Query         gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs    127 out of 709
Neff          7.8 
Searched_HMMs 33803
Date          Wed Jun  1 12:25:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780377.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3frn_A Flagellar protein FLGA  99.7 1.1E-16 3.3E-21  111.1   7.0   61   91-151     1-61  (71)
  2 >3frn_A Flagellar protein FLGA  99.6 8.6E-15 2.6E-19  100.7   8.5   76   15-90    132-207 (207)
  3 >1wvo_A Sialic acid synthase;   98.2 8.3E-07 2.5E-11   56.7   3.4   62   26-90      6-67  (79)
  4 >1ucs_A Antifreeze peptide RD1  98.2 1.1E-06 3.2E-11   56.0   3.9   59   28-89      4-62  (64)
  5 >1msi_A Type III antifreeze pr  98.2 1.2E-06 3.5E-11   55.8   4.0   61   27-90      4-64  (70)
  6 >1ops_A Type III AFP, type III  98.2 1.4E-06   4E-11   55.5   4.1   60   28-90      3-62  (64)
  7 >2wqp_A Polysialic acid capsul  98.2 1.1E-06 3.3E-11   55.9   3.4   59   27-88     15-73  (73)
  8 >1c89_A RD3, antifreeze protei  98.1 1.5E-06 4.4E-11   55.3   3.3   61   26-89      8-68  (70)
  9 >1c89_A RD3, antifreeze protei  98.1 1.5E-06 4.4E-11   55.2   2.9   59   28-89      4-62  (64)
 10 >1vli_A Spore coat polysacchar  98.0 7.4E-06 2.2E-10   51.4   4.2   60   27-90     16-79  (85)
 11 >3g8r_A Probable spore coat po  90.7    0.18 5.2E-06   27.3   2.6   59   29-90      3-62  (71)
 12 >3k3s_A Altronate hydrolase; s  87.3    0.19 5.6E-06   27.1   0.8   77   23-134    28-104 (105)
 13 >2eb4_A 2-OXO-HEPT-3-ENE-1,7-d  70.6     5.3 0.00016   19.1   3.7   54   59-112   206-266 (267)
 14 >2wqt_A 2-keto-4-pentenoate hy  58.3     6.2 0.00018   18.7   2.1   56   59-114   200-262 (270)
 15 >1bw3_A Barwin, basic barley S  56.6      13 0.00038   17.0   4.0   25  121-145    62-86  (125)
 16 >3l53_A Putative fumarylacetoa  52.3      15 0.00045   16.6   4.0   60   57-116   162-223 (224)
 17 >1saw_A Hypothetical protein F  47.1      13  0.0004   16.9   2.4   56   57-112   163-220 (225)
 18 >1gtt_A 4-hydroxyphenylacetate  44.7      20 0.00059   15.9   2.9   56   57-112   146-203 (214)
 19 >1nkq_A Hypothetical 28.8 kDa   42.6      22 0.00064   15.7   4.9   61   58-118   187-249 (259)
 20 >1gtt_A 4-hydroxyphenylacetate  33.5      31 0.00091   14.9   2.7   57   57-113   151-209 (215)
 21 >1nr9_A Protein YCGM; structur  30.8      23 0.00067   15.6   1.4   74   37-110   139-219 (223)
 22 >1y0y_A FRV operon protein FRV  30.4      35   0.001   14.6   3.2   44   98-142     4-47  (94)
 23 >1n3j_A A612L, histone H3 lysi  29.4      22 0.00066   15.6   1.2   57   29-92     18-76  (84)
 24 >3f9x_A Histone-lysine N-methy  29.3      23  0.0007   15.5   1.3   60   26-85     13-76  (78)
 25 >2f69_A Histone-lysine N-methy  29.2      21 0.00063   15.8   1.0   25   26-50     27-51  (142)
 26 >1mvh_A Cryptic LOCI regulator  29.1      24  0.0007   15.5   1.3   19   68-86    126-144 (183)
 27 >3ihx_A PR domain zinc finger   28.8      29 0.00085   15.0   1.6   21   25-45     30-50  (152)
 28 >2r3a_A Histone-lysine N-methy  28.1      23 0.00067   15.6   1.0   17   27-43    139-155 (195)
 29 >2ftc_K 39S ribosomal protein   28.0      38  0.0011   14.4   6.2   47   91-137     2-53  (98)
 30 >1h3i_A Histone H3 lysine 4 sp  27.9      23 0.00068   15.6   1.0   27   24-50     25-51  (144)
 31 >1hyo_A Fumarylacetoacetate hy  27.7     5.6 0.00016   19.0  -2.2   73   58-131   201-276 (300)
 32 >3h6l_A Histone-lysine N-methy  27.4      27 0.00079   15.2   1.3   54   28-85     52-109 (113)
 33 >3ep0_A PR domain zinc finger   27.4      27 0.00079   15.2   1.3   25   25-49     39-63  (170)
 34 >2zjr_M 50S ribosomal protein   27.0      40  0.0012   14.3   3.4   46   91-136     2-53  (143)
 35 >3dal_A PR domain zinc finger   24.0      34 0.00099   14.7   1.3   21   24-44     69-89  (196)
 36 >3kl9_A PEPA, glutamyl aminope  24.0      46  0.0014   13.9   4.3   45   97-142     3-47  (95)
 37 >2pw0_A PRPF methylaconitate i  23.5      47  0.0014   13.9   3.2   30  114-143   116-154 (214)
 38 >2w5y_A Histone-lysine N-methy  23.2      32 0.00094   14.8   1.0   63   26-89     63-129 (151)
 39 >2gre_A Deblocking aminopeptid  22.3      50  0.0015   13.7   3.9   45   98-143     4-48  (98)
 40 >3db5_A PR domain zinc finger   21.7      40  0.0012   14.3   1.3   26   24-49     33-58  (151)
 41 >1r3e_A TRNA pseudouridine syn  21.4      52  0.0015   13.6   2.5   52   68-121    10-61  (85)
 42 >3bo5_A Histone-lysine N-methy  21.4      37  0.0011   14.5   1.0   55   27-85     50-109 (114)
 43 >1wzo_A HPCE; structural genom  21.1      53  0.0016   13.6   2.9   55   58-112   186-242 (246)
 44 >2dfu_A Probable 2-hydroxyhept  21.0      49  0.0014   13.8   1.6   88   21-112   166-256 (264)
 45 >3i1n_P 50S ribosomal protein   21.0      53  0.0016   13.6   3.6   53   85-137    12-70  (115)
 46 >3ggq_A Capsid protein; beta b  20.8      29 0.00086   15.0   0.4   65   39-103    10-77  (149)

No 1  
>>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} (A:208-278)
Probab=99.67  E-value=1.1e-16  Score=111.11  Aligned_cols=61  Identities=18%  Similarity=0.306  Sum_probs=59.4

Q ss_pred             CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEEE
Q ss_conf             1003798799999769789999999924488897799998899888999997299899997
Q gi|254780377|r   91 YVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRVVV  151 (152)
Q Consensus        91 ~~V~~G~~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~~~~V~V~~  151 (152)
                      |+|++||.|.+.++.++|+|++.|+||+||++||.|||+|++|+|++.|+|+++|+|+|..
T Consensus         1 PlV~rG~~V~v~~~~~g~~I~~~g~Al~~G~~Gd~IrVrN~~Sgkii~g~V~~~g~V~V~~   61 (71)
T 3frn_A            1 PDVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETVRAMNVESRKYVFGRVERGPVLRILE   61 (71)
T ss_dssp             CSBCTTCEEEEEC-------CEEEEESSCBCTTCEEEEEC--CCCEEEEEEETTTEEEECC
T ss_pred             CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEE
T ss_conf             5147998899996057599999789987889898899998899998999995699699999


