HHsearch alignment for GI: 254780377 and conserved domain: PRK12618
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed.
Probab=100.00 E-value=3.5e-35 Score=213.55 Aligned_cols=129 Identities=26% Similarity=0.306 Sum_probs=121.5
Q ss_pred CEEEEEEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 20778867888775200489966187437999968201784211586773030121022700001566402321003798
Q gi|254780377|r 18 DSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGA 97 (152)
Q Consensus 18 ~~~~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~ 97 (152)
T Consensus 9 ~~~~~~a~AeVvVaaR~L~rG~iIs~~Dl~~~~~~~----~~~~td~~~vvG~~~rR~l~~G~~l~~~~L~~p~lV~rG~ 84 (138)
T PRK12618 9 LLLAQPAAAETVVAARTIRALEIIGAEDLALKPGET----PGALSDPAQAIGQEARVTLYAGRPIRAGDLGPPAIVDRNQ 84 (138)
T ss_pred HHCCCCCCEEEEEECCCCCCCCCCCHHHEEEEEECC----CCCCCCHHHHCCHHEEEECCCCCEECHHHCCCCCEEECCC
T ss_conf 971887433589991321989893889918988515----5653898894293224210799789999958873893799
Q ss_pred EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEE
Q ss_conf 79999976978999999992448889779999889988899999729989999
Q gi|254780377|r 98 KVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRVV 150 (152)
Q Consensus 98 ~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~~~~V~V~ 150 (152)
T Consensus 85 ~V~i~~~~ggi~v~~~G~AL~~G~~Gd~IrV~N~~S~kiV~g~V~~~g~V~V~ 137 (138)
T PRK12618 85 IVSLSYRLGGLEIRTEGRALGRGGVGDVIRVMNLSSRTTVSGRIAADGSVIVG 137 (138)
T ss_pred EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEC
T ss_conf 89999957989999999995777799989999889999999999469789979