Query gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 152 No_of_seqs 127 out of 709 Neff 7.8 Searched_HMMs 33803 Date Wed Jun 1 12:25:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780377.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3frn_A Flagellar protein FLGA 99.7 1.1E-16 3.3E-21 111.1 7.0 61 91-151 1-61 (71) 2 >3frn_A Flagellar protein FLGA 99.6 8.6E-15 2.6E-19 100.7 8.5 76 15-90 132-207 (207) 3 >1wvo_A Sialic acid synthase; 98.2 8.3E-07 2.5E-11 56.7 3.4 62 26-90 6-67 (79) 4 >1ucs_A Antifreeze peptide RD1 98.2 1.1E-06 3.2E-11 56.0 3.9 59 28-89 4-62 (64) 5 >1msi_A Type III antifreeze pr 98.2 1.2E-06 3.5E-11 55.8 4.0 61 27-90 4-64 (70) 6 >1ops_A Type III AFP, type III 98.2 1.4E-06 4E-11 55.5 4.1 60 28-90 3-62 (64) 7 >2wqp_A Polysialic acid capsul 98.2 1.1E-06 3.3E-11 55.9 3.4 59 27-88 15-73 (73) 8 >1c89_A RD3, antifreeze protei 98.1 1.5E-06 4.4E-11 55.3 3.3 61 26-89 8-68 (70) 9 >1c89_A RD3, antifreeze protei 98.1 1.5E-06 4.4E-11 55.2 2.9 59 28-89 4-62 (64) 10 >1vli_A Spore coat polysacchar 98.0 7.4E-06 2.2E-10 51.4 4.2 60 27-90 16-79 (85) 11 >3g8r_A Probable spore coat po 90.7 0.18 5.2E-06 27.3 2.6 59 29-90 3-62 (71) 12 >3k3s_A Altronate hydrolase; s 87.3 0.19 5.6E-06 27.1 0.8 77 23-134 28-104 (105) 13 >2eb4_A 2-OXO-HEPT-3-ENE-1,7-d 70.6 5.3 0.00016 19.1 3.7 54 59-112 206-266 (267) 14 >2wqt_A 2-keto-4-pentenoate hy 58.3 6.2 0.00018 18.7 2.1 56 59-114 200-262 (270) 15 >1bw3_A Barwin, basic barley S 56.6 13 0.00038 17.0 4.0 25 121-145 62-86 (125) 16 >3l53_A Putative fumarylacetoa 52.3 15 0.00045 16.6 4.0 60 57-116 162-223 (224) 17 >1saw_A Hypothetical protein F 47.1 13 0.0004 16.9 2.4 56 57-112 163-220 (225) 18 >1gtt_A 4-hydroxyphenylacetate 44.7 20 0.00059 15.9 2.9 56 57-112 146-203 (214) 19 >1nkq_A Hypothetical 28.8 kDa 42.6 22 0.00064 15.7 4.9 61 58-118 187-249 (259) 20 >1gtt_A 4-hydroxyphenylacetate 33.5 31 0.00091 14.9 2.7 57 57-113 151-209 (215) 21 >1nr9_A Protein YCGM; structur 30.8 23 0.00067 15.6 1.4 74 37-110 139-219 (223) 22 >1y0y_A FRV operon protein FRV 30.4 35 0.001 14.6 3.2 44 98-142 4-47 (94) 23 >1n3j_A A612L, histone H3 lysi 29.4 22 0.00066 15.6 1.2 57 29-92 18-76 (84) 24 >3f9x_A Histone-lysine N-methy 29.3 23 0.0007 15.5 1.3 60 26-85 13-76 (78) 25 >2f69_A Histone-lysine N-methy 29.2 21 0.00063 15.8 1.0 25 26-50 27-51 (142) 26 >1mvh_A Cryptic LOCI regulator 29.1 24 0.0007 15.5 1.3 19 68-86 126-144 (183) 27 >3ihx_A PR domain zinc finger 28.8 29 0.00085 15.0 1.6 21 25-45 30-50 (152) 28 >2r3a_A Histone-lysine N-methy 28.1 23 0.00067 15.6 1.0 17 27-43 139-155 (195) 29 >2ftc_K 39S ribosomal protein 28.0 38 0.0011 14.4 6.2 47 91-137 2-53 (98) 30 >1h3i_A Histone H3 lysine 4 sp 27.9 23 0.00068 15.6 1.0 27 24-50 25-51 (144) 31 >1hyo_A Fumarylacetoacetate hy 27.7 5.6 0.00016 19.0 -2.2 73 58-131 201-276 (300) 32 >3h6l_A Histone-lysine N-methy 27.4 27 0.00079 15.2 1.3 54 28-85 52-109 (113) 33 >3ep0_A PR domain zinc finger 27.4 27 0.00079 15.2 1.3 25 25-49 39-63 (170) 34 >2zjr_M 50S ribosomal protein 27.0 40 0.0012 14.3 3.4 46 91-136 2-53 (143) 35 >3dal_A PR domain zinc finger 24.0 34 0.00099 14.7 1.3 21 24-44 69-89 (196) 36 >3kl9_A PEPA, glutamyl aminope 24.0 46 0.0014 13.9 4.3 45 97-142 3-47 (95) 37 >2pw0_A PRPF methylaconitate i 23.5 47 0.0014 13.9 3.2 30 114-143 116-154 (214) 38 >2w5y_A Histone-lysine N-methy 23.2 32 0.00094 14.8 1.0 63 26-89 63-129 (151) 39 >2gre_A Deblocking aminopeptid 22.3 50 0.0015 13.7 3.9 45 98-143 4-48 (98) 40 >3db5_A PR domain zinc finger 21.7 40 0.0012 14.3 1.3 26 24-49 33-58 (151) 41 >1r3e_A TRNA pseudouridine syn 21.4 52 0.0015 13.6 2.5 52 68-121 10-61 (85) 42 >3bo5_A Histone-lysine N-methy 21.4 37 0.0011 14.5 1.0 55 27-85 50-109 (114) 43 >1wzo_A HPCE; structural genom 21.1 53 0.0016 13.6 2.9 55 58-112 186-242 (246) 44 >2dfu_A Probable 2-hydroxyhept 21.0 49 0.0014 13.8 1.6 88 21-112 166-256 (264) 45 >3i1n_P 50S ribosomal protein 21.0 53 0.0016 13.6 3.6 53 85-137 12-70 (115) 46 >3ggq_A Capsid protein; beta b 20.8 29 0.00086 15.0 0.4 65 39-103 10-77 (149) No 1 >>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} (A:208-278) Probab=99.67 E-value=1.1e-16 Score=111.11 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=59.4 Q ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEEE Q ss_conf 1003798799999769789999999924488897799998899888999997299899997 Q gi|254780377|r 91 YVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRVVV 151 (152) Q Consensus 91 ~~V~~G~~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~~~~V~V~~ 151 (152) |+|++||.|.+.++.++|+|++.|+||+||++||.|||+|++|+|++.|+|+++|+|+|.. T Consensus 1 PlV~rG~~V~v~~~~~g~~I~~~g~Al~~G~~Gd~IrVrN~~Sgkii~g~V~~~g~V~V~~ 61 (71) T 3frn_A 1 PDVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETVRAMNVESRKYVFGRVERGPVLRILE 61 (71) T ss_dssp CSBCTTCEEEEEC-------CEEEEESSCBCTTCEEEEEC--CCCEEEEEEETTTEEEECC T ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEE T ss_conf 5147998899996057599999789987889898899998899998999995699699999 No 2 >>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} (A:1-207) Probab=99.57 E-value=8.6e-15 Score=100.70 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=70.1 Q ss_pred EEECEEEEEEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC Q ss_conf 3102077886788877520048996618743799996820178421158677303012102270000156640232 Q gi|254780377|r 15 LSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 15 ~~~~~~~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~ 90 (152) ...+.+.+..+.+|+||+|+|++|+.|+++|+++++++.+.++++++.+.++++|++++|+|.+|++|+.