No 2  
>>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} (A:1-207)
Probab=99.57  E-value=8.6e-15  Score=100.70  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=70.1

Q ss_pred             EEECEEEEEEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC
Q ss_conf             3102077886788877520048996618743799996820178421158677303012102270000156640232
Q gi|254780377|r   15 LSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP   90 (152)
Q Consensus        15 ~~~~~~~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~   90 (152)
                      ...+.+.+..+.+|+||+|+|++|+.|+++|+++++++.+.++++++.+.++++|++++|+|.+|++|+.+||++|
T Consensus       132 ~~~v~v~v~~~~~VvVa~r~l~rG~~I~~~Di~~~~~~~~~l~~~~~~d~~~~vG~~~~r~l~~Gq~i~~~~l~~P  207 (207)
T 3frn_A          132 YVTLNMLLRKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDVSEVVGKISRRYLKEGTVLTADMVKDP  207 (207)
T ss_dssp             EEEEEEEEECEEEEEEESSCBCTTCBCCTTTEEEEEEEGGGCSSCBCSCHHHHTTCEESSCBCTTCBCBGGGEECC
T ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCEECHHHHCCEEEECCCCCCCCCCCHHHHCCEEECCCCCCCCCCCHHHCCCC
T ss_conf             7888657899657999944429999967777012375315689754279789589287035689994659983677


No 3  
>>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=98.22  E-value=8.3e-07  Score=56.66  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC
Q ss_conf             88877520048996618743799996820178421158677303012102270000156640232
Q gi|254780377|r   26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP   90 (152)
Q Consensus        26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~   90 (152)
                      ..-+|++++|++|++|+++|+..++.....++.   ...++++|+.++|++.+|++|..+||+..
T Consensus         6 RRSiva~~di~~G~ilt~~dl~~~RPg~~Gi~p---~~~~~iiGk~~~r~i~~g~~l~~~di~~~   67 (79)
T 1wvo_A            6 SGSVVAKVKIPEGTILTMDMLTVKVGEPKGYPP---EDIFNLVGKKVLVTVEEDDTIMEELVDNH   67 (79)
T ss_dssp             CCEEEESSCBCTTCBCCGGGEEEETTCCCSSCS---SSHHHHTTCBBSSCBCTTCBCCGGGBCCC
T ss_pred             CEEEEECCCCCCCCEEHHHHCEEECCCCCCCCC---CHHHHHCCCHHHHCCCCCCCCCHHHHHCC
T ss_conf             687898980089889407632785189998693---41788731077633089792599998614


No 4  
>>1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} (A:)
Probab=98.21  E-value=1.1e-06  Score=56.00  Aligned_cols=59  Identities=20%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC
Q ss_conf             87752004899661874379999682017842115867730301210227000015664023
Q gi|254780377|r   28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR   89 (152)
Q Consensus        28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~   89 (152)
                      -+||+++|++|++|+++|+..++-....++..   ..++++|+.+++++.+|++|..+|++.
T Consensus         4 Siva~~di~~G~~lt~~~l~~~RPg~~Gi~p~---~~~~viGk~~~rdi~~~~~i~~~di~~   62 (64)
T 1ucs_A            4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAE---EIPKLVGMQVNRAVPLGTTLMPDMVKN   62 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GHHHHTTCBBSSCBCTTCBCCGGGBTT
T ss_pred             CEEEEEEECCCCCCCHHHHHEEECCCCCCCHH---HHHHHHHHHHHCCCCCCCCCCHHHHHC
T ss_conf             15874230787542276741231278888989---999987388710516898533766630


No 5  
>>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} (A:)
Probab=98.21  E-value=1.2e-06  Score=55.84  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC
Q ss_conf             8877520048996618743799996820178421158677303012102270000156640232
Q gi|254780377|r   27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP   90 (152)
Q Consensus        27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~   90 (152)
                      .-+||+++|++|++|+++|+..++-....++..   ..++++|+.+++++.+|++|..+|++..
T Consensus         4 rSiva~~di~~G~~lt~~di~~kRPg~~Gi~p~---~~~~viGk~~~rdi~~g~~i~~~dl~~~   64 (70)
T 1msi_A            4 ASVVANQLIPINTALTLVMMRSEVVTPVGIPAE---DIPRLVSMQVNRAVPLGTTLMPDMVKGY   64 (70)
T ss_dssp             CEEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GHHHHTTCBBSSCBCTTCBCCGGGBTTC
T ss_pred             CCEEEEEEECCCCCCCHHHHEEEECCCCCCCHH---HHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             436875441687542275630343178888989---9989860776215068985308899753


No 6  
>>1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth inhibition, pretzel fold, glycoprotein; 2.00A {Macrozoarces americanus} (A:)
Probab=98.20  E-value=1.4e-06  Score=55.46  Aligned_cols=60  Identities=12%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC
Q ss_conf             877520048996618743799996820178421158677303012102270000156640232
Q gi|254780377|r   28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP   90 (152)
Q Consensus        28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~   90 (152)
                      -+||+++|++|++|+.+|+..++-....++..   ..++++|+.++|++.+|++|..+|++..
T Consensus         3 Siva~~dI~~Ge~it~~~l~~kRPg~~Gi~p~---~~~~viGk~~~~di~~~~~i~~~di~~~   62 (64)
T 1ops_A            3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFA---EMSQLVGKQVNTPVAKGQTLMPNMVKTY   62 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GGGGTTTCBBSSCBCTTCBCCGGGBTTT
T ss_pred             CEEECCCCCCCCCCCHHHCCEECCCCCCCCHH---HHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             66764436898892889912644789985999---9999866876155479795289998640


No 7  
>>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:277-349)
Probab=98.18  E-value=1.1e-06  Score=55.94  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCC
Q ss_conf             88775200489966187437999968201784211586773030121022700001566402
Q gi|254780377|r   27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH   88 (152)
Q Consensus        27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~   88 (152)
                      .-+||+++|++|++|+.+|+..++-....++..   ..++++|+.+++++.+|++|..+||+
T Consensus        15 rSiva~~di~~G~~it~~~l~~kRPg~Ggi~p~---~~~~iiGk~~~r~i~~~~~i~~~dle   73 (73)
T 2wqp_A           15 ASVVADKDIKKGELLSGDNLWVKRPGNGDFSVN---EYETLFGKVAACNIRKGAQIKKTDIE   73 (73)
T ss_dssp             CEEEESSCBCTTCBCCTTTEEEESCTTSSSBGG---GGGGGTTCBBSSCBCTTCBCCGGGBC
T ss_pred             EEEEEECCCCCCCEECHHHEEEECCCCCCCCHH---HHHHHCCCEECCCCCCCCCCCHHHCC
T ss_conf             689995613889896589958988979984999---99986690783445897958978879


No 8  
>>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:65-134)
Probab=98.14  E-value=1.5e-06  Score=55.27  Aligned_cols=61  Identities=20%  Similarity=0.292  Sum_probs=51.5

Q ss_pred             EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC
Q ss_conf             8887752004899661874379999682017842115867730301210227000015664023
Q gi|254780377|r   26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR   89 (152)
Q Consensus        26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~   89 (152)
                      ..-+||+++|++|++|+.+|+..++.....++..   ..++++|+.+++++.+|++|..+||+.
T Consensus         8 rrSiva~~di~~G~~it~~~l~~kRPg~~Gi~p~---~~~~iiGk~~~~~i~~~~~i~~~dle~   68 (70)
T 1c89_A            8 LKSVVANQLIPINTALTLVMMKAEEVSPKGIPSE---EISKLVGMQVNRAVYLDQTLMPDMVKN   68 (70)
T ss_dssp             SEEEEESSCBCSSCCBCTTTCEEEECSSCCCBSS---SHHHHTTBCCSSCBCSSEECCTTTSCC
T ss_pred             CEEEEECCCCCCCCCCCHHHCCEEECCCCCCCHH---HHHHHHCHHHHHCCCCCCCCCHHHHHC
T ss_conf             2668765646898886888912552799987988---999861956441338989118899720


