RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] (369 letters) >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201 Score = 29.6 bits (65), Expect = 0.48 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 255 PARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITEN 292 PAR + GT+ G +V I V+ GN V + Sbjct: 6 PARFDLR---GTLTHGRDVEIDTNVIIEGN--VTLGHR 38 >d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 556 Score = 28.0 bits (61), Expect = 1.2 Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 60 PFTEQSMRSLLQNLGISTP 78 PFT+ + +++ GI P Sbjct: 457 PFTQSEIIQMMKERGIGRP 475 >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Score = 26.8 bits (58), Expect = 2.8 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 3/128 (2%) Query: 232 KPTNIDLTRLMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQI-T 290 K + ++ +T++ P +V + G+++ + + GN +Q Sbjct: 30 KDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWK 89 Query: 291 ENEQVVQPNAFSSNGST--VTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDG 348 + + S N T V + + S + + I + T Sbjct: 90 SHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFD 149 Query: 349 IISILQGI 356 + L Sbjct: 150 QVINLNNT 157 >d1o75a3 b.120.1.1 (A:7-206) Tp47 lipoprotein, N-terminal domain {Treponema pallidum [TaxId: 160]} Length = 200 Score = 26.7 bits (58), Expect = 3.2 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 5/132 (3%) Query: 198 STAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTRLMSEVEMLTVETDTPAR 257 + +++ S SR + V+K + + Sbjct: 63 YAVEVLGEKVLSKQETEDSRGRKKWEYETDPSVTKMVRASASFQDLGEDGEIKFEAVEGA 122 Query: 258 VIINERTGTI-VIGDNVRISKVVVSYGNLTVQI---TENEQVVQPNAFSSNGSTVTQNNT 313 V + +R + V + +I+ V V +G V + E + + + S VT+N Sbjct: 123 VALADRASSFMVDSEEYKITNVKV-HGMKFVPVAVPHELKGIAKEKFHFVEDSRVTENTN 181 Query: 314 DLKVSDNKGSFS 325 LK + SFS Sbjct: 182 GLKTMLTEDSFS 193 >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160 Score = 25.0 bits (54), Expect = 9.7 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%) Query: 129 LLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPKKFKDSADL 188 + A N+ A+ G G+ + +++ M G+ + + DL Sbjct: 8 VASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDL 67 Query: 189 IL---QLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDS 225 L + +F+ ++ + + R S+ +AE + Sbjct: 68 QLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVAT 107 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.133 0.355 Gapped Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,206,814 Number of extensions: 53456 Number of successful extensions: 171 Number of sequences better than 10.0: 1 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 12 Length of query: 369 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 282 Effective length of database: 1,213,086 Effective search space: 342090252 Effective search space used: 342090252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (25.4 bits)