+||++| T Consensus 132 ~~~v~v~v~~~~~VvVa~r~l~rG~~I~~~Di~~~~~~~~~l~~~~~~d~~~~vG~~~~r~l~~Gq~i~~~~l~~P 207 (207) T 3frn_A 132 YVTLNMLLRKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDVSEVVGKISRRYLKEGTVLTADMVKDP 207 (207) T ss_dssp EEEEEEEEECEEEEEEESSCBCTTCBCCTTTEEEEEEEGGGCSSCBCSCHHHHTTCEESSCBCTTCBCBGGGEECC T ss_pred EEEEEEEEEEEEEEEEECCCCCCCCEECHHHHCCEEEECCCCCCCCCCCHHHHCCEEECCCCCCCCCCCHHHCCCC T ss_conf 7888657899657999944429999967777012375315689754279789589287035689994659983677 No 3 >>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=98.22 E-value=8.3e-07 Score=56.66 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=51.5 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC Q ss_conf 88877520048996618743799996820178421158677303012102270000156640232 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~ 90 (152) ..-+|++++|++|++|+++|+..++.....++. ...++++|+.++|++.+|++|..+||+.. T Consensus 6 RRSiva~~di~~G~ilt~~dl~~~RPg~~Gi~p---~~~~~iiGk~~~r~i~~g~~l~~~di~~~ 67 (79) T 1wvo_A 6 SGSVVAKVKIPEGTILTMDMLTVKVGEPKGYPP---EDIFNLVGKKVLVTVEEDDTIMEELVDNH 67 (79) T ss_dssp CCEEEESSCBCTTCBCCGGGEEEETTCCCSSCS---SSHHHHTTCBBSSCBCTTCBCCGGGBCCC T ss_pred CEEEEECCCCCCCCEEHHHHCEEECCCCCCCCC---CHHHHHCCCHHHHCCCCCCCCCHHHHHCC T ss_conf 687898980089889407632785189998693---41788731077633089792599998614 No 4 >>1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} (A:) Probab=98.21 E-value=1.1e-06 Score=56.00 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=50.1 Q ss_pred EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 87752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) -+||+++|++|++|+++|+..++-....++.. ..++++|+.+++++.+|++|..+|++. T Consensus 4 Siva~~di~~G~~lt~~~l~~~RPg~~Gi~p~---~~~~viGk~~~rdi~~~~~i~~~di~~ 62 (64) T 1ucs_A 4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAE---EIPKLVGMQVNRAVPLGTTLMPDMVKN 62 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GHHHHTTCBBSSCBCTTCBCCGGGBTT T ss_pred CEEEEEEECCCCCCCHHHHHEEECCCCCCCHH---HHHHHHHHHHHCCCCCCCCCCHHHHHC T ss_conf 15874230787542276741231278888989---999987388710516898533766630 No 5 >>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} (A:) Probab=98.21 E-value=1.2e-06 Score=55.84 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=51.3 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC Q ss_conf 8877520048996618743799996820178421158677303012102270000156640232 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~ 90 (152) .-+||+++|++|++|+++|+..++-....++.. ..++++|+.+++++.+|++|..+|++.. T Consensus 4 rSiva~~di~~G~~lt~~di~~kRPg~~Gi~p~---~~~~viGk~~~rdi~~g~~i~~~dl~~~ 64 (70) T 1msi_A 4 ASVVANQLIPINTALTLVMMRSEVVTPVGIPAE---DIPRLVSMQVNRAVPLGTTLMPDMVKGY 64 (70) T ss_dssp CEEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GHHHHTTCBBSSCBCTTCBCCGGGBTTC T ss_pred CCEEEEEEECCCCCCCHHHHEEEECCCCCCCHH---HHHHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 436875441687542275630343178888989---9989860776215068985308899753 No 6 >>1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth inhibition, pretzel fold, glycoprotein; 2.00A {Macrozoarces americanus} (A:) Probab=98.20 E-value=1.4e-06 Score=55.46 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=50.3 Q ss_pred EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC Q ss_conf 877520048996618743799996820178421158677303012102270000156640232 Q gi|254780377|r 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~ 90 (152) -+||+++|++|++|+.+|+..++-....++.. ..++++|+.++|++.+|++|..+|++.. T Consensus 3 Siva~~dI~~Ge~it~~~l~~kRPg~~Gi~p~---~~~~viGk~~~~di~~~~~i~~~di~~~ 62 (64) T 1ops_A 3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFA---EMSQLVGKQVNTPVAKGQTLMPNMVKTY 62 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GGGGTTTCBBSSCBCTTCBCCGGGBTTT T ss_pred CEEECCCCCCCCCCCHHHCCEECCCCCCCCHH---HHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 66764436898892889912644789985999---9999866876155479795289998640 No 7 >>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:277-349) Probab=98.18 E-value=1.1e-06 Score=55.94 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=49.3 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCC Q ss_conf 88775200489966187437999968201784211586773030121022700001566402 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH 88 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~ 88 (152) .-+||+++|++|++|+.+|+..++-....++.. ..++++|+.+++++.+|++|..+||+ T Consensus 15 rSiva~~di~~G~~it~~~l~~kRPg~Ggi~p~---~~~~iiGk~~~r~i~~~~~i~~~dle 73 (73) T 2wqp_A 15 ASVVADKDIKKGELLSGDNLWVKRPGNGDFSVN---EYETLFGKVAACNIRKGAQIKKTDIE 73 (73) T ss_dssp CEEEESSCBCTTCBCCTTTEEEESCTTSSSBGG---GGGGGTTCBBSSCBCTTCBCCGGGBC T ss_pred EEEEEECCCCCCCEECHHHEEEECCCCCCCCHH---HHHHHCCCEECCCCCCCCCCCHHHCC T ss_conf 689995613889896589958988979984999---99986690783445897958978879 No 8 >>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:65-134) Probab=98.14 E-value=1.5e-06 Score=55.27 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=51.5 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 8887752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) ..-+||+++|++|++|+.+|+..++.....++.. ..++++|+.+++++.+|++|..+||+. T Consensus 8 rrSiva~~di~~G~~it~~~l~~kRPg~~Gi~p~---~~~~iiGk~~~~~i~~~~~i~~~dle~ 68 (70) T 1c89_A 8 LKSVVANQLIPINTALTLVMMKAEEVSPKGIPSE---EISKLVGMQVNRAVYLDQTLMPDMVKN 68 (70) T ss_dssp SEEEEESSCBCSSCCBCTTTCEEEECSSCCCBSS---SHHHHTTBCCSSCBCSSEECCTTTSCC T ss_pred CEEEEECCCCCCCCCCCHHHCCEEECCCCCCCHH---HHHHHHCHHHHHCCCCCCCCCHHHHHC T ss_conf 2668765646898886888912552799987988---999861956441338989118899720 No 9 >>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:1-64) Probab=98.12 E-value=1.5e-06 Score=55.24 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=50.0 Q ss_pred EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 87752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) -+||+++|++|++|+++|+..++.....++.. ..++++|+.+++++.+|++|..