RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] (369 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 56.1 bits (135), Expect = 1e-08 Identities = 77/522 (14%), Positives = 138/522 (26%), Gaps = 237/522 (45%) Query: 3 FRIAFL----IFSLIG-LHEISAQVVSRIKDVVS---------------------LQSGR 36 F +L I +L L + + + + K+++ ++ Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150 Query: 37 DNQLIGYGLVVGLQGTGDS----LRS-----SPFTE---QSMRSLLQNL----------- 73 + + G QG D LR + L L Sbjct: 151 EGNAQLV-AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209 Query: 74 --GI----------STPG-GRLGSKNVAAV-------------MVTA---NLPPFASPGS 104 G+ +TP L S + +VTA +PG Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLS---IPISCPLIGVIQLAHYVVTAKLLGF----TPG- 261 Query: 105 RIDVSINSLGDASSLRG------GILVMTSLLGADG--NIYAVAQGSVVVSGLF---VKG 153 ++ S L+G G++ ++ D + + + ++ V LF V+ Sbjct: 262 --EL-------RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV--LFFIGVRC 310 Query: 154 Q---------SSSFMEGISTGGKIVNG------AIVERELPKKFKDSADLILQLRN---P 195 S + + G +I L ++ + N P Sbjct: 311 YEAYPNTSLPPSILEDSLENN----EGVPSPMLSI--SNLTQEQVQD---YVNKTNSHLP 361 Query: 196 DFSTAIRIADQINS-------------YSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRL- 241 + I+ +N Y LN R K P+ +D +R+ Sbjct: 362 A-GKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLR-----------KAKAPSGLDQSRIP 408 Query: 242 MSE----VEM--LTVETD------TPARVIINERTGTIVIGDNVRIS----KVVVSY--- 282 SE L V + PA +IN+ ++ +NV + ++ V Y Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKD----LVKNNVSFNAKDIQIPV-YDTF 463 Query: 283 ---------GN----LTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDNKGSFSLID- 328 G+ + I V T K + ++D Sbjct: 464 DGSDLRVLSGSISERIVDCIIR-LPVKWETT------------TQFKAT------HILDF 504 Query: 329 ----APDLNSLISGMNSIGLKTDGIISILQGIK--AAGALQS 364 A L L N DG G++ AG L Sbjct: 505 GPGGASGLGVLTH-RN-----KDG-----TGVRVIVAGTLDI 535 Score = 39.9 bits (93), Expect = 0.001 Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 30/168 (17%) Query: 91 MVTANLPPFA-SPGS---RIDVSINSLGDASSLRGGILVMTSLLGA--DGNIYAVAQGSV 144 M + P S GS + V S AS L+ +L +G + Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN---KILPEPTEGFAADDEPTTP 57 Query: 145 VVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADLILQ------LRNPDFS 198 L F+ +S ++VE +F +L L L D Sbjct: 58 A--ELV-----GKFLGYVS--------SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102 Query: 199 TAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRLMSEVE 246 Q N +L + I +R + + L V Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 685 Score = 32.6 bits (74), Expect = 0.15 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 DGN+ + + V F EG++TG Sbjct: 451 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 665 Score = 32.2 bits (73), Expect = 0.20 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 DGN+ + + V F EG++TG Sbjct: 451 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 648 Score = 30.7 bits (69), Expect = 0.49 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 9/48 (18%) Query: 127 TSLLGA---------DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 +LLG DGN+ + + V F EG++TG Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.0 bits (66), Expect = 0.80 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%) Query: 175 ERELPKKFKDSADLILQLRNPDFSTAIRI 203 E++ KK + S L+L D + A+ I Sbjct: 18 EKQALKKLQAS----LKLYADDSAPALAI 42 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 29.8 bits (66), Expect = 1.1 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 22/92 (23%) Query: 276 SKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSL 335 +KVVV+ + Q+T+ Q + + + GST+ + V N+GS D+ +L Sbjct: 502 AKVVVTTSRFSKQVTDYYQSIYAK-YGAKGSTL------IVVPFNQGS-----KQDVEAL 549 Query: 336 ISGM------NSIGLKTDGIISIL----QGIK 357 I + +G D II QGI+ Sbjct: 550 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIE 581 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 701 Score = 28.8 bits (64), Expect = 2.0 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165 DGN+ + + V F EG++TG Sbjct: 451 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483 >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334 Score = 28.3 bits (62), Expect = 2.9 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 7/53 (13%) Query: 265 GTIVIGDNVRISKVVVSYGNLTV----QITENEQVVQPNAFSSNGSTVTQNNT 313 G I++ D V I G + + +I+ V AF N + Sbjct: 261 GPILLDDRVLIEGHACIQGEILIERQVEISGRAAV---IAFDDNTIHLRGPKV 310 >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain, hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 Score = 28.1 bits (61), Expect = 3.4 Identities = 20/165 (12%), Positives = 45/165 (27%), Gaps = 3/165 (1%) Query: 74 GISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGAD 133 S P +VAAV + F+ ++++S S++ G + + Sbjct: 164 SYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGG 223 Query: 134 GNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADLILQLR 193 + ++ VV +S I+ + A+ I + Sbjct: 224 QSYFS---NGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVE 280 Query: 194 NPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDL 238 + ++ I +S + P +D Sbjct: 281 RVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDA 325 >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Length = 549 Score = 27.6 bits (61), Expect = 4.9 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 1/67 (1%) Query: 99 FASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSF 158 F I V I L G V+ + DGNIY + V ++ + Sbjct: 411 FNGERRVIKVEIFENEPNKKLLGPS-VLNEVYVYDGNIYGIPPTFEGVKEQYIPILKKAK 469 Query: 159 MEGISTG 165 EG+ST Sbjct: 470 EEGVSTN 476 >2aq2_B SEC3, enterotoxin type C-3; T-cell receptor V beta domain, staphlococcal enterotoxin C3, complex structure, immune system; 1.80A {Staphylococcus aureus} SCOP: b.40.2.2 d.15.6.1 PDB: 3byy_B 3bvm_A 2aq1_B 3bzd_B 3bvz_A 3bvg_A 3byt_B 2aq3_B 1jwm_D 1i4p_A 1cqv_A 1i4q_A 1i4r_A 1i4x_A 1se2_A 1ste_A 1uns_A 2ipk_D* 1klu_D 1klg_D ... Length = 237 Score = 27.2 bits (60), Expect = 6.7 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 2/111 (1%) Query: 207 INSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRLMSEVEMLTVETDTPARVIINERTGT 266 I+ L + + E + K K +D+ V D G Sbjct: 53 ISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVWWPGKTCMYGG 112 Query: 267 IVIGDNVRISKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKV 317 I + N+ V++ EN++ ++ +VT D+K Sbjct: 113 ITKHEGNHFDNGN--LQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKA 161 >2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Length = 297 Score = 26.9 bits (59), Expect = 7.5 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 183 KDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR-- 240 ++ + +F I I+++I+S I + S T ++S+PT Sbjct: 171 NEARKFWGSVITRNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQPTISMTGVNP 230 Query: 241 -----LMSEVEMLTVETDTPARVIIN 261 +++ VI Sbjct: 231 TLKDIEGDILDVKEGINGNDVMVICQ 256 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.133 0.355 Gapped Lambda K H 0.267 0.0566 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,821,258 Number of extensions: 126635 Number of successful extensions: 415 Number of sequences better than 10.0: 1 Number of HSP's gapped: 410 Number of HSP's successfully gapped: 28 Length of query: 369 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 275 Effective length of database: 3,414,294 Effective search space: 938930850 Effective search space used: 938930850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (26.1 bits)