2fi9_A Outer membrane protein 21.3 42 0.0012 13.5 1.3 16 267-282 26-41 (128)
29 >1s6i_A CDPK, calcium-dependen 20.9 43 0.0013 13.4 1.3 32 330-361 11-42 (100)
30 >2e39_A Peroxidase; heme prote 20.3 49 0.0014 13.0 3.1 27 329-355 7-33 (136)
No 1
>>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B* (B:81-252)
Probab=61.10 E-value=6.4 Score=19.10 Aligned_cols=22 Identities=5% Similarity=0.221 Sum_probs=19.4
Q ss_pred EEEEEEECCCCCCCCEEEEEEE
Q ss_conf 9999971787756876899995
Q gi|254780376|r 90 VMVTANLPPFASPGSRIDVSIN 111 (369)
Q Consensus 90 VmVtA~lPpfa~~G~~iDv~VS 111 (369)
.||+.+||.|.++|+++.+.|.
T Consensus 2 F~i~~~lP~~v~~GD~~~i~v~ 23 (172)
T 3hrz_B 2 FFIDLQMPYSVVKNEQVEIRAI 23 (172)
T ss_dssp EEEEECCCSCEETTCCEEEEEE
T ss_pred EEEEECCCCEEECCCEEEEEEE
T ss_conf 7999358968976989999999
No 2
>>3idw_A Actin cytoskeleton-regulatory complex protein SLA1; clathrin adaptor, endocytosis, SAM domain, yeast, actin- binding, cell membrane; 1.85A {Saccharomyces cerevisiae} (A:)
Probab=57.56 E-value=12 Score=17.33 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=19.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99984799878999999999871
Q gi|254780376|r 337 SGMNSIGLKTDGIISILQGIKAA 359 (369)
Q Consensus 337 ~ALN~lG~tp~DlIsILqalk~a 359 (369)
+-|..||.+.-|+|+|++.+|.-
T Consensus 42 ~~Lr~LGi~eGDII~Vlk~~~~~ 64 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99998498266799999999998
No 3
>>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} (A:665-774)
Probab=53.88 E-value=13 Score=16.98 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.6
Q ss_pred EEEEEEECCCCCCCCEEEEEEEC
Q ss_conf 99999717877568768999956
Q gi|254780376|r 90 VMVTANLPPFASPGSRIDVSINS 112 (369)
Q Consensus 90 VmVtA~lPpfa~~G~~iDv~VSS 112 (369)
.||+-+||.|.++|+++.+.++=
T Consensus 2 f~v~~~lP~~v~~geq~~i~~~V 24 (110)
T 2pn5_A 2 FYIVENLPYSIKRGEAVVLQFTL 24 (110)
T ss_dssp EEEEEECCSEEETTCEEEEEEEE
T ss_pred EEEECCCCCEECCCCEEEEEEEE
T ss_conf 79963689751489889999999
No 4
>>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 1xwe_A (A:822-932)
Probab=48.71 E-value=17 Score=16.18 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEEEECCCCCCCCEEEEEEE
Q ss_conf 9999971787756876899995
Q gi|254780376|r 90 VMVTANLPPFASPGSRIDVSIN 111 (369)
Q Consensus 90 VmVtA~lPpfa~~G~~iDv~VS 111 (369)
+||..+||.|.++|+++.+.+.
T Consensus 2 ffv~~~lP~sv~~gE~~~i~~~ 23 (111)
T 3cu7_A 2 VFLEMNIPYSVVRGEQIQLKGT 23 (111)
T ss_dssp EEEEEECCSCEETTCCEEEEEE
T ss_pred EEEEECCCCEEECCCEEEEEEE
T ss_conf 8997048843206977999999
No 5
>>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:67-190)
Probab=46.87 E-value=18 Score=15.99 Aligned_cols=30 Identities=7% Similarity=-0.013 Sum_probs=12.2
Q ss_pred ECCCCCEEEECCCCCHHHHHHHHHHCCCCH
Q ss_conf 604673589738988999999998479987
Q gi|254780376|r 317 VSDNKGSFSLIDAPDLNSLISGMNSIGLKT 346 (369)
Q Consensus 317 v~e~~~~~~~~~~~tl~~lV~ALN~lG~tp 346 (369)
+++++..+....|+++.+|.++|.+-|..+
T Consensus 6 id~~~~~v~ve~Gv~~~~l~~~l~~~Gl~~ 35 (124)
T 1uxy_A 6 DEPDAWYLHVGAGENWHRLVKYTLQEGMPG 35 (124)
T ss_dssp ECSSEEEEEEETTSBHHHHHHHHHHTTCCS
T ss_pred ECCCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 315420145321464799999998763144
No 6
>>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B* (B:)
Probab=46.50 E-value=6.8 Score=18.90 Aligned_cols=23 Identities=9% Similarity=0.349 Sum_probs=19.6
Q ss_pred EEEEEEEECCCCCCCCEEEEEEE
Q ss_conf 99999971787756876899995
Q gi|254780376|r 89 AVMVTANLPPFASPGSRIDVSIN 111 (369)
Q Consensus 89 aVmVtA~lPpfa~~G~~iDv~VS 111 (369)
-+|+...||.|.++|+++.+.+.