+|++. T Consensus 4 Siva~~di~~G~~it~~~l~~~RPg~~Gi~p~---~~~~iiGk~~~~di~~~~~i~~~di~~ 62 (64) T 1c89_A 4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAE---EIPNLVGMQVNRAVPLGTTLMPDMVKN 62 (64) T ss_dssp EEEESSCBCSSCCCCTTTEEEECCSSCCSBST---THHHHTTCCCSSCBCTTEECCTTTCSS T ss_pred CEEEEEECCCCCCCCHHHHEEEECCCCCCCHH---HHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 15873130777641253611453267888878---988876267754222697010888988 No 10 >>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:301-385) Probab=97.97 E-value=7.4e-06 Score=51.40 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=47.5 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHH---HCCCCCCCCHHHHH-CEEEECCCCCCCCCCHHHCCCC Q ss_conf 8877520048996618743799996820---17842115867730-3012102270000156640232 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTNS---NIRGNYAHSIKDVV-GLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~---~~~~~~~~~~~~~i-G~~a~r~i~~G~~i~~~~l~~~ 90 (152) .-+|++++|++|++|+.+|+..++- .. .++.. ..++++ |+.++|++.+|++|..+|+... T Consensus 16 rSiva~~di~kG~~lt~~~i~~kRP-g~~~~Gi~p~---~~~~vl~Gk~~~rdi~~g~~i~~~di~~~ 79 (85) T 1vli_A 16 RGIFTTAPIQKGEAFSEDNIAVLRP-GQKPQGLHPR---FFELLTSGVRAVRDIPADTGIVWDDILLK 79 (85) T ss_dssp CEEEESSCBCTTCBCCTTTEEEECC-TTSCCCBCGG---GHHHHHTTCBCSSCBCTTCBCCGGGTSCC T ss_pred EEEEECCCCCCCCEECHHHEEEECC-CCCCCCCCHH---HHHHHHCCCEEECCCCCCCCCCHHHHCCC T ss_conf 7999905208899955899578787-7888886989---99997679399160599897799990244 No 11 >>3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} (A:280-350) Probab=90.71 E-value=0.18 Score=27.28 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=46.2 Q ss_pred EEEEEECCCCCCCCHHHEEEEEEEHHHC-CCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC Q ss_conf 7752004899661874379999682017-8421158677303012102270000156640232 Q gi|254780377|r 29 VVPSVVINAGEVLNESRLKEMQVTNSNI-RGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 29 vVa~r~I~~G~~I~~~Dl~~~~~~~~~~-~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~ 90 (152) +.++|+++.|+.++++++++..-|+... ..+-++ .-.-..++.+|.+.+|+...+|++. T Consensus 3 vf~tr~v~a~~~lsad~v~fafppvegq~tanews---ky~r~~~~~~i~a~~pv~aadlepv 62 (71) T 3g8r_A 3 VFATRPVAAGEALTADNVSFAFPPVEGQLTANEWS---KYVRYTAKTPIAADAPVXAADLEPV 62 (71) T ss_dssp EEESSCBCTTCBCBTTBEEEEBCCCTTBCBGGGCC---SSCCEEESSCBCTTCBCBGGGEEEC T ss_pred EEEECCCCCCCEECHHHEEEECCCCCCCCCHHHHH---HHCCEEECCCCCCCCCCCHHHHHHH T ss_conf 99936238899933888258778998997989999---8669158255589694798993654 No 12 >>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str} (A:) Probab=87.32 E-value=0.19 Score=27.09 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=50.0 Q ss_pred EEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEE Q ss_conf 86788877520048996618743799996820178421158677303012102270000156640232100379879999 Q gi|254780377|r 23 SVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRII 102 (152) Q Consensus 23 ~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~ 102 (152) .....|.||.++|++|+.++.++..+.- ...+ ..-.+.|.++|.+|++|. +-|+ T Consensus 28 ~~~DNVaVAl~dl~~G~~v~~~~~~i~l--~~~I---------p~GHKiAl~di~~Ge~Vi----------KYG~----- 81 (105) T 3k3s_A 28 HALDNVAVALADLAEGTEVSVDNQTVTL--RQDV---------ARGHKFALTDIAKGANVI----------KYGL----- 81 (105) T ss_dssp STTCSEEEESSCBCTTCEEEETTEEEEC--SSCB---------CTTCEEESSCBCTTCEEE----------ETTE----- T ss_pred CCCCCEEEECCCCCCCCEEEECCEEEEE--CCCC---------CCCCEEEHHHCCCCCEEE----------ECCC----- T ss_conf 8999899967746999998458906898--8558---------654723110025999838----------7895----- Q ss_pred EECCCEEEEEEEEECCCCCCCCEEEEEECCCC Q ss_conf 97697899999999244888977999988998 Q gi|254780377|r 103 LTQGNMTISTAGIALSDASIGDVIAVKNIDTG 134 (152) Q Consensus 103 ~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~ 134 (152) .-|.|.++=..|+.|.+.|+.|+ T Consensus 82 ---------~IG~At~dI~~Ge~VH~hNvks~ 104 (105) T 3k3s_A 82 ---------PIGYALADIAAGEHVHAHNTRTN 104 (105) T ss_dssp ---------EEEEESSCBCTTCEESTTTEEEC T ss_pred ---------EEEEECCCCCCCCEEEEEECCCC T ss_conf ---------82788142679988873201357 No 13 >>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A (A:) Probab=70.59 E-value=5.3 Score=19.09 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=40.0 Q ss_pred CCCCCHHHHHCEEEE------CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE Q ss_conf 211586773030121------02270000156640232100379879999976-9789999 Q gi|254780377|r 59 NYAHSIKDVVGLVTR------RVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST 112 (152) Q Consensus 59 ~~~~~~~~~iG~~a~------r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~ 112 (152) +.+.++.+.+-+.+. .+|.+|++|..--...+.-++.||.|.+.+.+ |.++++. T Consensus 206 ~~~~~p~~~l~~l~~~l~~~g~~L~~Gdvi~TGt~~g~~~~~~Gd~v~~~~~glG~l~~~v 266 (267) T 2eb4_A 206 GVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRF 266 (267) T ss_dssp GTTTSTTHHHHHHHHHHGGGTCCBCTTCEEECCCSSCCEECCTTCEEEEECGGGCEEEEEE T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEECCCCEEEEEE T ss_conf 3323899999999999997399879999998999888888899989999984676699997 No 14 >>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A (A:) Probab=58.28 E-value=6.2 Score=18.73 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=41.5 Q ss_pred CCCCCHHHHHCEEEEC------CCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEE Q ss_conf 2115867730301210------2270000156640232100379879999976-978999999 Q gi|254780377|r 59 NYAHSIKDVVGLVTRR------VLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAG 114 (152) Q Consensus 59 ~~~~~~~~~iG~~a~r------~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g 114 (152) +.+.++.+.+-+.+.+ +|.+|++|..--...+..++.||.+.+.+.. |.++++... T Consensus 200 ~~~~~p~~~l~~l~~~~~~~g~~L~~Gdii~TGt~~g~~~~~~Gd~v~~~~~glG~l~~~v~~ 262 (270) T 2wqt_A 200 ECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSS 262 (270) T ss_dssp GTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCEECCTTCEEEEEETTTEEEEEEECC T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEEECCCEEEEEEEC T ss_conf 565688999999999998769987999999899878887889998999999078479999954 No 15 >>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} (A:) Probab=56.58 E-value=13 Score=16.98 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.4 Q ss_pred CCCCEEEEEECCCCCEEEEEEEECC Q ss_conf 8897799998899888999997299 Q gi|254780377|r 121 SIGDVIAVKNIDTGVMVSGSVVDTG 145 (152) Q Consensus 121 ~~Gd~IrV~N~~S~k~v~g~V~~~~ 145 (152) .