Query gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 152 No_of_seqs 127 out of 709 Neff 7.8 Searched_HMMs 23785 Date Mon May 30 09:46:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780377.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3frn_A Flagellar protein FLGA; 100.0 9.3E-34 3.9E-38 204.5 14.8 133 18-150 135-267 (278) 2 1wvo_A Sialic acid synthase; a 98.2 5.7E-07 2.4E-11 56.7 3.7 61 26-89 6-66 (79) 3 1ops_A Type III AFP, type III 98.1 1.2E-06 5.1E-11 54.9 3.8 59 28-89 3-61 (64) 4 1msi_A Type III antifreeze pro 98.1 1.4E-06 5.8E-11 54.6 3.9 61 27-90 4-64 (70) 5 1c89_A RD3, antifreeze protein 98.0 2.6E-06 1.1E-10 53.1 3.3 61 26-89 72-132 (134) 6 1ucs_A Antifreeze peptide RD1; 97.8 1.1E-05 4.4E-10 49.7 4.0 60 27-89 3-62 (64) 7 2wqp_A Polysialic acid capsule 97.7 1.7E-05 7.3E-10 48.5 3.3 60 26-88 290-349 (349) 8 3g8r_A Probable spore coat pol 97.6 3E-05 1.3E-09 47.2 3.6 65 26-96 279-344 (350) 9 1vli_A Spore coat polysacchari 97.3 0.00018 7.6E-09 42.9 4.1 61 26-89 315-378 (385) 10 3k3s_A Altronate hydrolase; st 88.0 0.059 2.5E-06 29.1 -0.7 79 21-134 26-104 (105) 11 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 84.1 0.63 2.7E-05 23.4 3.0 61 52-112 203-266 (267) 12 2wqt_A 2-keto-4-pentenoate hyd 71.8 1.8 7.4E-05 20.9 2.2 58 58-115 203-263 (270) 13 2zjr_M 50S ribosomal protein L 63.6 5.8 0.00025 18.0 3.5 52 84-135 18-75 (166) 14 1nr9_A Protein YCGM; structura 46.7 6.7 0.00028 17.7 1.5 49 57-105 164-213 (223) 15 2ftc_K 39S ribosomal protein L 34.4 21 0.00088 15.0 5.4 47 91-137 2-53 (98) 16 3l53_A Putative fumarylacetoac 32.4 23 0.00095 14.8 4.1 60 57-116 162-223 (224) 17 3f9x_A Histone-lysine N-methyl 28.3 18 0.00074 15.4 1.3 18 25-42 40-57 (166) 18 1n3j_A A612L, histone H3 lysin 24.8 21 0.0009 14.9 1.2 21 25-45 14-34 (119) 19 3cpf_A Eukaryotic translation 24.1 32 0.0014 13.9 9.0 54 93-149 12-68 (138) 20 3n71_A Histone lysine methyltr 22.4 27 0.0011 14.4 1.3 21 24-44 16-36 (490) 21 2w5y_A Histone-lysine N-methyl 22.0 25 0.001 14.6 1.0 17 26-42 63-79 (192) 22 3pdn_A SET and MYND domain-con 21.3 28 0.0012 14.3 1.2 19 24-42 13-31 (428) 23 1ml9_A Histone H3 methyltransf 20.2 28 0.0012 14.3 1.0 18 25-42 143-160 (302) No 1 >3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} Probab=100.00 E-value=9.3e-34 Score=204.52 Aligned_cols=133 Identities=21% Similarity=0.328 Sum_probs=128.3 Q ss_pred CEEEEEEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCCC Q ss_conf 20778867888775200489966187437999968201784211586773030121022700001566402321003798 Q gi|254780377|r 18 DSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGA 97 (152) Q Consensus 18 ~~~~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~ 97 (152) ....+..+.+|+||+++|++|++|+++|+++++++.+.++.+++.+.++++|++++|+|.+|+||+.+||++|++|++|| T Consensus 135 ~~~~~r~~~~VvVa~r~I~~G~~It~~Dl~~~~~~~~~~~~~~~~~~~~viGk~a~r~i~~G~~i~~~~l~~~~~V~~G~ 214 (278) T 3frn_A 135 LNMLLRKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDVSEVVGKISRRYLKEGTVLTADMVKDPPDVVKGQ 214 (278) T ss_dssp EEEEEECEEEEEEESSCBCTTCBCCTTTEEEEEEEGGGCSSCBCSCHHHHTTCEESSCBCTTCBCBGGGEECCCSBCTTC T ss_pred EEEEEEEEEEEEEECCCCCCCCEECHHHHCCEEEECCCCCCCCCCCHHHHCCEEECCCCCCCCCCCHHHCCCCCCCCCCC T ss_conf 86578996579999444299999677770123753156897542797895892870356899946599836775147998 Q ss_pred EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCEEEEE Q ss_conf 79999976978999999992448889779999889988899999729989999 Q gi|254780377|r 98 KVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVRVV 150 (152) Q Consensus 98 ~V~i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v~g~V~~~~~V~V~ 150 (152) .|.+.++.|+++|++.|+|+++|+.||.|+|+|++|||++.|+|.