No 9  
>>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:1-64)
Probab=98.12  E-value=1.5e-06  Score=55.24  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=50.0

Q ss_pred             EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC
Q ss_conf             87752004899661874379999682017842115867730301210227000015664023
Q gi|254780377|r   28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR   89 (152)
Q Consensus        28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~   89 (152)
                      -+||+++|++|++|+++|+..++.....++..   ..++++|+.+++++.+|++|..+|++.
T Consensus         4 Siva~~di~~G~~it~~~l~~~RPg~~Gi~p~---~~~~iiGk~~~~di~~~~~i~~~di~~   62 (64)
T 1c89_A            4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAE---EIPNLVGMQVNRAVPLGTTLMPDMVKN   62 (64)
T ss_dssp             EEEESSCBCSSCCCCTTTEEEECCSSCCSBST---THHHHTTCCCSSCBCTTEECCTTTCSS
T ss_pred             CEEEEEECCCCCCCCHHHHEEEECCCCCCCHH---HHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             15873130777641253611453267888878---988876267754222697010888988


No 10 
>>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:301-385)
Probab=97.97  E-value=7.4e-06  Score=51.40  Aligned_cols=60  Identities=13%  Similarity=0.198  Sum_probs=47.5

Q ss_pred             EEEEEEEECCCCCCCCHHHEEEEEEEHH---HCCCCCCCCHHHHH-CEEEECCCCCCCCCCHHHCCCC
Q ss_conf             8877520048996618743799996820---17842115867730-3012102270000156640232
Q gi|254780377|r   27 HAVVPSVVINAGEVLNESRLKEMQVTNS---NIRGNYAHSIKDVV-GLVTRRVLLPDHVIPLSVLHRP   90 (152)
Q Consensus        27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~---~~~~~~~~~~~~~i-G~~a~r~i~~G~~i~~~~l~~~   90 (152)
                      .-+|++++|++|++|+.+|+..++- ..   .++..   ..++++ |+.++|++.+|++|..+|+...
T Consensus        16 rSiva~~di~kG~~lt~~~i~~kRP-g~~~~Gi~p~---~~~~vl~Gk~~~rdi~~g~~i~~~di~~~   79 (85)
T 1vli_A           16 RGIFTTAPIQKGEAFSEDNIAVLRP-GQKPQGLHPR---FFELLTSGVRAVRDIPADTGIVWDDILLK   79 (85)
T ss_dssp             CEEEESSCBCTTCBCCTTTEEEECC-TTSCCCBCGG---GHHHHHTTCBCSSCBCTTCBCCGGGTSCC
T ss_pred             EEEEECCCCCCCCEECHHHEEEECC-CCCCCCCCHH---HHHHHHCCCEEECCCCCCCCCCHHHHCCC
T ss_conf             7999905208899955899578787-7888886989---99997679399160599897799990244


No 11 
>>3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} (A:280-350)
Probab=90.71  E-value=0.18  Score=27.28  Aligned_cols=59  Identities=15%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             EEEEEECCCCCCCCHHHEEEEEEEHHHC-CCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC
Q ss_conf             7752004899661874379999682017-8421158677303012102270000156640232
Q gi|254780377|r   29 VVPSVVINAGEVLNESRLKEMQVTNSNI-RGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP   90 (152)
Q Consensus        29 vVa~r~I~~G~~I~~~Dl~~~~~~~~~~-~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~   90 (152)
                      +.++|+++.|+.++++++++..-|+... ..+-++   .-.-..++.+|.+.+|+...+|++.
T Consensus         3 vf~tr~v~a~~~lsad~v~fafppvegq~tanews---ky~r~~~~~~i~a~~pv~aadlepv   62 (71)
T 3g8r_A            3 VFATRPVAAGEALTADNVSFAFPPVEGQLTANEWS---KYVRYTAKTPIAADAPVXAADLEPV   62 (71)
T ss_dssp             EEESSCBCTTCBCBTTBEEEEBCCCTTBCBGGGCC---SSCCEEESSCBCTTCBCBGGGEEEC
T ss_pred             EEEECCCCCCCEECHHHEEEECCCCCCCCCHHHHH---HHCCEEECCCCCCCCCCCHHHHHHH
T ss_conf             99936238899933888258778998997989999---8669158255589694798993654


No 12 
>>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str} (A:)
Probab=87.32  E-value=0.19  Score=27.09  Aligned_cols=77  Identities=13%  Similarity=0.147  Sum_probs=50.0

Q ss_pred             EEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             86788877520048996618743799996820178421158677303012102270000156640232100379879999
Q gi|254780377|r   23 SVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRII  102 (152)
Q Consensus        23 ~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~  102 (152)
                      .....|.||.++|++|+.++.++..+.-  ...+         ..-.+.|.++|.+|++|.          +-|+     
T Consensus        28 ~~~DNVaVAl~dl~~G~~v~~~~~~i~l--~~~I---------p~GHKiAl~di~~Ge~Vi----------KYG~-----   81 (105)
T 3k3s_A           28 HALDNVAVALADLAEGTEVSVDNQTVTL--RQDV---------ARGHKFALTDIAKGANVI----------KYGL-----   81 (105)
T ss_dssp             STTCSEEEESSCBCTTCEEEETTEEEEC--SSCB---------CTTCEEESSCBCTTCEEE----------ETTE-----
T ss_pred             CCCCCEEEECCCCCCCCEEEECCEEEEE--CCCC---------CCCCEEEHHHCCCCCEEE----------ECCC-----
T ss_conf             8999899967746999998458906898--8558---------654723110025999838----------7895-----


Q ss_pred             EECCCEEEEEEEEECCCCCCCCEEEEEECCCC
Q ss_conf             97697899999999244888977999988998
Q gi|254780377|r  103 LTQGNMTISTAGIALSDASIGDVIAVKNIDTG  134 (152)
Q Consensus       103 ~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~  134 (152)
                               .-|.|.++=..|+.|.+.|+.|+
T Consensus        82 ---------~IG~At~dI~~Ge~VH~hNvks~  104 (105)
T 3k3s_A           82 ---------PIGYALADIAAGEHVHAHNTRTN  104 (105)
T ss_dssp             ---------EEEEESSCBCTTCEESTTTEEEC
T ss_pred             ---------EEEEECCCCCCCCEEEEEECCCC
T ss_conf             ---------82788142679988873201357


No 13 
>>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A (A:)
Probab=70.59  E-value=5.3  Score=19.09  Aligned_cols=54  Identities=13%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHCEEEE------CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE
Q ss_conf             211586773030121------02270000156640232100379879999976-9789999
Q gi|254780377|r   59 NYAHSIKDVVGLVTR------RVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST  112 (152)
Q Consensus        59 ~~~~~~~~~iG~~a~------r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~  112 (152)
                      +.+.++.+.+-+.+.      .+|.+|++|..--...+.-++.||.|.+.+.+ |.++++.
T Consensus       206 ~~~~~p~~~l~~l~~~l~~~g~~L~~Gdvi~TGt~~g~~~~~~Gd~v~~~~~glG~l~~~v  266 (267)
T 2eb4_A          206 GVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRF  266 (267)
T ss_dssp             GTTTSTTHHHHHHHHHHGGGTCCBCTTCEEECCCSSCCEECCTTCEEEEECGGGCEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEECCCCEEEEEE
T ss_conf             3323899999999999997399879999998999888888899989999984676699997