-|.-++|+|+.++|.+..+|.+.+ T Consensus 62 ~CG~c~~Vt~~~~gksV~v~V~D~c 86 (125) T 1bw3_A 62 ACGKCLRVTNPATGAQITARIVDQC 86 (125) T ss_dssp GTTCEEEEEETTTTEEEEEEEEECC T ss_pred CCCCEEEEEECCCCCEEEEEEEECC T ss_conf 5332278653266878899997503 No 16 >>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} (A:) Probab=52.29 E-value=15 Score=16.59 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=48.7 Q ss_pred CCCCCCCHHHHHCEE-EECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEEEE Q ss_conf 842115867730301-2102270000156640232100379879999976-97899999999 Q gi|254780377|r 57 RGNYAHSIKDVVGLV-TRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAGIA 116 (152) Q Consensus 57 ~~~~~~~~~~~iG~~-a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g~A 116 (152) ..+.+.++.+++-+. -..+|.+|++|..--...+..++.||.+.+.+.. |.++.+....+ T Consensus 162 ~~~~~~~p~~~i~~ls~~~~L~aGdii~tGt~~g~~~~~~Gd~~~~~~~glG~l~~~vv~~~ 223 (224) T 3l53_A 162 SAEXLFPILPLIAHXSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVV 223 (224) T ss_dssp GGGCSSCHHHHHHHHHHHSCBCTTCEEECCCCSCCEECCTTCEEEEEEEETTEEEEEEEEEE T ss_pred HHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEE T ss_conf 76252479999999868771499978994979986527899998999989998999998798 No 17 >>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} (A:) Probab=47.14 E-value=13 Score=16.87 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=42.8 Q ss_pred CCCCCCCHHHHHC-EEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE Q ss_conf 8421158677303-012102270000156640232100379879999976-9789999 Q gi|254780377|r 57 RGNYAHSIKDVVG-LVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST 112 (152) Q Consensus 57 ~~~~~~~~~~~iG-~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~ 112 (152) ..+++.++.+++- ..--.+|.+|++|..--...+..++.||.|.+.+.. |.++.+. T Consensus 163 ~~~~~~~p~~~l~~ls~~~~L~~Gdii~tGt~~~~~~~~~Gd~v~~~~~glG~l~~~v 220 (225) T 1saw_A 163 TSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKV 220 (225) T ss_dssp GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETTTEEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEE T ss_conf 7876442999999996786019996899289898750899989999987745589899 No 18 >>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} (A:1-214) Probab=44.69 E-value=20 Score=15.92 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=43.4 Q ss_pred CCCCCCCHHHHHCE-EEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE Q ss_conf 84211586773030-12102270000156640232100379879999976-9789999 Q gi|254780377|r 57 RGNYAHSIKDVVGL-VTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST 112 (152) Q Consensus 57 ~~~~~~~~~~~iG~-~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~ 112 (152) .++.+.++.+++-+ .--.+|.+|++|..--...+..++.||.+.+.+.. |.++.+. T Consensus 146 ~~~~~~~p~~~l~~ls~~~~L~~Gdvi~tGt~~~~~~~~~Gd~v~~~~~glG~l~~~v 203 (214) T 1gtt_A 146 TADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLENPV 203 (214) T ss_dssp GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCEECTTCEEEEEETTSCCEEEEE T ss_pred CCCEECCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC T ss_conf 1237039999999996899608997898089899866899989999865656534666 No 19 >>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} (A:) Probab=42.63 E-value=22 Score=15.72 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=46.8 Q ss_pred CCCCCCHHHHHCEE-EECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEE-CCCEEEEEEEEECC Q ss_conf 42115867730301-210227000015664023210037987999997-69789999999924 Q gi|254780377|r 58 GNYAHSIKDVVGLV-TRRVLLPDHVIPLSVLHRPYVISRGAKVRIILT-QGNMTISTAGIALS 118 (152) Q Consensus 58 ~~~~~~~~~~iG~~-a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~-~g~~~i~~~g~Al~ 118 (152) ++.+.++.+++-+. -..+|.+|++|..--......++.||.+.+.+. .|.++.+......+ T Consensus 187 ~~~~~~p~~~i~~ls~~~~L~~GdiI~TGt~~g~~~v~~Gd~v~~~~~glG~l~~~~~~~~~~ 249 (259) T 1nkq_A 187 NLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECEN 249 (259) T ss_dssp GGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCEEECTTCEEEEEEEETTEEEEEEEEEEEE T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEEEECCCCEEEEEEEEEE T ss_conf 251279999999986899739998998189887545799989999999589858999999975 No 20 >>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} (A:215-429) Probab=33.54 E-value=31 Score=14.90 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=43.2 Q ss_pred CCCCCCCHHHHHC-EEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEE Q ss_conf 8421158677303-012102270000156640232100379879999976-97899999 Q gi|254780377|r 57 RGNYAHSIKDVVG-LVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTA 113 (152) Q Consensus 57 ~~~~~~~~~~~iG-~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~ 113 (152) ..+++.++.+++- ..--.+|.+|++|..-....+..++.||.|.+.+.+ |.++.+.. T Consensus 151 ~~~~~~~p~~~l~~ls~~~~L~~Gdvi~TGt~~g~~~~~~Gd~v~~~i~glG~l~~~v~ 209 (215) T 1gtt_A 151 TADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVVPGDEVVVEVEGVGRLVNRIV 209 (215) T ss_dssp GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCBCCTTCEEEEEETTTEEEEEEEE T ss_pred HHHCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCEEEEEEEE T ss_conf 89829499999999967995399959988898988528999999999918713888997 No 21 >>1nr9_A Protein YCGM; structural genomics, putative isomerase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.70A {Escherichia coli} (A:) Probab=30.77 E-value=23 Score=15.63 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=48.3 Q ss_pred CCCCCCHHHEEEEEEE-----HHHCCCCCCCCHHHHHCEE-EECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEE Q ss_conf 9966187437999968-----2017842115867730301-2102270000156640232100379879999976-9789 Q gi|254780377|r 37 AGEVLNESRLKEMQVT-----NSNIRGNYAHSIKDVVGLV-TRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMT 109 (152) Q Consensus 37 ~G~~I~~~Dl~~~~~~-----~~~~~~~~~~~~~~~iG~~-a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~ 109 (152) ..