RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (369 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 77/522 (14%), Positives = 138/522 (26%), Gaps = 237/522 (45%)

Query: 3   FRIAFL----IFSLIG-LHEISAQVVSRIKDVVS---------------------LQSGR 36
           F   +L    I +L   L + +   + + K+++                       ++  
Sbjct: 91  FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150

Query: 37  DNQLIGYGLVVGLQGTGDS----LRS-----SPFTE---QSMRSLLQNL----------- 73
           +        + G QG  D     LR              +     L  L           
Sbjct: 151 EGNAQLV-AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209

Query: 74  --GI----------STPG-GRLGSKNVAAV-------------MVTA---NLPPFASPGS 104
             G+          +TP    L S     +             +VTA         +PG 
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLS---IPISCPLIGVIQLAHYVVTAKLLGF----TPG- 261

Query: 105 RIDVSINSLGDASSLRG------GILVMTSLLGADG--NIYAVAQGSVVVSGLF---VKG 153
             ++        S L+G      G++   ++   D   + +   + ++ V  LF   V+ 
Sbjct: 262 --EL-------RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV--LFFIGVRC 310

Query: 154 Q---------SSSFMEGISTGGKIVNG------AIVERELPKKFKDSADLILQLRN---P 195
                      S   + +        G      +I    L ++        +   N   P
Sbjct: 311 YEAYPNTSLPPSILEDSLENN----EGVPSPMLSI--SNLTQEQVQD---YVNKTNSHLP 361

Query: 196 DFSTAIRIADQINS-------------YSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRL- 241
                + I+  +N              Y LN   R           K   P+ +D +R+ 
Sbjct: 362 A-GKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLR-----------KAKAPSGLDQSRIP 408

Query: 242 MSE----VEM--LTVETD------TPARVIINERTGTIVIGDNVRIS----KVVVSY--- 282
            SE         L V +        PA  +IN+     ++ +NV  +    ++ V Y   
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKD----LVKNNVSFNAKDIQIPV-YDTF 463

Query: 283 ---------GN----LTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDNKGSFSLID- 328
                    G+    +   I     V                 T  K +       ++D 
Sbjct: 464 DGSDLRVLSGSISERIVDCIIR-LPVKWETT------------TQFKAT------HILDF 504

Query: 329 ----APDLNSLISGMNSIGLKTDGIISILQGIK--AAGALQS 364
               A  L  L    N      DG      G++   AG L  
Sbjct: 505 GPGGASGLGVLTH-RN-----KDG-----TGVRVIVAGTLDI 535



 Score = 39.9 bits (93), Expect = 0.001
 Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 30/168 (17%)

Query: 91  MVTANLPPFA-SPGS---RIDVSINSLGDASSLRGGILVMTSLLGA--DGNIYAVAQGSV 144
           M   +  P   S GS    + V   S   AS L+        +L    +G        + 
Sbjct: 1   MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN---KILPEPTEGFAADDEPTTP 57

Query: 145 VVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADLILQ------LRNPDFS 198
               L        F+  +S        ++VE     +F    +L L       L   D  
Sbjct: 58  A--ELV-----GKFLGYVS--------SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102

Query: 199 TAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRLMSEVE 246
                  Q N  +L +    I     +R +          + L   V 
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150


>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 685

 Score = 32.6 bits (74), Expect = 0.15
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
           DGN+  + +    V   F         EG++TG
Sbjct: 451 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 665

 Score = 32.2 bits (73), Expect = 0.20
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
           DGN+  + +    V   F         EG++TG
Sbjct: 451 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 648

 Score = 30.7 bits (69), Expect = 0.49
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 9/48 (18%)

Query: 127 TSLLGA---------DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
            +LLG          DGN+  + +    V   F         EG++TG
Sbjct: 436 KNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.0 bits (66), Expect = 0.80
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)

Query: 175 ERELPKKFKDSADLILQLRNPDFSTAIRI 203
           E++  KK + S    L+L   D + A+ I
Sbjct: 18  EKQALKKLQAS----LKLYADDSAPALAI 42


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.8 bits (66), Expect = 1.1
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 22/92 (23%)

Query: 276 SKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSL 335
           +KVVV+    + Q+T+  Q +    + + GST+      + V  N+GS       D+ +L
Sbjct: 502 AKVVVTTSRFSKQVTDYYQSIYAK-YGAKGSTL------IVVPFNQGS-----KQDVEAL 549