No 14 
>>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A (A:)
Probab=58.28  E-value=6.2  Score=18.73  Aligned_cols=56  Identities=11%  Similarity=0.153  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHCEEEEC------CCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEE
Q ss_conf             2115867730301210------2270000156640232100379879999976-978999999
Q gi|254780377|r   59 NYAHSIKDVVGLVTRR------VLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAG  114 (152)
Q Consensus        59 ~~~~~~~~~iG~~a~r------~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g  114 (152)
                      +.+.++.+.+-+.+.+      +|.+|++|..--...+..++.||.+.+.+.. |.++++...
T Consensus       200 ~~~~~p~~~l~~l~~~~~~~g~~L~~Gdii~TGt~~g~~~~~~Gd~v~~~~~glG~l~~~v~~  262 (270)
T 2wqt_A          200 ECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSS  262 (270)
T ss_dssp             GTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCEECCTTCEEEEEETTTEEEEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEEECCCEEEEEEEC
T ss_conf             565688999999999998769987999999899878887889998999999078479999954


No 15 
>>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} (A:)
Probab=56.58  E-value=13  Score=16.98  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             CCCCEEEEEECCCCCEEEEEEEECC
Q ss_conf             8897799998899888999997299
Q gi|254780377|r  121 SIGDVIAVKNIDTGVMVSGSVVDTG  145 (152)
Q Consensus       121 ~~Gd~IrV~N~~S~k~v~g~V~~~~  145 (152)
                      .-|.-++|+|+.++|.+..+|.+.+
T Consensus        62 ~CG~c~~Vt~~~~gksV~v~V~D~c   86 (125)
T 1bw3_A           62 ACGKCLRVTNPATGAQITARIVDQC   86 (125)
T ss_dssp             GTTCEEEEEETTTTEEEEEEEEECC
T ss_pred             CCCCEEEEEECCCCCEEEEEEEECC
T ss_conf             5332278653266878899997503


No 16 
>>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} (A:)
Probab=52.29  E-value=15  Score=16.59  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=48.7

Q ss_pred             CCCCCCCHHHHHCEE-EECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEEEE
Q ss_conf             842115867730301-2102270000156640232100379879999976-97899999999
Q gi|254780377|r   57 RGNYAHSIKDVVGLV-TRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAGIA  116 (152)
Q Consensus        57 ~~~~~~~~~~~iG~~-a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g~A  116 (152)
                      ..+.+.++.+++-+. -..+|.+|++|..--...+..++.||.+.+.+.. |.++.+....+
T Consensus       162 ~~~~~~~p~~~i~~ls~~~~L~aGdii~tGt~~g~~~~~~Gd~~~~~~~glG~l~~~vv~~~  223 (224)
T 3l53_A          162 SAEXLFPILPLIAHXSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVV  223 (224)
T ss_dssp             GGGCSSCHHHHHHHHHHHSCBCTTCEEECCCCSCCEECCTTCEEEEEEEETTEEEEEEEEEE
T ss_pred             HHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEE
T ss_conf             76252479999999868771499978994979986527899998999989998999998798


No 17 
>>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} (A:)
Probab=47.14  E-value=13  Score=16.87  Aligned_cols=56  Identities=11%  Similarity=0.064  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHC-EEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE
Q ss_conf             8421158677303-012102270000156640232100379879999976-9789999
Q gi|254780377|r   57 RGNYAHSIKDVVG-LVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST  112 (152)
Q Consensus        57 ~~~~~~~~~~~iG-~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~  112 (152)
                      ..+++.++.+++- ..--.+|.+|++|..--...+..++.||.|.+.+.. |.++.+.
T Consensus       163 ~~~~~~~p~~~l~~ls~~~~L~~Gdii~tGt~~~~~~~~~Gd~v~~~~~glG~l~~~v  220 (225)
T 1saw_A          163 TSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKV  220 (225)
T ss_dssp             GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEE
T ss_conf             7876442999999996786019996899289898750899989999987745589899


No 18 
>>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} (A:1-214)
Probab=44.69  E-value=20  Score=15.92  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHCE-EEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE
Q ss_conf             84211586773030-12102270000156640232100379879999976-9789999
Q gi|254780377|r   57 RGNYAHSIKDVVGL-VTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST  112 (152)
Q Consensus        57 ~~~~~~~~~~~iG~-~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~  112 (152)
                      .++.+.++.+++-+ .--.+|.+|++|..--...+..++.||.+.+.+.. |.++.+.
T Consensus       146 ~~~~~~~p~~~l~~ls~~~~L~~Gdvi~tGt~~~~~~~~~Gd~v~~~~~glG~l~~~v  203 (214)
T 1gtt_A          146 TADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLENPV  203 (214)
T ss_dssp             GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCEECTTCEEEEEETTSCCEEEEE
T ss_pred             CCCEECCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf             1237039999999996899608997898089899866899989999865656534666


No 19 
>>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} (A:)
Probab=42.63  E-value=22  Score=15.72  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHCEE-EECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEE-CCCEEEEEEEEECC
Q ss_conf             42115867730301-210227000015664023210037987999997-69789999999924
Q gi|254780377|r   58 GNYAHSIKDVVGLV-TRRVLLPDHVIPLSVLHRPYVISRGAKVRIILT-QGNMTISTAGIALS  118 (152)
Q Consensus        58 ~~~~~~~~~~iG~~-a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~-~g~~~i~~~g~Al~  118 (152)
                      ++.+.++.+++-+. -..+|.+|++|..--......++.||.+.+.+. .|.++.+......+
T Consensus       187 ~~~~~~p~~~i~~ls~~~~L~~GdiI~TGt~~g~~~v~~Gd~v~~~~~glG~l~~~~~~~~~~  249 (259)
T 1nkq_A          187 NLXLHPLHKILQHISTXISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDXNFECEN  249 (259)
T ss_dssp             GGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCEEECTTCEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEEEECCCCEEEEEEEEEE
T ss_conf             251279999999986899739998998189887545799989999999589858999999975


No 20 
>>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} (A:215-429)
Probab=33.54  E-value=31  Score=14.90  Aligned_cols=57  Identities=14%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHC-EEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEE
Q ss_conf             8421158677303-012102270000156640232100379879999976-97899999
Q gi|254780377|r   57 RGNYAHSIKDVVG-LVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTA  113 (152)
Q Consensus        57 ~~~~~~~~~~~iG-~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~  113 (152)
                      ..+++.++.+++- ..--.+|.+|++|..-....+..++.||.|.+.+.+ |.++.+..
T Consensus       151 ~~~~~~~p~~~l~~ls~~~~L~~Gdvi~TGt~~g~~~~~~Gd~v~~~i~glG~l~~~v~  209 (215)
T 1gtt_A          151 TADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVVPGDEVVVEVEGVGRLVNRIV  209 (215)
T ss_dssp             GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCBCCTTCEEEEEETTTEEEEEEEE
T ss_pred             HHHCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCEEEEEEEE
T ss_conf             89829499999999967995399959988898988528999999999918713888997


No 21 
>>1nr9_A Protein YCGM; structural genomics, putative isomerase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.70A {Escherichia coli} (A:)
Probab=30.77  E-value=23  Score=15.63  Aligned_cols=74  Identities=9%  Similarity=0.023  Sum_probs=48.3