+.....++...-.- ......+.+.++.+++-+. --.+|.+|++|..--+..+..++.||.+.+.+.. |.++ T Consensus 139 ~~~~~~~~~l~~~~~~ng~~~~~~~~~~~~~~p~~~i~~ls~~~~L~~Gdii~TGT~~g~~~~~~Gd~v~~~~~glg~l~ 218 (223) T 1nr9_A 139 AEFTGDPQNTTLSLSVNGEQRQQGTTADXIHKIVPLIAYXSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTT 218 (223) T ss_dssp GGCCSCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHTTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETTEEEEE T ss_pred HHHCCCCCCEEEEEEECCEEEECCHHHHHCCCHHHHHHHHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEEECCEEEE T ss_conf 88758862128999989999862437620228999999996788059998999089998727899999999998988999 Q ss_pred E Q ss_conf 9 Q gi|254780377|r 110 I 110 (152) Q Consensus 110 i 110 (152) . T Consensus 219 ~ 219 (223) T 1nr9_A 219 R 219 (223) T ss_dssp E T ss_pred E T ss_conf 9 No 22 >>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} (A:72-165) Probab=30.35 E-value=35 Score=14.59 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.0 Q ss_pred EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEE Q ss_conf 799999769789999999924488897799998899888999997 Q gi|254780377|r 98 KVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142 (152) Q Consensus 98 ~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~ 142 (152) .|+=+-.+|-+.+..-|=.-..-..|+.+++.+ .+++++.|.+. T Consensus 4 iV~~I~~~G~l~~~~iGG~~~~~~~gq~v~i~t-~~g~~i~Gvig 47 (94) T 1y0y_A 4 MVTHIEKNGFLRVAPIGGVDPKTLIAQRFKVWI-DKGKFIYGVGA 47 (94) T ss_dssp EEEEECTTSCEEEEEESSCCGGGTTTCEEEEEE-ETTEEEEEEEE T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCCCCEEE T ss_conf 889756555347850265465323788888766-24873377368 No 23 >>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} (A:1-33,A:69-119) Probab=29.39 E-value=22 Score=15.64 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=31.7 Q ss_pred EEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCC--CCHHHHHCEEEECCCCCCCCCCHHHCCCCCC Q ss_conf 775200489966187437999968201784211--5867730301210227000015664023210 Q gi|254780377|r 29 VVPSVVINAGEVLNESRLKEMQVTNSNIRGNYA--HSIKDVVGLVTRRVLLPDHVIPLSVLHRPYV 92 (152) Q Consensus 29 vVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~--~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~ 92 (152) +.|.+...+|+.+.+-+ =+-.|+-.. .+...-+...|.|+|.+|+-|+-+.....+. T Consensus 18 ~~~~~~~~~~~~~~~~N-------HSC~PN~~~~~~~~~~~i~i~AlRdIk~GEELtisYg~~~~~ 76 (84) T 1n3j_A 18 VFARKSFEKGELVEECN-------HSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWL 76 (84) T ss_dssp EEECCCBCSCEEECCCH-------SCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCC T ss_pred EEECCHHHCCCEECCCE-------ECCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEECCHHHHH T ss_conf 97893463786543446-------078988517897799989999852549999999976966840 No 24 >>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* (A:29-60,A:106-151) Probab=29.30 E-value=23 Score=15.53 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=28.2 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCC----CCCHHHHHCEEEECCCCCCCCCCHH Q ss_conf 88877520048996618743799996820178421----1586773030121022700001566 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNY----AHSIKDVVGLVTRRVLLPDHVIPLS 85 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~----~~~~~~~iG~~a~r~i~~G~~i~~~ 85 (152) +.-++++.+.++|+.+-+--=..+.++=+--|+-. ..+-..-+...|.|+|.+|+-|+-+ T Consensus 13 ~~~~~~~~~~~~~~~~~~~~N~aRfiNHSC~PNc~~~~~~~~g~~~I~i~A~RDI~~GEELTid 76 (78) T 3f9x_A 13 GRGVIATKQFSRGDFVVEYHRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFD 76 (78) T ss_dssp EEEEEESSCBCTTCEEEECCCSGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEEC T ss_pred CCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCEEEEE T ss_conf 1189889841899999996352221155467751679999899336999999878999999987 No 25 >>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} (A:96-237) Probab=29.22 E-value=21 Score=15.77 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=19.3 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEE Q ss_conf 8887752004899661874379999 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQ 50 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~ 50 (152) +--+.|+++|++|+.|..-.-+... T Consensus 27 G~Gv~A~~~i~~g~~I~~~~G~~~~ 51 (142) T 2f69_A 27 GEGLFSKVAVGPNTVMSFYNGVRIT 51 (142) T ss_dssp CEEEEESSCBCTTCEEEEECCEEEC T ss_pred CEEEEECCCCCCCCEEEEEEEEEEC T ss_conf 6699989616899999994659978 No 26 >>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} (A:1-40,A:109-166,A:215-299) Probab=29.14 E-value=24 Score=15.51 Aligned_cols=19 Identities=5% Similarity=0.177 Sum_probs=8.8 Q ss_pred HCEEEECCCCCCCCCCHHH Q ss_conf 0301210227000015664 Q gi|254780377|r 68 VGLVTRRVLLPDHVIPLSV 86 (152) Q Consensus 68 iG~~a~r~i~~G~~i~~~~ 86 (152) ++..|.|+|.+|+-|+-+. T Consensus 126 i~ifA~RDI~~GEELTiDY 144 (183) T 1mvh_A 126 LAFFAIKDIQPLEELTFDY 144 (183) T ss_dssp EEEEESSCBCTTCBCEECC T ss_pred EEEEECCCCCCCCEEEEEC T ss_conf 9999897269999898877 No 27 >>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural genomics consortium, SGC, alternative splicing; 2.50A {Homo sapiens} (A:) Probab=28.75 E-value=29 Score=15.05 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=15.8 Q ss_pred EEEEEEEEEECCCCCCCCHHH Q ss_conf 788877520048996618743 Q gi|254780377|r 25 IGHAVVPSVVINAGEVLNESR 45 (152) Q Consensus 25 ~~~vvVa~r~I~~G~~I~~~D 45 (152) .+--+.|+++|++|+.|.