Query: 336 ISGM------NSIGLKTDGIISIL----QGIK 357
           I  +        +G   D II       QGI+
Sbjct: 550 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIE 581


>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 701

 Score = 28.8 bits (64), Expect = 2.0
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 133 DGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTG 165
           DGN+  + +    V   F         EG++TG
Sbjct: 451 DGNVIGIPESFDGVKEEFKDFLEKGKSEGVATG 483


>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium; 2.38A {Salmonella paratyphi} PDB:
           2f9c_A
          Length = 334

 Score = 28.3 bits (62), Expect = 2.9
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 265 GTIVIGDNVRISKVVVSYGNLTV----QITENEQVVQPNAFSSNGSTVTQNNT 313
           G I++ D V I       G + +    +I+    V    AF  N   +     
Sbjct: 261 GPILLDDRVLIEGHACIQGEILIERQVEISGRAAV---IAFDDNTIHLRGPKV 310


>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
           beta barrel domain, hydrolase; HET: PMS; 1.40A
           {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
          Length = 441

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 20/165 (12%), Positives = 45/165 (27%), Gaps = 3/165 (1%)

Query: 74  GISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSLLGAD 133
             S P       +VAAV    +   F+    ++++S       S++  G   +  +    
Sbjct: 164 SYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGG 223

Query: 134 GNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADLILQLR 193
            + ++     VV         +S     I+                    + A+ I  + 
Sbjct: 224 QSYFS---NGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVE 280

Query: 194 NPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDL 238
                 +               ++ I    +S    +  P  +D 
Sbjct: 281 RVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDA 325


>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
           genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
          Length = 549

 Score = 27.6 bits (61), Expect = 4.9
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 99  FASPGSRIDVSINSLGDASSLRGGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSF 158
           F      I V I        L G   V+  +   DGNIY +      V   ++     + 
Sbjct: 411 FNGERRVIKVEIFENEPNKKLLGPS-VLNEVYVYDGNIYGIPPTFEGVKEQYIPILKKAK 469

Query: 159 MEGISTG 165
            EG+ST 
Sbjct: 470 EEGVSTN 476


>2aq2_B SEC3, enterotoxin type C-3; T-cell receptor V beta domain,
           staphlococcal enterotoxin C3, complex structure, immune
           system; 1.80A {Staphylococcus aureus} SCOP: b.40.2.2
           d.15.6.1 PDB: 3byy_B 3bvm_A 2aq1_B 3bzd_B 3bvz_A 3bvg_A
           3byt_B 2aq3_B 1jwm_D 1i4p_A 1cqv_A 1i4q_A 1i4r_A 1i4x_A
           1se2_A 1ste_A 1uns_A 2ipk_D* 1klu_D 1klg_D ...
          Length = 237

 Score = 27.2 bits (60), Expect = 6.7
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 2/111 (1%)

Query: 207 INSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRLMSEVEMLTVETDTPARVIINERTGT 266
           I+   L  + +   E  +    K  K   +D+      V       D           G 
Sbjct: 53  ISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVWWPGKTCMYGG 112

Query: 267 IVIGDNVRISKVVVSYGNLTVQITENEQVVQPNAFSSNGSTVTQNNTDLKV 317
           I   +            N+ V++ EN++        ++  +VT    D+K 
Sbjct: 113 ITKHEGNHFDNGN--LQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKA 161


>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein
           turnover/protein turnover complex; 1.97A {Saccharomyces
           cerevisiae} PDB: 2dym_A
          Length = 297

 Score = 26.9 bits (59), Expect = 7.5
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 183 KDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR-- 240
            ++      +   +F   I I+++I+S         I  +  S T ++S+PT        
Sbjct: 171 NEARKFWGSVITRNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQPTISMTGVNP 230

Query: 241 -----LMSEVEMLTVETDTPARVIIN 261
                    +++          VI  
Sbjct: 231 TLKDIEGDILDVKEGINGNDVMVICQ 256


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.133    0.355 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,821,258
Number of extensions: 126635
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 28
Length of query: 369
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 275
Effective length of database: 3,414,294
Effective search space: 938930850
Effective search space used: 938930850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)