Q ss_pred             CCCCCCHHHEEEEEEE-----HHHCCCCCCCCHHHHHCEE-EECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEE
Q ss_conf             9966187437999968-----2017842115867730301-2102270000156640232100379879999976-9789
Q gi|254780377|r   37 AGEVLNESRLKEMQVT-----NSNIRGNYAHSIKDVVGLV-TRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMT  109 (152)
Q Consensus        37 ~G~~I~~~Dl~~~~~~-----~~~~~~~~~~~~~~~iG~~-a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~  109 (152)
                      ..+.....++...-.-     ......+.+.++.+++-+. --.+|.+|++|..--+..+..++.||.+.+.+.. |.++
T Consensus       139 ~~~~~~~~~l~~~~~~ng~~~~~~~~~~~~~~p~~~i~~ls~~~~L~~Gdii~TGT~~g~~~~~~Gd~v~~~~~glg~l~  218 (223)
T 1nr9_A          139 AEFTGDPQNTTLSLSVNGEQRQQGTTADXIHKIVPLIAYXSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTT  218 (223)
T ss_dssp             GGCCSCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHTTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETTEEEEE
T ss_pred             HHHCCCCCCEEEEEEECCEEEECCHHHHHCCCHHHHHHHHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEEECCEEEE
T ss_conf             88758862128999989999862437620228999999996788059998999089998727899999999998988999


Q ss_pred             E
Q ss_conf             9
Q gi|254780377|r  110 I  110 (152)
Q Consensus       110 i  110 (152)
                      .
T Consensus       219 ~  219 (223)
T 1nr9_A          219 R  219 (223)
T ss_dssp             E
T ss_pred             E
T ss_conf             9


No 22 
>>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} (A:72-165)
Probab=30.35  E-value=35  Score=14.59  Aligned_cols=44  Identities=20%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf             799999769789999999924488897799998899888999997
Q gi|254780377|r   98 KVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV  142 (152)
Q Consensus        98 ~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~  142 (152)
                      .|+=+-.+|-+.+..-|=.-..-..|+.+++.+ .+++++.|.+.
T Consensus         4 iV~~I~~~G~l~~~~iGG~~~~~~~gq~v~i~t-~~g~~i~Gvig   47 (94)
T 1y0y_A            4 MVTHIEKNGFLRVAPIGGVDPKTLIAQRFKVWI-DKGKFIYGVGA   47 (94)
T ss_dssp             EEEEECTTSCEEEEEESSCCGGGTTTCEEEEEE-ETTEEEEEEEE
T ss_pred             CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCCCCEEE
T ss_conf             889756555347850265465323788888766-24873377368


No 23 
>>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} (A:1-33,A:69-119)
Probab=29.39  E-value=22  Score=15.64  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             EEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCC--CCHHHHHCEEEECCCCCCCCCCHHHCCCCCC
Q ss_conf             775200489966187437999968201784211--5867730301210227000015664023210
Q gi|254780377|r   29 VVPSVVINAGEVLNESRLKEMQVTNSNIRGNYA--HSIKDVVGLVTRRVLLPDHVIPLSVLHRPYV   92 (152)
Q Consensus        29 vVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~--~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~   92 (152)
                      +.|.+...+|+.+.+-+       =+-.|+-..  .+...-+...|.|+|.+|+-|+-+.....+.
T Consensus        18 ~~~~~~~~~~~~~~~~N-------HSC~PN~~~~~~~~~~~i~i~AlRdIk~GEELtisYg~~~~~   76 (84)
T 1n3j_A           18 VFARKSFEKGELVEECN-------HSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWL   76 (84)
T ss_dssp             EEECCCBCSCEEECCCH-------SCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCC
T ss_pred             EEECCHHHCCCEECCCE-------ECCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEECCHHHHH
T ss_conf             97893463786543446-------078988517897799989999852549999999976966840


No 24 
>>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* (A:29-60,A:106-151)
Probab=29.30  E-value=23  Score=15.53  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=28.2

Q ss_pred             EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCC----CCCHHHHHCEEEECCCCCCCCCCHH
Q ss_conf             88877520048996618743799996820178421----1586773030121022700001566
Q gi|254780377|r   26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNY----AHSIKDVVGLVTRRVLLPDHVIPLS   85 (152)
Q Consensus        26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~----~~~~~~~iG~~a~r~i~~G~~i~~~   85 (152)
                      +.-++++.+.++|+.+-+--=..+.++=+--|+-.    ..+-..-+...|.|+|.+|+-|+-+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~N~aRfiNHSC~PNc~~~~~~~~g~~~I~i~A~RDI~~GEELTid   76 (78)
T 3f9x_A           13 GRGVIATKQFSRGDFVVEYHRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFD   76 (78)
T ss_dssp             EEEEEESSCBCTTCEEEECCCSGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEEC
T ss_pred             CCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCEEEEE
T ss_conf             1189889841899999996352221155467751679999899336999999878999999987


No 25 
>>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} (A:96-237)
Probab=29.22  E-value=21  Score=15.77  Aligned_cols=25  Identities=12%  Similarity=0.214  Sum_probs=19.3

Q ss_pred             EEEEEEEEECCCCCCCCHHHEEEEE
Q ss_conf             8887752004899661874379999
Q gi|254780377|r   26 GHAVVPSVVINAGEVLNESRLKEMQ   50 (152)
Q Consensus        26 ~~vvVa~r~I~~G~~I~~~Dl~~~~   50 (152)
                      +--+.|+++|++|+.|..-.-+...
T Consensus        27 G~Gv~A~~~i~~g~~I~~~~G~~~~   51 (142)
T 2f69_A           27 GEGLFSKVAVGPNTVMSFYNGVRIT   51 (142)
T ss_dssp             CEEEEESSCBCTTCEEEEECCEEEC
T ss_pred             CEEEEECCCCCCCCEEEEEEEEEEC
T ss_conf             6699989616899999994659978


No 26 
>>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} (A:1-40,A:109-166,A:215-299)
Probab=29.14  E-value=24  Score=15.51  Aligned_cols=19  Identities=5%  Similarity=0.177  Sum_probs=8.8

Q ss_pred             HCEEEECCCCCCCCCCHHH
Q ss_conf             0301210227000015664
Q gi|254780377|r   68 VGLVTRRVLLPDHVIPLSV   86 (152)
Q Consensus        68 iG~~a~r~i~~G~~i~~~~   86 (152)
                      ++..|.|+|.+|+-|+-+.
T Consensus       126 i~ifA~RDI~~GEELTiDY  144 (183)
T 1mvh_A          126 LAFFAIKDIQPLEELTFDY  144 (183)
T ss_dssp             EEEEESSCBCTTCBCEECC
T ss_pred             EEEEECCCCCCCCEEEEEC
T ss_conf             9999897269999898877


No 27 
>>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural genomics consortium, SGC, alternative splicing; 2.50A {Homo sapiens} (A:)
Probab=28.75  E-value=29  Score=15.05  Aligned_cols=21  Identities=10%  Similarity=-0.043  Sum_probs=15.8

Q ss_pred             EEEEEEEEEECCCCCCCCHHH
Q ss_conf             788877520048996618743
Q gi|254780377|r   25 IGHAVVPSVVINAGEVLNESR   45 (152)
Q Consensus        25 ~~~vvVa~r~I~~G~~I~~~D   45 (152)
                      .+--+.|+++|++|+.|.+-.
T Consensus        30 ~G~GvfA~~~I~~g~~i~~y~   50 (152)
T 3ihx_A           30 FLGGVFSKRRIPKRTQFGPVE   50 (152)
T ss_dssp             TTCSEEESSCBCSSCEECCCC
T ss_pred             CCCEEEECCCCCCCCEEEEEE
T ss_conf             684898996559999999988