+-. T Consensus 30 ~G~GvfA~~~I~~g~~i~~y~ 50 (152) T 3ihx_A 30 FLGGVFSKRRIPKRTQFGPVE 50 (152) T ss_dssp TTCSEEESSCBCSSCEECCCC T ss_pred CCCEEEECCCCCCCCEEEEEE T ss_conf 684898996559999999988 No 28 >>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} (A:1-53,A:113-170,A:217-300) Probab=28.13 E-value=23 Score=15.60 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=10.1 Q ss_pred EEEEEEEECCCCCCCCH Q ss_conf 88775200489966187 Q gi|254780377|r 27 HAVVPSVVINAGEVLNE 43 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~ 43 (152) -+++|.|+|++||.|+- T Consensus 139 I~ifA~RdI~aGEELTi 155 (195) T 2r3a_A 139 IALFSTRTINAGEELTF 155 (195) T ss_dssp EEEEESSCBCTTCEEEE T ss_pred EEEEECCCCCCCCEEEE T ss_conf 99998985799998988 No 29 >>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (K:) Probab=27.99 E-value=38 Score=14.36 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=34.6 Q ss_pred CCCCCCCEEEEEEECC--C--E-EEEEEEEECCCCCCCCEEEEEECCCCCEE Q ss_conf 1003798799999769--7--8-99999999244888977999988998889 Q gi|254780377|r 91 YVISRGAKVRIILTQG--N--M-TISTAGIALSDASIGDVIAVKNIDTGVMV 137 (152) Q Consensus 91 ~~V~~G~~V~i~~~~g--~--~-~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v 137 (152) |.++.||.|.+.+... . + ....-.+|..+..++..+.|+|...|--+ T Consensus 2 P~f~~GD~v~V~~~i~e~k~r~q~f~GvvI~~~~~g~~~tftlR~i~~g~GV 53 (98) T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGV 53 (98) T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEEEEEECCCCEE T ss_conf 9637999999999977887478878999999823897369999983289359 No 30 >>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} (A:150-293) Probab=27.92 E-value=23 Score=15.57 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=19.8 Q ss_pred EEEEEEEEEEECCCCCCCCHHHEEEEE Q ss_conf 678887752004899661874379999 Q gi|254780377|r 24 VIGHAVVPSVVINAGEVLNESRLKEMQ 50 (152) Q Consensus 24 ~~~~vvVa~r~I~~G~~I~~~Dl~~~~ 50 (152) ..+--+.|+++|++|+.|.+-.-+... T Consensus 25 ~~G~Gv~A~~~I~~g~~i~~y~G~~~~ 51 (144) T 1h3i_A 25 SAGEGLFSKVAVGPNTVMSFYNGVRIT 51 (144) T ss_dssp SSSEEEEESSCBCTTCEEEEECCEEEC T ss_pred ECCEEEEEECCCCCEEEEEECCCCEEC T ss_conf 545668997754988999978985931 No 31 >>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} (A:122-421) Probab=27.73 E-value=5.6 Score=18.99 Aligned_cols=73 Identities=8% Similarity=0.057 Sum_probs=50.4 Q ss_pred CCCCCCHHHHHCEEEEC--CCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEEEECCCCCCCCEEEEEEC Q ss_conf 42115867730301210--2270000156640232100379879999976-97899999999244888977999988 Q gi|254780377|r 58 GNYAHSIKDVVGLVTRR--VLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAGIALSDASIGDVIAVKNI 131 (152) Q Consensus 58 ~~~~~~~~~~iG~~a~r--~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g~Al~~g~~Gd~IrV~N~ 131 (152) ++++....+++.+.+.+ +|.+|++|..--...+..++.||.+.+.+.. |.++.... ....--.-||.|+++.. T Consensus 201 ~d~~~~~~~li~~l~s~g~~L~aGdvI~TGT~~g~~~l~~Gd~v~~~~~glG~l~~~v~-~~~~~l~~Gd~v~~~~~ 276 (300) T 1hyo_A 201 KHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQG-QTRTFLLDGDEVIITGH 276 (300) T ss_dssp TCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTT-CEESSCCTTCEEEEEEE T ss_pred HHCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCC-CCCCCCCCCCEEEEEEE T ss_conf 85467989999999858862289988982877989877887679987055232015889-87776899989999999 No 32 >>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S- adenosyl-L-methionine, structural genomics; HET: SAM; 1.99A {Homo sapiens} (A:1-20,A:99-146,A:192-236) Probab=27.38 E-value=27 Score=15.24 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=28.6 Q ss_pred EEEEEEECCCCCCCCHHHEEEEEEEHHHCCC----CCCCCHHHHHCEEEECCCCCCCCCCHH Q ss_conf 8775200489966187437999968201784----211586773030121022700001566 Q gi|254780377|r 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRG----NYAHSIKDVVGLVTRRVLLPDHVIPLS 85 (152) Q Consensus 28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~----~~~~~~~~~iG~~a~r~i~~G~~i~~~ 85 (152) -+.+..+|.+|+.+.+.-+ ++-+--|+ .+..+-+.-++..|.|+|.+|+=|+-+ T Consensus 52 GL~a~e~I~~G~fi~esRf----iNHSC~PN~~~~~~~v~g~~ri~i~A~r~I~~GEELt~d 109 (113) T 3h6l_A 52 GLRAAKDLPSNTFVLEYRF----MNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFD 109 (113) T ss_dssp EEEESSCBCTTCEEEECGG----CEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEEC T ss_pred EEEECCCCCCCCEEEEEEE----CCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCEEEEE T ss_conf 4753567489989889801----024789870579999899589999989877999999886 No 33 >>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} (A:) Probab=27.38 E-value=27 Score=15.23 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=19.3 Q ss_pred EEEEEEEEEECCCCCCCCHHHEEEE Q ss_conf 7888775200489966187437999 Q gi|254780377|r 25 IGHAVVPSVVINAGEVLNESRLKEM 49 (152) Q Consensus 25 ~~~vvVa~r~I~~G~~I~~~Dl~~~ 49 (152) .+.-+.|.++|++|+.|.+-.-... T Consensus 39 ~G~Gvfa~~~i~~g~~i~~~~g~~~ 63 (170) T 3ep0_A 39 EGLGIFSKTWIKAGTEMGPFTGRVI 63 (170) T ss_dssp CSEEEEESSCBCTTCEEEEECCEEE T ss_pred CCEEEEECCCCCCCCEEEEECCEEE T ss_conf 8269958973399999998246897 No 34 >>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (M:24-166) Probab=27.00 E-value=40 Score=14.25 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=34.1 Q ss_pred CCCCCCCEEEEEEECCC-----E-EEEEEEEECCCCCCCCEEEEEECCCCCE Q ss_conf 10037987999997697-----8-9999999924488897799998899888 Q gi|254780377|r 91 YVISRGAKVRIILTQGN-----M-TISTAGIALSDASIGDVIAVKNIDTGVM 136 (152) Q Consensus 91 ~~V~~G~~V~i~~~~g~-----~-~i~~~g~Al~~g~~Gd~IrV~N~~S~k~ 136 (152) |.++-||+|.+.+.... + ....-+++..+..++..+.|||...|-= T Consensus 2 P~f~~GD~V~V~~~i~eg~k~RvQ~f~GvvI~~~~~Gl~stftvRki~~gvG 53 (143) T 2zjr_M 2 PDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEG 53 (143) T ss_dssp CCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEE T ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEECCCC T ss_conf 9848998999999965888655116657899961788631477244525734 No 35 >>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} (A:) Probab=24.00 E-value=34 Score=14.68 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=15.8 Q ss_pred EEEEEEEEEEECCCCCCCCHH Q ss_conf 678887752004899661874 Q gi|254780377|r 24 VIGHAVVPSVVINAGEVLNES 44 (152) Q Consensus 24 ~~~~vvVa~r~I~~G~~I~~~ 44 (152) ..