RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (369 letters)



>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (C:359-648)
          Length = 290

 Score = 31.0 bits (70), Expect = 0.28
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 9/48 (18%)

Query: 127 TSLLGA---------DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
            +LLG          DGN+  + +    V   F         EG++TG
Sbjct: 78  KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 125


>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (D:363-647)
          Length = 285

 Score = 31.0 bits (70), Expect = 0.29
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 9/48 (18%)

Query: 127 TSLLGA---------DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
            +LLG          DGN+  + +    V   F         EG++TG
Sbjct: 74  KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 121


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (B:423-484)
          Length = 62

 Score = 27.2 bits (60), Expect = 3.8
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
           DGN+  + +    V   F         EG++TG
Sbjct: 29  DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 61


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (A:423-484)
          Length = 62

 Score = 27.2 bits (60), Expect = 3.8
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
           DGN+  + +    V   F         EG++TG
Sbjct: 29  DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 61


>2gtt_A Nucleoprotein; protein-RNA complex, viral protein, RNA
           binding protein; 3.49A {Rabies virus}
           (A:43-75,A:116-226)
          Length = 144

 Score = 27.3 bits (60), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 329 APDLN----SLISGMNSIGLKTDGIISIL 353
           APDLN    S++SGM++  L  D + S L
Sbjct: 4   APDLNKAYKSVLSGMSAAKLDPDDVCSYL 32


>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition,
           base flipping, bacterial virulence factor,
           transferase/DNA complex; HET: DNA SAH; 1.89A
           {Escherichia coli} PDB: 2ore_D* (A:57-156)
          Length = 100

 Score = 26.7 bits (59), Expect = 5.3
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 176 RELPKKFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFS 216
           REL     + A++  Q R     +       +    LNR+ 
Sbjct: 22  RELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYG 62


>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase,
           structural genomics, NPPSFA; 3.60A {Methanocaldococcus
           jannaschii} (A:361-549)
          Length = 189

 Score = 26.3 bits (58), Expect = 6.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
           DGNIY +      V   ++     +  EG+ST 
Sbjct: 84  DGNIYGIPPTFEGVKEQYIPILKKAKEEGVSTN 116


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.133    0.355 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,425,295
Number of extensions: 102515
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 13
Length of query: 369
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 279
Effective length of database: 1,913,599
Effective search space: 533894121
Effective search space used: 533894121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)