No 28 
>>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} (A:1-53,A:113-170,A:217-300)
Probab=28.13  E-value=23  Score=15.60  Aligned_cols=17  Identities=41%  Similarity=0.415  Sum_probs=10.1

Q ss_pred             EEEEEEEECCCCCCCCH
Q ss_conf             88775200489966187
Q gi|254780377|r   27 HAVVPSVVINAGEVLNE   43 (152)
Q Consensus        27 ~vvVa~r~I~~G~~I~~   43 (152)
                      -+++|.|+|++||.|+-
T Consensus       139 I~ifA~RdI~aGEELTi  155 (195)
T 2r3a_A          139 IALFSTRTINAGEELTF  155 (195)
T ss_dssp             EEEEESSCBCTTCEEEE
T ss_pred             EEEEECCCCCCCCEEEE
T ss_conf             99998985799998988


No 29 
>>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (K:)
Probab=27.99  E-value=38  Score=14.36  Aligned_cols=47  Identities=17%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEEEECC--C--E-EEEEEEEECCCCCCCCEEEEEECCCCCEE
Q ss_conf             1003798799999769--7--8-99999999244888977999988998889
Q gi|254780377|r   91 YVISRGAKVRIILTQG--N--M-TISTAGIALSDASIGDVIAVKNIDTGVMV  137 (152)
Q Consensus        91 ~~V~~G~~V~i~~~~g--~--~-~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v  137 (152)
                      |.++.||.|.+.+...  .  + ....-.+|..+..++..+.|+|...|--+
T Consensus         2 P~f~~GD~v~V~~~i~e~k~r~q~f~GvvI~~~~~g~~~tftlR~i~~g~GV   53 (98)
T 2ftc_K            2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGV   53 (98)
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEEEEEECCCCEE
T ss_conf             9637999999999977887478878999999823897369999983289359


No 30 
>>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} (A:150-293)
Probab=27.92  E-value=23  Score=15.57  Aligned_cols=27  Identities=11%  Similarity=0.176  Sum_probs=19.8

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHEEEEE
Q ss_conf             678887752004899661874379999
Q gi|254780377|r   24 VIGHAVVPSVVINAGEVLNESRLKEMQ   50 (152)
Q Consensus        24 ~~~~vvVa~r~I~~G~~I~~~Dl~~~~   50 (152)
                      ..+--+.|+++|++|+.|.+-.-+...
T Consensus        25 ~~G~Gv~A~~~I~~g~~i~~y~G~~~~   51 (144)
T 1h3i_A           25 SAGEGLFSKVAVGPNTVMSFYNGVRIT   51 (144)
T ss_dssp             SSSEEEEESSCBCTTCEEEEECCEEEC
T ss_pred             ECCEEEEEECCCCCEEEEEECCCCEEC
T ss_conf             545668997754988999978985931


No 31 
>>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} (A:122-421)
Probab=27.73  E-value=5.6  Score=18.99  Aligned_cols=73  Identities=8%  Similarity=0.057  Sum_probs=50.4

Q ss_pred             CCCCCCHHHHHCEEEEC--CCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEEEECCCCCCCCEEEEEEC
Q ss_conf             42115867730301210--2270000156640232100379879999976-97899999999244888977999988
Q gi|254780377|r   58 GNYAHSIKDVVGLVTRR--VLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAGIALSDASIGDVIAVKNI  131 (152)
Q Consensus        58 ~~~~~~~~~~iG~~a~r--~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g~Al~~g~~Gd~IrV~N~  131 (152)
                      ++++....+++.+.+.+  +|.+|++|..--...+..++.||.+.+.+.. |.++.... ....--.-||.|+++..
T Consensus       201 ~d~~~~~~~li~~l~s~g~~L~aGdvI~TGT~~g~~~l~~Gd~v~~~~~glG~l~~~v~-~~~~~l~~Gd~v~~~~~  276 (300)
T 1hyo_A          201 KHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQG-QTRTFLLDGDEVIITGH  276 (300)
T ss_dssp             TCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTT-CEESSCCTTCEEEEEEE
T ss_pred             HHCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCC-CCCCCCCCCCEEEEEEE
T ss_conf             85467989999999858862289988982877989877887679987055232015889-87776899989999999


No 32 
>>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S- adenosyl-L-methionine, structural genomics; HET: SAM; 1.99A {Homo sapiens} (A:1-20,A:99-146,A:192-236)
Probab=27.38  E-value=27  Score=15.24  Aligned_cols=54  Identities=11%  Similarity=0.161  Sum_probs=28.6

Q ss_pred             EEEEEEECCCCCCCCHHHEEEEEEEHHHCCC----CCCCCHHHHHCEEEECCCCCCCCCCHH
Q ss_conf             8775200489966187437999968201784----211586773030121022700001566
Q gi|254780377|r   28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRG----NYAHSIKDVVGLVTRRVLLPDHVIPLS   85 (152)
Q Consensus        28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~----~~~~~~~~~iG~~a~r~i~~G~~i~~~   85 (152)
                      -+.+..+|.+|+.+.+.-+    ++-+--|+    .+..+-+.-++..|.|+|.+|+=|+-+
T Consensus        52 GL~a~e~I~~G~fi~esRf----iNHSC~PN~~~~~~~v~g~~ri~i~A~r~I~~GEELt~d  109 (113)
T 3h6l_A           52 GLRAAKDLPSNTFVLEYRF----MNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFD  109 (113)
T ss_dssp             EEEESSCBCTTCEEEECGG----CEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEEC
T ss_pred             EEEECCCCCCCCEEEEEEE----CCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCEEEEE
T ss_conf             4753567489989889801----024789870579999899589999989877999999886


No 33 
>>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} (A:)
Probab=27.38  E-value=27  Score=15.23  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=19.3

Q ss_pred             EEEEEEEEEECCCCCCCCHHHEEEE
Q ss_conf             7888775200489966187437999
Q gi|254780377|r   25 IGHAVVPSVVINAGEVLNESRLKEM   49 (152)
Q Consensus        25 ~~~vvVa~r~I~~G~~I~~~Dl~~~   49 (152)
                      .+.-+.|.++|++|+.|.+-.-...
T Consensus        39 ~G~Gvfa~~~i~~g~~i~~~~g~~~   63 (170)
T 3ep0_A           39 EGLGIFSKTWIKAGTEMGPFTGRVI   63 (170)
T ss_dssp             CSEEEEESSCBCTTCEEEEECCEEE
T ss_pred             CCEEEEECCCCCCCCEEEEECCEEE
T ss_conf             8269958973399999998246897


No 34 
>>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (M:24-166)
Probab=27.00  E-value=40  Score=14.25  Aligned_cols=46  Identities=17%  Similarity=0.157  Sum_probs=34.1

Q ss_pred             CCCCCCCEEEEEEECCC-----E-EEEEEEEECCCCCCCCEEEEEECCCCCE
Q ss_conf             10037987999997697-----8-9999999924488897799998899888
Q gi|254780377|r   91 YVISRGAKVRIILTQGN-----M-TISTAGIALSDASIGDVIAVKNIDTGVM  136 (152)
Q Consensus        91 ~~V~~G~~V~i~~~~g~-----~-~i~~~g~Al~~g~~Gd~IrV~N~~S~k~  136 (152)
                      |.++-||+|.+.+....     + ....-+++..+..++..+.|||...|-=
T Consensus         2 P~f~~GD~V~V~~~i~eg~k~RvQ~f~GvvI~~~~~Gl~stftvRki~~gvG   53 (143)
T 2zjr_M            2 PDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEG   53 (143)
T ss_dssp             CCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEE
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEECCCC
T ss_conf             9848998999999965888655116657899961788631477244525734