+--+.|+++|++|+.|.+- T Consensus 69 ~~G~gv~a~~~i~kg~~i~~y 89 (196) T 3dal_A 69 EEVIGVMSKEYIPKGTRFGPL 89 (196) T ss_dssp CCEEEEEESSCBCTTEEECCC T ss_pred CCCEEEEECCEECCCCEEEEE T ss_conf 970789889738899999975 No 36 >>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, substrate specificity, metallopeptidase M42, hydrolase; 2.70A {Streptococcus pneumoniae R6} (A:71-165) Probab=23.96 E-value=46 Score=13.93 Aligned_cols=45 Identities=11% Similarity=-0.026 Sum_probs=34.9 Q ss_pred CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEE Q ss_conf 8799999769789999999924488897799998899888999997 Q gi|254780377|r 97 AKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142 (152) Q Consensus 97 ~~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~ 142 (152) -.|+-+-.+|-+.+..-|=....-..|+.+++.+ ..|+.+.|.+. T Consensus 3 ~mV~~I~~~G~l~~~~iGG~~~~~~~gq~V~i~t-~~g~~i~Gvig 47 (95) T 3kl9_A 3 FMVSEIKPDGTFRVVEIGGWNPMVVSSQRFKLLT-RDGHEIPVISG 47 (95) T ss_dssp EEEEEECTTSCEEEEEESCCCTTTCSSCEEEEEC-TTSCEEEEEEC T ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEE-ECCCCCCCCCC T ss_conf 8888736576156503552536556442999986-32643444203 No 37 >>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconitate binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A (A:1-192,A:376-397) Probab=23.51 E-value=47 Score=13.88 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=21.5 Q ss_pred EEECCCCCCC------C---EEEEEECCCCCEEEEEEEE Q ss_conf 9992448889------7---7999988998889999972 Q gi|254780377|r 114 GIALSDASIG------D---VIAVKNIDTGVMVSGSVVD 143 (152) Q Consensus 114 g~Al~~g~~G------d---~IrV~N~~S~k~v~g~V~~ 143 (152) .-|++.|-+- + .||+.|..++|++.++|.- T Consensus 116 pfAie~GLV~~~~~~~~~~t~VRI~ntNTgk~i~~~v~~ 154 (214) T 2pw0_A 116 AFAISNGLIDAARIPRNGVCTVRIWQANIGKTIIAHVPI 154 (214) T ss_dssp HHHHHTTCSCGGGCCSSEEEEEEEEETTTTEEEEEEEEE T ss_pred HHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEC T ss_conf 679987886555478887799999964898578999622 No 38 >>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* (A:1-82,A:124-192) Probab=23.24 E-value=32 Score=14.80 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=30.8 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCC----CCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 88877520048996618743799996820178421----15867730301210227000015664023 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNY----AHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~----~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) +--+.|.++|++|+-|.+=-+ -..++-+=.|+-. ..+....+...|.|+|.+|+-|+-+.-.. T Consensus 63 G~Gl~a~e~i~kg~fV~EY~~-a~~~NHSC~PN~~~~~~~~~~~~~i~~~A~r~I~~GeELti~Y~~~ 129 (151) T 2w5y_A 63 GRGLFCKRNIDAGEMVIEYAA-ARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFP 129 (151) T ss_dssp SEEEEESSCBCTTCEEEECCG-GGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC- T ss_pred CEEEEECCCCCCCCEEEEEEC-CCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCEEEEECCCC T ss_conf 869999960699999999985-4125667877725688752893799999804308999999976998 No 39 >>2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} (A:73-170) Probab=22.26 E-value=50 Score=13.74 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=32.1 Q ss_pred EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEE Q ss_conf 7999997697899999999244888977999988998889999972 Q gi|254780377|r 98 KVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVD 143 (152) Q Consensus 98 ~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~ 143 (152) .|+=+-.+|.+.+..-|=.-..-..|+.+++.+ +.++++.|.+.. T Consensus 4 ~V~~I~~~G~l~v~~vGG~~~~~~~gq~V~i~t-~~g~~i~Gvig~ 48 (98) T 2gre_A 4 XVKEIKPDGRLSLSXIGGFRWNSVEGEYCEIET-SSGKTYTGTILX 48 (98) T ss_dssp EEEEECTTSCEEEEEESSCCGGGTTTCEEEEEC-TTSCEEEEEEEC T ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHH-HCCCCCCCCEEE T ss_conf 789835267660036544066546789999988-547565774578 No 40 >>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 2.15A {Homo sapiens} (A:) Probab=21.65 E-value=40 Score=14.27 Aligned_cols=26 Identities=8% Similarity=-0.126 Sum_probs=19.4 Q ss_pred EEEEEEEEEEECCCCCCCCHHHEEEE Q ss_conf 67888775200489966187437999 Q gi|254780377|r 24 VIGHAVVPSVVINAGEVLNESRLKEM 49 (152) Q Consensus 24 ~~~~vvVa~r~I~~G~~I~~~Dl~~~ 49 (152) ..+.-+.|+++|++|+.|.+---+.. T Consensus 33 ~~G~gv~a~~~i~kg~~i~~y~G~~~ 58 (151) T 3db5_A 33 GAEVGVWTGETIPVRTCFGPLIGQQS 58 (151) T ss_dssp --CEEEEESSCBCTTCEECCCCCEEE T ss_pred CCCEEEEECCEECCCCEEEEEEEEEE T ss_conf 99779998971048989888878992 No 41 >>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} (A:225-309) Probab=21.39 E-value=52 Score=13.63 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=41.5 Q ss_pred HCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC Q ss_conf 030121022700001566402321003798799999769789999999924488 Q gi|254780377|r 68 VGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDAS 121 (152) Q Consensus 68 iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~g~~~i~~~g~Al~~g~ 121 (152) +...|...|..|..|...-+....-+++||.|.+....|..- ..|++.