T Consensus 7 p~~i~~~lP~~~~~gd~~~i~v~ 29 (118)
T 2icn_B 7 IIIKNFDIPKSVRPNDEVTAVLA 29 (118)
T ss_dssp CSEECCCCCSEECSSCCEEEEEE
T ss_pred EEEEECCCCCEEECCCEEEEEEE
T ss_conf 48998779946864988999999
No 7
>>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 2a73_B* 2i07_B* 2a74_C* 2ice_C* 2qki_C* 2ice_B* 2a74_B* 2qki_B* (B:80-189,B:751-773)
Probab=43.14 E-value=15 Score=16.60 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=22.9
Q ss_pred EEEEEEECCCCCCCCEEEEEE--ECCCCCCCCCC
Q ss_conf 999997178775687689999--56888454447
Q gi|254780376|r 90 VMVTANLPPFASPGSRIDVSI--NSLGDASSLRG 121 (369)
Q Consensus 90 VmVtA~lPpfa~~G~~iDv~V--SSiGdAkSL~G 121 (369)
+||+-+||-|.++|+++.+.+ ..-.+.++++.
T Consensus 2 ffV~l~LPysv~rGEqi~i~vtVfNy~~~~~~~v 35 (133)
T 2hr0_B 2 FFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKV 35 (133)
T ss_dssp SEEEEECCSEEETTCCEEEEEEEEECCSSCCEEE
T ss_pred EEEEECCCCEEECCCEEEEEEEEEECCCCCCEEE
T ss_conf 8997058976634989999999996899962899
No 8
>>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} (A:827-933,A:1499-1519)
Probab=42.63 E-value=21 Score=15.56 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=25.0
Q ss_pred EEEEEEECCCCCCCCEEEE--EEECCCCCCCCCCCEE
Q ss_conf 9999971787756876899--9956888454447779
Q gi|254780376|r 90 VMVTANLPPFASPGSRIDV--SINSLGDASSLRGGIL 124 (369)
Q Consensus 90 VmVtA~lPpfa~~G~~iDv--~VSSiGdAkSL~GG~L 124 (369)
++|+.+||-+.++|+++.+ +|-...+...++-=.-
T Consensus 2 ffv~l~LPysv~rGEqi~I~vtVfNy~~~~~~~V~V~ 38 (128)
T 2b39_A 2 FFIDLRLPYSVVRNEQVEIRAILYNYREAENLKVRVE 38 (128)
T ss_dssp EEEEEECCSCEESSCEEEEEEEEEECCTTCCEEEEEE
T ss_pred EEEEECCCCEECCCCEEEEEEEEEECCCCCCEEEEEE
T ss_conf 8998303417716989999999991677765189999
No 9
>>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:83-206)
Probab=38.55 E-value=24 Score=15.14 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=17.9
Q ss_pred EEECCCCCEEEECCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 4560467358973898899999999847998789
Q gi|254780376|r 315 LKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDG 348 (369)
Q Consensus 315 i~v~e~~~~~~~~~~~tl~~lV~ALN~lG~tp~D 348 (369)
++++++...+....|+++.+|.++|.+-|..+.+
T Consensus 4 i~id~~~~~v~veaGv~~~~l~~~l~~~gl~~~~ 37 (124)
T 3i99_A 4 HQQDDDYHRLHVAGGEDWPSLVSWCVEQGIGGLE 37 (124)
T ss_dssp EEECSSEEEEEEETTSBHHHHHHHHHHTTCTTCG
T ss_pred EEECCCCCEEEEEECCCHHHHHHHHHHHHCCCHH
T ss_conf 4311366347997226518999999877325515
No 10
>>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:113-241)
Probab=37.74 E-value=25 Score=15.05 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=18.2
Q ss_pred EEEECCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 1456046735897389889999999984799
Q gi|254780376|r 314 DLKVSDNKGSFSLIDAPDLNSLISGMNSIGL 344 (369)
Q Consensus 314 ~i~v~e~~~~~~~~~~~tl~~lV~ALN~lG~ 344 (369)
.++++++...+.+..|+++.+|.++|++-|.