No 35 
>>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} (A:)
Probab=24.00  E-value=34  Score=14.68  Aligned_cols=21  Identities=14%  Similarity=0.001  Sum_probs=15.8

Q ss_pred             EEEEEEEEEEECCCCCCCCHH
Q ss_conf             678887752004899661874
Q gi|254780377|r   24 VIGHAVVPSVVINAGEVLNES   44 (152)
Q Consensus        24 ~~~~vvVa~r~I~~G~~I~~~   44 (152)
                      ..+--+.|+++|++|+.|.+-
T Consensus        69 ~~G~gv~a~~~i~kg~~i~~y   89 (196)
T 3dal_A           69 EEVIGVMSKEYIPKGTRFGPL   89 (196)
T ss_dssp             CCEEEEEESSCBCTTEEECCC
T ss_pred             CCCEEEEECCEECCCCEEEEE
T ss_conf             970789889738899999975


No 36 
>>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, substrate specificity, metallopeptidase M42, hydrolase; 2.70A {Streptococcus pneumoniae R6} (A:71-165)
Probab=23.96  E-value=46  Score=13.93  Aligned_cols=45  Identities=11%  Similarity=-0.026  Sum_probs=34.9

Q ss_pred             CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf             8799999769789999999924488897799998899888999997
Q gi|254780377|r   97 AKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV  142 (152)
Q Consensus        97 ~~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~  142 (152)
                      -.|+-+-.+|-+.+..-|=....-..|+.+++.+ ..|+.+.|.+.
T Consensus         3 ~mV~~I~~~G~l~~~~iGG~~~~~~~gq~V~i~t-~~g~~i~Gvig   47 (95)
T 3kl9_A            3 FMVSEIKPDGTFRVVEIGGWNPMVVSSQRFKLLT-RDGHEIPVISG   47 (95)
T ss_dssp             EEEEEECTTSCEEEEEESCCCTTTCSSCEEEEEC-TTSCEEEEEEC
T ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEE-ECCCCCCCCCC
T ss_conf             8888736576156503552536556442999986-32643444203


No 37 
>>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconitate binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A (A:1-192,A:376-397)
Probab=23.51  E-value=47  Score=13.88  Aligned_cols=30  Identities=17%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             EEECCCCCCC------C---EEEEEECCCCCEEEEEEEE
Q ss_conf             9992448889------7---7999988998889999972
Q gi|254780377|r  114 GIALSDASIG------D---VIAVKNIDTGVMVSGSVVD  143 (152)
Q Consensus       114 g~Al~~g~~G------d---~IrV~N~~S~k~v~g~V~~  143 (152)
                      .-|++.|-+-      +   .||+.|..++|++.++|.-
T Consensus       116 pfAie~GLV~~~~~~~~~~t~VRI~ntNTgk~i~~~v~~  154 (214)
T 2pw0_A          116 AFAISNGLIDAARIPRNGVCTVRIWQANIGKTIIAHVPI  154 (214)
T ss_dssp             HHHHHTTCSCGGGCCSSEEEEEEEEETTTTEEEEEEEEE
T ss_pred             HHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEC
T ss_conf             679987886555478887799999964898578999622


No 38 
>>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* (A:1-82,A:124-192)
Probab=23.24  E-value=32  Score=14.80  Aligned_cols=63  Identities=14%  Similarity=0.125  Sum_probs=30.8

Q ss_pred             EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCC----CCCHHHHHCEEEECCCCCCCCCCHHHCCC
Q ss_conf             88877520048996618743799996820178421----15867730301210227000015664023
Q gi|254780377|r   26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNY----AHSIKDVVGLVTRRVLLPDHVIPLSVLHR   89 (152)
Q Consensus        26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~----~~~~~~~iG~~a~r~i~~G~~i~~~~l~~   89 (152)
                      +--+.|.++|++|+-|.+=-+ -..++-+=.|+-.    ..+....+...|.|+|.+|+-|+-+.-..
T Consensus        63 G~Gl~a~e~i~kg~fV~EY~~-a~~~NHSC~PN~~~~~~~~~~~~~i~~~A~r~I~~GeELti~Y~~~  129 (151)
T 2w5y_A           63 GRGLFCKRNIDAGEMVIEYAA-ARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFP  129 (151)
T ss_dssp             SEEEEESSCBCTTCEEEECCG-GGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC-
T ss_pred             CEEEEECCCCCCCCEEEEEEC-CCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCEEEEECCCC
T ss_conf             869999960699999999985-4125667877725688752893799999804308999999976998


No 39 
>>2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} (A:73-170)
Probab=22.26  E-value=50  Score=13.74  Aligned_cols=45  Identities=18%  Similarity=0.351  Sum_probs=32.1

Q ss_pred             EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf             7999997697899999999244888977999988998889999972
Q gi|254780377|r   98 KVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVD  143 (152)
Q Consensus        98 ~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~  143 (152)
                      .|+=+-.+|.+.+..-|=.-..-..|+.+++.+ +.++++.|.+..
T Consensus         4 ~V~~I~~~G~l~v~~vGG~~~~~~~gq~V~i~t-~~g~~i~Gvig~   48 (98)
T 2gre_A            4 XVKEIKPDGRLSLSXIGGFRWNSVEGEYCEIET-SSGKTYTGTILX   48 (98)
T ss_dssp             EEEEECTTSCEEEEEESSCCGGGTTTCEEEEEC-TTSCEEEEEEEC
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHH-HCCCCCCCCEEE
T ss_conf             789835267660036544066546789999988-547565774578


No 40 
>>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 2.15A {Homo sapiens} (A:)
Probab=21.65  E-value=40  Score=14.27  Aligned_cols=26  Identities=8%  Similarity=-0.126  Sum_probs=19.4

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHEEEE
Q ss_conf             67888775200489966187437999
Q gi|254780377|r   24 VIGHAVVPSVVINAGEVLNESRLKEM   49 (152)
Q Consensus        24 ~~~~vvVa~r~I~~G~~I~~~Dl~~~   49 (152)
                      ..+.-+.|+++|++|+.|.+---+..
T Consensus        33 ~~G~gv~a~~~i~kg~~i~~y~G~~~   58 (151)
T 3db5_A           33 GAEVGVWTGETIPVRTCFGPLIGQQS   58 (151)
T ss_dssp             --CEEEEESSCBCTTCEECCCCCEEE
T ss_pred             CCCEEEEECCEECCCCEEEEEEEEEE
T ss_conf             99779998971048989888878992


No 41 
>>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} (A:225-309)
Probab=21.39  E-value=52  Score=13.63  Aligned_cols=52  Identities=21%  Similarity=0.265  Sum_probs=41.5

Q ss_pred             HCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC
Q ss_conf             030121022700001566402321003798799999769789999999924488
Q gi|254780377|r   68 VGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDAS  121 (152)
Q Consensus        68 iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~g~~~i~~~g~Al~~g~  121 (152)
                      +...|...|..|..|...-+....-+++||.|.+....|..-  ..|++.-+..
T Consensus        10 vd~~a~~~i~~Ga~L~~pGi~~~~~f~~gd~V~I~~~~g~~i--avG~~~~ss~   61 (85)
T 1r3e_A           10 VHQESTKMILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLL--ALAEAERNSS   61 (85)
T ss_dssp             CCTTTHHHHTTTCCEESSSCCEECCCCTTCEEEEECSSSCEE--EEEEESSCTT
T ss_pred             ECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE--EEEEECCCCC
T ss_conf             299999998786942467433224578899999996999199--9999907865