-+.. T Consensus 10 vd~~a~~~i~~Ga~L~~pGi~~~~~f~~gd~V~I~~~~g~~i--avG~~~~ss~ 61 (85) T 1r3e_A 10 VHQESTKMILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLL--ALAEAERNSS 61 (85) T ss_dssp CCTTTHHHHTTTCCEESSSCCEECCCCTTCEEEEECSSSCEE--EEEEESSCTT T ss_pred ECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE--EEEEECCCCC T ss_conf 299999998786942467433224578899999996999199--9999907865 No 42 >>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, alternative splicing, chromatin regulator, coiled coil, DNA damage, DNA repair, DNA-binding; HET: SAH; 1.59A {Homo sapiens} (A:89-155,A:207-253) Probab=21.36 E-value=37 Score=14.47 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=27.8 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCC----C-CHHHHHCEEEECCCCCCCCCCHH Q ss_conf 88775200489966187437999968201784211----5-86773030121022700001566 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYA----H-SIKDVVGLVTRRVLLPDHVIPLS 85 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~----~-~~~~~iG~~a~r~i~~G~~i~~~ 85 (152) =-+-+.++|++|+-|-+ .+.++-+--|+-.+ . +...-+...|.|+|.+|+-|+-+ T Consensus 50 wGvr~~~~I~~G~fv~e----YRfiNHSC~PN~~~~~v~~~~~~~~i~i~A~rdI~~GeELtid 109 (114) T 3bo5_A 50 WGLRTLEFIPKGRFVCE----YRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYD 109 (114) T ss_dssp EEEEESSCBCTTCEEEE----CGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEEC T ss_pred EEEEECCCCCCCCEEEE----CCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEE T ss_conf 28978975089999996----2026887789758899998898537999989965999989987 No 43 >>1wzo_A HPCE; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus HB8} (A:) Probab=21.07 E-value=53 Score=13.60 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=41.1 Q ss_pred CCCCCCHHHHH-CEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE Q ss_conf 42115867730-3012102270000156640232100379879999976-9789999 Q gi|254780377|r 58 GNYAHSIKDVV-GLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST 112 (152) Q Consensus 58 ~~~~~~~~~~i-G~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~ 112 (152) .+++.++.+++ ...--.+|.+|++|..-....+..++.||.+.+.+.. |.++.+. T Consensus 186 ~~~~~~p~~~l~~ls~~~~L~~Gdvi~tGt~~g~~~~~~Gd~~~~~~~glG~l~~~v 242 (246) T 1wzo_A 186 SRMLYSVAELLEFISEFMTLEPYDVLLTGTPKGISQVRPGDVMRLEIEGLGALENPI 242 (246) T ss_dssp GGBSSCHHHHHHHHHTTSCBCTTCEEECCCCCCSCEECTTCEEEEEETTSCEEEEEE T ss_pred CCCCCCHHHHHHHHHCCCEECCCEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEE T ss_conf 350078899999984898689994999889899833799989999986878799899 No 44 >>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} (A:) Probab=21.04 E-value=49 Score=13.78 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=56.7 Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHEEEE-EEEHHHCCCCCCCCHHHHHCE-EEECCCCCCCCCCHHHCCCCCCCCCCCE Q ss_conf 78867888775200489966187437999-968201784211586773030-1210227000015664023210037987 Q gi|254780377|r 21 FASVIGHAVVPSVVINAGEVLNESRLKEM-QVTNSNIRGNYAHSIKDVVGL-VTRRVLLPDHVIPLSVLHRPYVISRGAK 98 (152) Q Consensus 21 ~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~-~~~~~~~~~~~~~~~~~~iG~-~a~r~i~~G~~i~~~~l~~~~~V~~G~~ 98 (152) .....++..++...+...+.-..-|-+.. +-+ ..+.+.++.+++-+ .--.+|.+|++|..-.......++.||. T Consensus 166 ~~~~~gp~~~~~~~~~~~~~~l~~nge~~~~g~----~~~~~~~~~~~i~~ls~~~~L~~GdvI~tGt~~g~~~l~~Gd~ 241 (264) T 2dfu_A 166 KFLPLGPWLETDLNPQDTWVRTYVNGTLRQEGH----TSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGDR 241 (264) T ss_dssp TCEEEEEEEESSCCTTSCEEEEEETTEEEEEEE----GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCBCCTTCE T ss_pred CCCCCEEEEEEECCCCCEEEEEEECCEEEECCC----HHHHCCCHHHHHHHHHCCCEECCCEEEECCCCCCCCCCCCCCE T ss_conf 676540267652278730799999889996584----7875449999999986879859984998789898730799989 Q ss_pred EEEEEEC-CCEEEEE Q ss_conf 9999976-9789999 Q gi|254780377|r 99 VRIILTQ-GNMTIST 112 (152) Q Consensus 99 V~i~~~~-g~~~i~~ 112 (152) +.+.+.. |.++.+. T Consensus 242 v~~~~~glG~l~~~v 256 (264) T 2dfu_A 242 LEVAVEGVGTLFTLI 256 (264) T ss_dssp EEEEETTTEEEEEEE T ss_pred EEEEECCCEEEEEEE T ss_conf 999983878899888 No 45 >>3i1n_P 50S ribosomal protein L19; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P 3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* ... (P:) Probab=21.02 E-value=53 Score=13.59 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=37.1 Q ss_pred HHCCCCCCCCCCCEEEEEEE--CCCE----EEEEEEEECCCCCCCCEEEEEECCCCCEE Q ss_conf 64023210037987999997--6978----99999999244888977999988998889 Q gi|254780377|r 85 SVLHRPYVISRGAKVRIILT--QGNM----TISTAGIALSDASIGDVIAVKNIDTGVMV 137 (152) Q Consensus 85 ~~l~~~~~V~~G~~V~i~~~--~g~~----~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v 137 (152) .+-+..|.++.||.|.+.+. .|+= ....-++|..+..++..+.|+|...|--+ T Consensus 12 ~~k~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvI~~~~~g~~~tftlR~i~~gvGV 70 (115) T 3i1n_P 12 QMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGV 70 (115) T ss_dssp TCCSCCCCCCTTCCCEEEEEEECSSCEEEEEEECEEEEECCCGGGCCEEEECCBTTBCE T ss_pred HHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCCCE T ss_conf 84056998499989999999846885158899999999968984037988996377567 No 46 >>3ggq_A Capsid protein; beta barrel, cytoplasm, RNA-binding, virion; 2.00A {Hepatitis e virus genotype 1} (A:) Probab=20.78 E-value=29 Score=15.02 Aligned_cols=65 Identities=15% Similarity=0.029 Sum_probs=33.6 Q ss_pred CCCCHHHEEEEEEEHHHCCCCCCCCHHHH---HCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEE Q ss_conf 66187437999968201784211586773---030121022700001566402321003798799999 Q gi|254780377|r 39 EVLNESRLKEMQVTNSNIRGNYAHSIKDV---VGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIIL 103 (152) Q Consensus 39 ~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~---iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~ 103 (152) .++...|+-+..++..+.+.........- -.-....++..|+--..+.+.=..+--.|-.+.-+- T Consensus 10 ~~lRs~DVlwvtlt~AEy~Qs~~~~st~p~y~s~t~t~vNvaTG~~a~a~S~dW~kvTldG~~l~t~~ 77 (149) T 3ggq_A 10 SVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWTKVTLDGRPLSTIQ 77 (149) T ss_dssp TEECTTCEEEEEEETCEEESSSSSBTTBCEEEESEEEEEETTTCCEEEGGGSCTTSCEETTEECEEEE T ss_pred CEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCEEEEHHH T ss_conf 13330878999976012773102555674343016899986213513332255047677573713114 Done!