T Consensus 3 ii~id~~~~~v~v~~Gv~~~~l~~~l~~~gl 33 (129)
T 1wvf_A 3 IIKIDPEMCYALVEPGVTFGQMYDYIQENNL 33 (129)
T ss_dssp EEEEETTTTEEEECTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCCCCEEEECHHHHHHHHHHHHHHCCC
T ss_conf 7435876664774300104665434442146
No 11
>>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:88-216)
Probab=32.22 E-value=30 Score=14.47 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=21.4
Q ss_pred EEECCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 456046735897389889999999984799
Q gi|254780376|r 315 LKVSDNKGSFSLIDAPDLNSLISGMNSIGL 344 (369)
Q Consensus 315 i~v~e~~~~~~~~~~~tl~~lV~ALN~lG~ 344 (369)
++++++...+.+..|+++.||.++|.+-|.
T Consensus 6 i~id~~~~~v~v~aG~~~~~l~~~L~~~G~ 35 (129)
T 3js8_A 6 IDASGPVAKVTAQAGITMEALLTGLEKAGL 35 (129)
T ss_dssp EECSSSSEEEEEETTSBHHHHHHHHHHTTE
T ss_pred ECCCCCEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 716679179998999899999999998288
No 12
>>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} (A:)
Probab=31.08 E-value=31 Score=14.34 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 3898899999999847998789999999
Q gi|254780376|r 327 IDAPDLNSLISGMNSIGLKTDGIISILQ 354 (369)
Q Consensus 327 ~~~~tl~~lV~ALN~lG~tp~DlIsILq 354 (369)
.+++|+++|+++|..+|- .|++.++|
T Consensus 58 ~~~~ti~~L~~~L~~~~r--~d~~~~i~ 83 (85)
T 1ngr_A 58 QDSATLDALLAALRRIQR--ADIVESLC 83 (85)
T ss_dssp STTCBHHHHHHHHHHTTC--HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCC--HHHHHHHH
T ss_conf 379739999999999581--99999986
No 13
>>3gmg_A Uncharacterized protein RV1825/MT1873; structural genomics, unknown function, cell membrane, membrane, transmembrane, PSI-2; 1.50A {Mycobacterium tuberculosis} (A:)
Probab=30.51 E-value=32 Score=14.28 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=20.7
Q ss_pred CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 026787887638899988774689999999999829
Q gi|254780376|r 39 QLIGYGLVVGLQGTGDSLRSSPFTEQSMRSLLQNLG 74 (369)
Q Consensus 39 qL~GyGLVVGL~GTGD~~~~~~~t~qsl~nml~~~G 74 (369)
...|=|+++-|+...... ...-.+.+.|-|..-|
T Consensus 32 ~V~GpGi~Iti~D~~~~v--~~~dl~~vVNeL~~aG 65 (170)
T 3gmg_A 32 GATGPGVMITIDDPGPGV--APEVMIDVINELRAAG 65 (170)
T ss_dssp CEEEEEEEEEEECSSCCC--CHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCC--CHHHHHHHHHHHHHCC
T ss_conf 789881899993899888--9999999999998679
No 14
>>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} (A:)
Probab=30.22 E-value=32 Score=14.24 Aligned_cols=31 Identities=6% Similarity=-0.123 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 8899999999847998789999999998716
Q gi|254780376|r 330 PDLNSLISGMNSIGLKTDGIISILQGIKAAG 360 (369)
Q Consensus 330 ~tl~~lV~ALN~lG~tp~DlIsILqalk~aG 360 (369)
.+..++.++|.++|.++..+-.|++.++.-|
T Consensus 31 I~~~el~~~l~~lg~~~~~~~~i~~~~D~d~ 61 (106)
T 1eh2_A 31 LSGDKVKPVLLNSKLPVDILGRVWELSDIDH 61 (106)
T ss_dssp CBHHHHHHHHHTTTCCHHHHHHHHHHHCSSC
T ss_pred EEHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 8199999999864898999999999838999
No 15
>>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} (A:1-55,A:323-379)
Probab=29.22 E-value=25 Score=15.01 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=8.1
Q ss_pred ECCCCCCCCEEEEEEE