No 42 
>>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, alternative splicing, chromatin regulator, coiled coil, DNA damage, DNA repair, DNA-binding; HET: SAH; 1.59A {Homo sapiens} (A:89-155,A:207-253)
Probab=21.36  E-value=37  Score=14.47  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=27.8

Q ss_pred             EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCC----C-CHHHHHCEEEECCCCCCCCCCHH
Q ss_conf             88775200489966187437999968201784211----5-86773030121022700001566
Q gi|254780377|r   27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYA----H-SIKDVVGLVTRRVLLPDHVIPLS   85 (152)
Q Consensus        27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~----~-~~~~~iG~~a~r~i~~G~~i~~~   85 (152)
                      =-+-+.++|++|+-|-+    .+.++-+--|+-.+    . +...-+...|.|+|.+|+-|+-+
T Consensus        50 wGvr~~~~I~~G~fv~e----YRfiNHSC~PN~~~~~v~~~~~~~~i~i~A~rdI~~GeELtid  109 (114)
T 3bo5_A           50 WGLRTLEFIPKGRFVCE----YRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYD  109 (114)
T ss_dssp             EEEEESSCBCTTCEEEE----CGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEEC
T ss_pred             EEEEECCCCCCCCEEEE----CCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEE
T ss_conf             28978975089999996----2026887789758899998898537999989965999989987


No 43 
>>1wzo_A HPCE; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus HB8} (A:)
Probab=21.07  E-value=53  Score=13.60  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHH-CEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE
Q ss_conf             42115867730-3012102270000156640232100379879999976-9789999
Q gi|254780377|r   58 GNYAHSIKDVV-GLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST  112 (152)
Q Consensus        58 ~~~~~~~~~~i-G~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~  112 (152)
                      .+++.++.+++ ...--.+|.+|++|..-....+..++.||.+.+.+.. |.++.+.
T Consensus       186 ~~~~~~p~~~l~~ls~~~~L~~Gdvi~tGt~~g~~~~~~Gd~~~~~~~glG~l~~~v  242 (246)
T 1wzo_A          186 SRMLYSVAELLEFISEFMTLEPYDVLLTGTPKGISQVRPGDVMRLEIEGLGALENPI  242 (246)
T ss_dssp             GGBSSCHHHHHHHHHTTSCBCTTCEEECCCCCCSCEECTTCEEEEEETTSCEEEEEE
T ss_pred             CCCCCCHHHHHHHHHCCCEECCCEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEE
T ss_conf             350078899999984898689994999889899833799989999986878799899


No 44 
>>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} (A:)
Probab=21.04  E-value=49  Score=13.78  Aligned_cols=88  Identities=10%  Similarity=0.021  Sum_probs=56.7

Q ss_pred             EEEEEEEEEEEEEECCCCCCCCHHHEEEE-EEEHHHCCCCCCCCHHHHHCE-EEECCCCCCCCCCHHHCCCCCCCCCCCE
Q ss_conf             78867888775200489966187437999-968201784211586773030-1210227000015664023210037987
Q gi|254780377|r   21 FASVIGHAVVPSVVINAGEVLNESRLKEM-QVTNSNIRGNYAHSIKDVVGL-VTRRVLLPDHVIPLSVLHRPYVISRGAK   98 (152)
Q Consensus        21 ~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~-~~~~~~~~~~~~~~~~~~iG~-~a~r~i~~G~~i~~~~l~~~~~V~~G~~   98 (152)
                      .....++..++...+...+.-..-|-+.. +-+    ..+.+.++.+++-+ .--.+|.+|++|..-.......++.||.
T Consensus       166 ~~~~~gp~~~~~~~~~~~~~~l~~nge~~~~g~----~~~~~~~~~~~i~~ls~~~~L~~GdvI~tGt~~g~~~l~~Gd~  241 (264)
T 2dfu_A          166 KFLPLGPWLETDLNPQDTWVRTYVNGTLRQEGH----TSQMIFSVAEILSYISTFMTLEPLDVVLTGTPEGVGALRPGDR  241 (264)
T ss_dssp             TCEEEEEEEESSCCTTSCEEEEEETTEEEEEEE----GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCCBCCTTCE
T ss_pred             CCCCCEEEEEEECCCCCEEEEEEECCEEEECCC----HHHHCCCHHHHHHHHHCCCEECCCEEEECCCCCCCCCCCCCCE
T ss_conf             676540267652278730799999889996584----7875449999999986879859984998789898730799989


Q ss_pred             EEEEEEC-CCEEEEE
Q ss_conf             9999976-9789999
Q gi|254780377|r   99 VRIILTQ-GNMTIST  112 (152)
Q Consensus        99 V~i~~~~-g~~~i~~  112 (152)
                      +.+.+.. |.++.+.
T Consensus       242 v~~~~~glG~l~~~v  256 (264)
T 2dfu_A          242 LEVAVEGVGTLFTLI  256 (264)
T ss_dssp             EEEEETTTEEEEEEE
T ss_pred             EEEEECCCEEEEEEE
T ss_conf             999983878899888


No 45 
>>3i1n_P 50S ribosomal protein L19; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P 3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* ... (P:)
Probab=21.02  E-value=53  Score=13.59  Aligned_cols=53  Identities=17%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             HHCCCCCCCCCCCEEEEEEE--CCCE----EEEEEEEECCCCCCCCEEEEEECCCCCEE
Q ss_conf             64023210037987999997--6978----99999999244888977999988998889
Q gi|254780377|r   85 SVLHRPYVISRGAKVRIILT--QGNM----TISTAGIALSDASIGDVIAVKNIDTGVMV  137 (152)
Q Consensus        85 ~~l~~~~~V~~G~~V~i~~~--~g~~----~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v  137 (152)
                      .+-+..|.++.||.|.+.+.  .|+=    ....-++|..+..++..+.|+|...|--+
T Consensus        12 ~~k~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvI~~~~~g~~~tftlR~i~~gvGV   70 (115)
T 3i1n_P           12 QMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGV   70 (115)
T ss_dssp             TCCSCCCCCCTTCCCEEEEEEECSSCEEEEEEECEEEEECCCGGGCCEEEECCBTTBCE
T ss_pred             HHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCCCE
T ss_conf             84056998499989999999846885158899999999968984037988996377567


No 46 
>>3ggq_A Capsid protein; beta barrel, cytoplasm, RNA-binding, virion; 2.00A {Hepatitis e virus genotype 1} (A:)
Probab=20.78  E-value=29  Score=15.02  Aligned_cols=65  Identities=15%  Similarity=0.029  Sum_probs=33.6

Q ss_pred             CCCCHHHEEEEEEEHHHCCCCCCCCHHHH---HCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEE
Q ss_conf             66187437999968201784211586773---030121022700001566402321003798799999
Q gi|254780377|r   39 EVLNESRLKEMQVTNSNIRGNYAHSIKDV---VGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIIL  103 (152)
Q Consensus        39 ~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~---iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~  103 (152)
                      .++...|+-+..++..+.+.........-   -.-....++..|+--..+.+.=..+--.|-.+.-+-
T Consensus        10 ~~lRs~DVlwvtlt~AEy~Qs~~~~st~p~y~s~t~t~vNvaTG~~a~a~S~dW~kvTldG~~l~t~~   77 (149)
T 3ggq_A           10 SVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWTKVTLDGRPLSTIQ   77 (149)
T ss_dssp             TEECTTCEEEEEEETCEEESSSSSBTTBCEEEESEEEEEETTTCCEEEGGGSCTTSCEETTEECEEEE
T ss_pred             CEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCEEEEHHH
T ss_conf             13330878999976012773102555674343016899986213513332255047677573713114


Done!