HHsearch alignment for GI: 254780377 and conserved domain: COG1261

>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones].

Probab=100.00  E-value=4.6e-35  Score=212.94  Aligned_cols=135  Identities=30%  Similarity=0.524  Sum_probs=128.5

Q ss_pred             ECEEEEEEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf             02077886788877520048996618743799996820178421158677303012102270000156640232100379
Q gi|254780377|r   17 LDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRG   96 (152)
Q Consensus        17 ~~~~~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G   96 (152)
T Consensus        86 ~~~~~v~~~~~~~va~r~I~~Ge~i~a~dv~~~~~~~~~l~~~~~~d~~~vvg~vskr~l~pg~~i~~~~lr~~~lV~rg  165 (220)
T COG1261          86 FVRVAVQAPGEVVVAARTIYRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLRQAWLVKRG  165 (220)
T ss_pred             CCEEEECCCCEEEEEECCCCCCCCCCHHHHEEEECCCCCCCCCCCCCHHHHHCHHHHCCCCCCCEECHHHHCCCCEEECC
T ss_conf             30024416643999932348877368657123540254579855389899736775402589989558881461057539


Q ss_pred             CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf             8799999769789999999924488897799998899888999997299899997
Q gi|254780377|r   97 AKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRVVV  151 (152)
Q Consensus        97 ~~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~~~~V~V~~  151 (152)
T Consensus       166 ~~V~~v~~~ggi~i~~~g~aL~nga~Ge~IrVrn~~SgkIvsg~V~~~G~v~V~~  220 (220)
T COG1261         166 QIVTVVAEGGGISITAEGKALENGAVGEVIRVRNVSSGKIVSGTVDGDGTVQVLL  220 (220)
T ss_pred             CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEECCCCEEEECC
T ss_conf             9889999279779998114856766665689862778867999982597388459