Q ss_conf 1787756876899995
Q gi|254780376|r 96 LPPFASPGSRIDVSIN 111 (369)
Q Consensus 96 lPpfa~~G~~iDv~VS 111 (369)
+|.|-++|..=|+|+=
T Consensus 52 ~PG~L~~G~~AD~tiF 67 (112)
T 2ics_A 52 VSAGLEIGKDADLTIF 67 (112)
T ss_dssp EEECCCTTSBCCEEEE
T ss_pred EECCCCCCCCCCEEEE
T ss_conf 9779799898789999
No 16
>>2fhz_B Colicin-E5; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} (B:)
Probab=28.12 E-value=32 Score=14.25 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=11.3
Q ss_pred CEEEEECCCCEEE
Q ss_conf 3599944763499
Q gi|254780376|r 256 ARVIINERTGTIV 268 (369)
Q Consensus 256 akVVINerTGTIV 268 (369)
.-||||.|||-||
T Consensus 72 ~YVvVndrTgEvv 84 (108)
T 2fhz_B 72 KYVVVNDRTGEVT 84 (108)
T ss_dssp EEEEEETTTCBEE
T ss_pred CEEEEECCCCCEE
T ss_conf 8898846865268
No 17
>>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP} (A:58-123)
Probab=27.60 E-value=36 Score=13.94 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 899999999847998789999999998
Q gi|254780376|r 331 DLNSLISGMNSIGLKTDGIISILQGIK 357 (369)
Q Consensus 331 tl~~lV~ALN~lG~tp~DlIsILqalk 357 (369)
-+.+|..||+.+|+++..+=.++..+.
T Consensus 29 ~~~~l~~aL~~~gv~~~~~~evl~~l~ 55 (66)
T 2ksc_A 29 IAENLVLTLQELNVSQDLIDEVVTIVG 55 (66)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999984999999999999998
No 18
>>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus HB8} (A:1-114)
Probab=27.18 E-value=37 Score=13.89 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=10.6
Q ss_pred ECCCCCEEEECCCCCHHHHHHHHHHCC
Q ss_conf 604673589738988999999998479
Q gi|254780376|r 317 VSDNKGSFSLIDAPDLNSLISGMNSIG 343 (369)
Q Consensus 317 v~e~~~~~~~~~~~tl~~lV~ALN~lG 343 (369)
++++++.+....|+++.||.++|.+-|
T Consensus 3 ~d~~~~~v~v~~Gv~~~~l~~~l~~~G 29 (114)
T 2yvs_A 3 VHAADQYLVAPGEADLLEVHARLAGTG 29 (114)
T ss_dssp EETTTTEEEEETTCCHHHHHHHHTTTT
T ss_pred ECCCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 765579899989986999999999779
No 19
>>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} (A:)
Probab=26.66 E-value=25 Score=15.00 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=21.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC------------CCCCEEEEEE
Q ss_conf 89998877468999999999982974573214------------6553269999
Q gi|254780376|r 51 GTGDSLRSSPFTEQSMRSLLQNLGISTPGGRL------------GSKNVAAVMV 92 (369)
Q Consensus 51 GTGD~~~~~~~t~qsl~nml~~~Gv~~~~~~~------------~~kNvAaVmV 92 (369)
|||.+.. |-.+.+.+.++++|+.+.--+. ..|+|||.++
T Consensus 71 GTG~~~~---~~~~~~~~~l~~~GI~vE~m~T~~AcrTyN~L~~EgR~VaAaLi 121 (132)
T 2gm2_A 71 GTGERQQ---FPSTDVLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMI 121 (132)
T ss_dssp ECTTSCC---CCCHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EECCCCC---CCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 4099778---79999999999779978992739999999998736752799992
No 20
>>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A (A:)
Probab=26.30 E-value=26 Score=14.95 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=13.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999887746899999999998297457
Q gi|254780376|r 51 GTGDSLRSSPFTEQSMRSLLQNLGISTP 78 (369)
Q Consensus 51 GTGD~~~~~~~t~qsl~nml~~~Gv~~~ 78 (369)
|||...+ |....+.+.|+++||.+.
