BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring
protein [Candidatus Liberibacter asiaticus str. psy62]
         (369 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 369

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP 60
           MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP
Sbjct: 1   MIFRIAFLIFSLIGLHEISAQVVSRIKDVVSLQSGRDNQLIGYGLVVGLQGTGDSLRSSP 60

Query: 61  FTEQSMRSLLQNLGISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLR 120
           FTEQSMRSLLQNLGISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLR
Sbjct: 61  FTEQSMRSLLQNLGISTPGGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLR 120

Query: 121 GGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPK 180
           GGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPK
Sbjct: 121 GGILVMTSLLGADGNIYAVAQGSVVVSGLFVKGQSSSFMEGISTGGKIVNGAIVERELPK 180

Query: 181 KFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR 240
           KFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR
Sbjct: 181 KFKDSADLILQLRNPDFSTAIRIADQINSYSLNRFSRPIAEAYDSRTVKVSKPTNIDLTR 240

Query: 241 LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNA 300
           LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNA
Sbjct: 241 LMSEVEMLTVETDTPARVIINERTGTIVIGDNVRISKVVVSYGNLTVQITENEQVVQPNA 300

Query: 301 FSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAG 360
           FSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAG
Sbjct: 301 FSSNGSTVTQNNTDLKVSDNKGSFSLIDAPDLNSLISGMNSIGLKTDGIISILQGIKAAG 360

Query: 361 ALQSEIIIQ 369
           ALQSEIIIQ
Sbjct: 361 ALQSEIIIQ 369


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 30.0 bits (66), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 79   GGRLGSKNVAAVMVTANLPPFASPGSRIDVSINSLGDASSLRGGILVMTSL 129
             GR G+K + + ++     PF   G+ +D+ +N LG  S +  G +  T L
Sbjct: 1091 AGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHL 1141


>gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 273

 Score = 23.9 bits (50), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 54  DSLRSSPFTEQSMRSLLQNLGISTPGGRLGSKNVAAV----------MV---TANLPPFA 100
           D L S+ F   ++  LL  + + T G  +G + V+ +          M+   T +LPP  
Sbjct: 159 DFLPSTIFPHDALMDLLNGISL-TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSG 217

Query: 101 SPGSRIDVSINSLG 114
           SP    D+ I +LG
Sbjct: 218 SPILTDDIEIGTLG 231


>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 23.5 bits (49), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 47  VGLQGTGDSLRSSPFTEQSMRSLLQ-NLGISTPGGRLGSKNVA 88
           +GL G G++   + + EQS+ S +Q N+    P G L SK  A
Sbjct: 177 LGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFA 219


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 423

 Score = 23.5 bits (49), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 29 VVSLQSGRDNQLIGYGLVVGLQGTGDSLRS 58
          ++ + SGRD ++IG G++  LQ     LRS
Sbjct: 41 ILKVLSGRDVEIIGEGVIEVLQDGFGFLRS 70


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.133    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,753
Number of Sequences: 1233
Number of extensions: 8877
Number of successful extensions: 33
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 11
length of query: 369
length of database: 328,796
effective HSP length: 75
effective length of query: 294
effective length of database: 236,321
effective search space: 69478374
effective search space used: 69478374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)