T Consensus 95 GTG~~~~---~l~~~~~~~l~~~GI~vE 119 (150)
T 3cpk_A 95 GTGRRQH---LLGPEQVRPLLAXGVGVE 119 (150)
T ss_dssp ECTTSCC---CCCHHHHHHHHTTTCEEE
T ss_pred CCCCCCC---CCCHHHHHHHHHCCCEEE
T ss_conf 1598667---899999999997699899
No 21
>>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} (A:227-331)
Probab=25.56 E-value=39 Score=13.70 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 99999984799878999999999871685625
Q gi|254780376|r 334 SLISGMNSIGLKTDGIISILQGIKAAGALQSE 365 (369)
Q Consensus 334 ~lV~ALN~lG~tp~DlIsILqalk~aGAL~AE 365 (369)
+.+.-.=.+|++||-.++++++-|+--+|++.
T Consensus 25 ~~~~~~v~~G~spRa~l~l~~aAkA~A~l~GR 56 (105)
T 2r44_A 25 EAEASYILYGASTRAAINLNRVAKAXAFFNNR 56 (105)
T ss_dssp HHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 66654531158879999999999999997699
No 22
>>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} (A:)
Probab=23.26 E-value=3.4 Score=20.99 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=40.2
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCCCEEEEECCCCEEEECCCEEEEEEEEECCCEE
Q ss_conf 63686328875212132232-20126878983599944763499459739989998417079
Q gi|254780376|r 226 RTVKVSKPTNIDLTRLMSEV-EMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLT 286 (369)
Q Consensus 226 ~~I~v~~P~~~~~v~fla~i-e~l~V~~~~~akVVINerTGTIV~g~~V~I~pvaVsHGnLt 286 (369)
|+-+|.++++.....+...| |.+.++.+...--.=|..++.+....+..++.+-+.||.+-
T Consensus 14 G~~Ri~v~~~~t~~~L~~kI~~~l~~~~~~~~l~~~~~~~~~l~~~~~~tl~~lgLkHGd~l 75 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLL 75 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 87789708977199999999998699987617984489886344567879999298777889
No 23
>>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} (A:)
Probab=23.11 E-value=31 Score=14.43 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=13.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999887746899999999998297457
Q gi|254780376|r 51 GTGDSLRSSPFTEQSMRSLLQNLGISTP 78 (369)
Q Consensus 51 GTGD~~~~~~~t~qsl~nml~~~Gv~~~ 78 (369)
|||.... |....+...++++||.+.
T Consensus 74 GtG~~~~---~l~~~~~~~l~~~GI~vE 98 (135)
T 2fvt_A 74 GTGADVW---IAPRQLREALRGVNVVLD 98 (135)
T ss_dssp ECTTSCC---CCCHHHHHHHHTTTCEEE
T ss_pred ECCCCCC---CCCHHHHHHHHHCCCEEE
T ss_conf 5176556---899999999997698589
No 24
>>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:127-273)
Probab=23.06 E-value=43 Score=13.38 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=13.1
Q ss_pred EECCCCCEEEECCCCCHHHHHHHHHHCC
Q ss_conf 5604673589738988999999998479
Q gi|254780376|r 316 KVSDNKGSFSLIDAPDLNSLISGMNSIG 343 (369)
Q Consensus 316 ~v~e~~~~~~~~~~~tl~~lV~ALN~lG 343 (369)
+++++...+.++.|+++.||.++|.+-|
T Consensus 6 ~id~~~~~v~v~~Gv~~~~l~~~l~~~G 33 (147)
T 1e8g_A 6 EVNVEGAYCVVEPGVTYHDLHNYLEANN 33 (147)
T ss_dssp EEETTTTEEEECTTCBHHHHHHHHHHTT
T ss_pred EEECCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf 8837999999968825999999999848
No 25
>>2i8g_A Hypothetical protein DIP2269; structural genomics, APC82926, PSI-2, protein structure initiative; HET: MSE; 1.74A {Corynebacterium diphtheriae NCTC13129} (A:)
Probab=22.56 E-value=44 Score=13.32 Aligned_cols=15 Identities=47% Similarity=0.908 Sum_probs=8.3
Q ss_pred CCCCEEEEEECCEEE
Q ss_conf 786189998161683
Q gi|254780376|r 132 ADGNIYAVAQGSVVV 146 (369)
Q Consensus 132 ~dg~vyAvAQG~i~v 146 (369)
.||-|||++.|+..+
T Consensus 112 ~~gaVYAV~Kg~~AV 126 (151)
T 2i8g_A 112 EEGAVYAVQKGPVAV 126 (151)
T ss_dssp TTEEEEEEEETTEEE
T ss_pred CCCCEEEEEECCEEE
T ss_conf 884089998489089
No 26
>>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} (A:433-550)
Probab=21.76 E-value=46 Score=13.21 Aligned_cols=31 Identities=10% Similarity=-0.138 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 8899999999847998789999999998716
Q gi|254780376|r 330 PDLNSLISGMNSIGLKTDGIISILQGIKAAG 360 (369)
Q Consensus 330 ~tl~~lV~ALN~lG~tp~DlIsILqalk~aG 360 (369)
.+..+|..+|..+|.++.++=.|++.+..-+
T Consensus 42 Is~~el~~~l~~~~l~~~~~~~i~~~~D~d~ 72 (118)
T 2qpt_A 42 LSGSKAKTWMVGTKLPNSVLGRIWKLSDVDR 72 (118)
T ss_dssp ECHHHHHHHHHHTTCCHHHHHHHHHHHCSSC
T ss_pred ECHHHHHHHHHHCCCCHHHHHHHCHHHHCCC
T ss_conf 6389999999974998789976331865699
No 27
>>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:550-629)
Probab=21.50 E-value=46 Score=13.18 Aligned_cols=24 Identities=13% Similarity=0.432 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 878999999999871685625896
Q gi|254780376|r 345 KTDGIISILQGIKAAGALQSEIII 368 (369)
Q Consensus 345 tp~DlIsILqalk~aGAL~AELiI 368 (369)
-|+.++.-|+.|+++|.++.|+-|
T Consensus 43 ~p~~lv~~lR~lRR~g~i~~~VsI 66 (80)
T 1twf_B 43 NPARLMETLRTLRRKGDINPEVSM 66 (80)
T ss_dssp CHHHHHHHHHHHHHHTSSCTTCEE
T ss_pred CCCEEEEEEEEEEECCCCCCEEEE
T ss_conf 552432102233542765751334
No 28
>>2fi9_A Outer membrane protein; PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae str} (A:)
Probab=21.33 E-value=42 Score=13.46 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=5.2
Q ss_pred EEECCCEEEEEEEEEC
Q ss_conf 9945973998999841
Q gi|254780376|r 267 IVIGDNVRISKVVVSY 282 (369)
Q Consensus 267 IV~g~~V~I~pvaVsH 282 (369)
+.+++..-..++.+..
T Consensus 26 ~~ing~~~~~siii~p 41 (128)
T 2fi9_A 26 FRFADMSHRGSIICIP 41 (128)
T ss_dssp EEETTEEEESEEEEET
T ss_pred EEECCEEEECCEEECC
T ss_conf 9999999871799805
No 29
>>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} (A:89-188)
Probab=20.86 E-value=43 Score=13.44 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88999999998479987899999999987168
Q gi|254780376|r 330 PDLNSLISGMNSIGLKTDGIISILQGIKAAGA 361 (369)
Q Consensus 330 ~tl~~lV~ALN~lG~tp~DlIsILqalk~aGA 361 (369)
.+..|+.++|.++|.+|.+.-.+++.+..-+.
T Consensus 11 Is~~E~~~~l~~lg~~~~~~~~~~~~~d~~~~ 42 (100)
T 1s6i_A 11 ITLDEIQQACKDFGLDDIHIDDMIKEIDQDND 42 (100)
T ss_dssp EEHHHHHHTTTTTTCCTTHHHHHHHHHCSSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 51578888988763227789999998422989
No 30
>>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} (A:151-286)
Probab=20.33 E-value=49 Score=13.01 Aligned_cols=27 Identities=15% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 988999999998479987899999999
Q gi|254780376|r 329 APDLNSLISGMNSIGLKTDGIISILQG 355 (369)
Q Consensus 329 ~~tl~~lV~ALN~lG~tp~DlIsILqa 355 (369)
..++.++.+...+.|.+++||++.+-+
T Consensus 7 ~~~~~~l~~~F~~~Gl~~~e~VaL~Ga 33 (136)
T 2e39_A 7 GNTVTAILDRMGDAGFSPDEVVDLLAA 33 (136)
T ss_dssp TSCHHHHHHHHHHHTCCHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 477999999999707985887764403
Done!