++|+|+|+ T Consensus 215 ~V~i~~~~g~i~i~~~g~Al~~G~~Gd~I~V~N~~S~k~i~g~V~~~g~V~Vi 267 (278) T 3frn_A 215 VVPAYVDMGSIKVTTFVEVLENGYLGETVRAMNVESRKYVFGRVERGPVLRIL 267 (278) T ss_dssp EEEEEC-------CEEEEESSCBCTTCEEEEEC--CCCEEEEEEETTTEEEEC T ss_pred EEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEE T ss_conf 89999605759999978998788989889999889999899999569969999 No 2 >1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.24 E-value=5.7e-07 Score=56.73 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=51.9 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 8887752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) ..-+||+++|++|++|+.+|+..++.+-..++ ..+.++++|+.+.+++.+|++|+.+|++. T Consensus 6 r~SivA~~~I~kG~~it~~~l~~kr~p~~Gi~---p~~~~~iiGkk~~~di~~ge~I~~~~i~n 66 (79) T 1wvo_A 6 SGSVVAKVKIPEGTILTMDMLTVKVGEPKGYP---PEDIFNLVGKKVLVTVEEDDTIMEELVDN 66 (79) T ss_dssp CCEEEESSCBCTTCBCCGGGEEEETTCCCSSC---SSSHHHHTTCBBSSCBCTTCBCCGGGBCC T ss_pred CEEEEECCCCCCCCCCCHHHCCCCCCCCCCCC---HHHHHHHHCHHHHCCCCCCCCCCHHHHHH T ss_conf 68688898338989914865604358999879---89999981627442338959158999860 No 3 >1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth inhibition, pretzel fold, glycoprotein; 2.00A {Macrozoarces americanus} SCOP: b.85.1.1 Probab=98.15 E-value=1.2e-06 Score=54.92 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=49.9 Q ss_pred EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 87752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) -+||+++|++|+.|+.+|++.++.+-..++. .+.++++|+.+++++.+|++|+.+|++. T Consensus 3 Siva~~~I~~g~~lt~~~l~~kr~~~~GI~p---~~~~~iiGkka~~di~~g~~l~~d~vk~ 61 (64) T 1ops_A 3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPF---AEMSQLVGKQVNTPVAKGQTLMPNMVKT 61 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBG---GGGGGTTTCBBSSCBCTTCBCCGGGBTT T ss_pred CEEECCCCCCCCEEEHHHCEEEECCCCCCCH---HHHHHHCCCEECCCCCCCCCCCHHHHHC T ss_conf 5887764699989616534477079997698---7999875964625237959568999513 No 4 >1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} SCOP: b.85.1.1 Probab=98.14 E-value=1.4e-06 Score=54.58 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=51.4 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC Q ss_conf 8877520048996618743799996820178421158677303012102270000156640232 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~ 90 (152) .-+||+++|++|++|+.+|+..++..-..++.. +.++++|+.++++|..|++|..+|++.- T Consensus 4 ~SiVA~~~I~~G~~lt~~~l~~Krp~p~GI~P~---~~~~IIGKkak~dI~~d~~I~~dmik~~ 64 (70) T 1msi_A 4 ASVVANQLIPINTALTLVMMRSEVVTPVGIPAE---DIPRLVSMQVNRAVPLGTTLMPDMVKGY 64 (70) T ss_dssp CEEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GHHHHTTCBBSSCBCTTCBCCGGGBTTC T ss_pred EEEEECCCCCCCCEECHHHEEEECCCCCCCCHH---HHHHHHCHHHHCCCCCCCCCCHHHHHHH T ss_conf 336866635998882689800654788981999---9999827676166489687289998503 No 5 >1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} SCOP: b.85.1.1 b.85.1.1 PDB: 1c8a_A 3nla_A 3rdn_A Probab=98.01 E-value=2.6e-06 Score=53.07 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=51.4 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 8887752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) ..-+||+++|++|+.|+.+|+..++.+-..++. .+.++++|+.+++++.+|++|+.++++- T Consensus 72 rksiva~~~i~~G~~~t~~~i~~kr~p~~Gi~p---~~~~~ilGk~~~~di~~~~~i~~d~i~n 132 (134) T 1c89_A 72 LKSVVANQLIPINTALTLVMMKAEEVSPKGIPS---EEISKLVGMQVNRAVYLDQTLMPDMVKN 132 (134) T ss_dssp SEEEEESSCBCSSCCBCTTTCEEEECSSCCCBS---SSHHHHTTBCCSSCBCSSEECCTTTSCC T ss_pred EEEEEECCCCCCCCCCCHHHEEEEECCCCCCCH---HHHHHHCCCEECCCCCCCCCCCHHHHHC T ss_conf 268998774089887388993367189999899---9999863910516638969028999604 No 6 >1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} SCOP: b.85.1.1 PDB: 9ame_A 1ame_A 1kde_A 1kdf_A 1gzi_A 1hg7_A 1b7i_A 2spg_A 1jab_A 1b7j_A 2msj_A 1ekl_A 4ame_A 7ame_A 2ame_A 1msj_A 1b7k_A 6ame_A 9msi_A 2jia_A ... Probab=97.84 E-value=1.1e-05 Score=49.73 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=50.6 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 887752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) .-+||+++|+.|+.|+.+|++.+-.+-..++ ..+..+++|+.+.+++..+++|..+|++. T Consensus 3 ~SvVA~~~Ip~gt~lT~~mlt~KV~~P~GIp---~e~i~~iVGk~v~~~V~~D~~l~~~mvk~ 62 (64) T 1ucs_A 3 ASVVANQLIPINTALTLIMMKAEVVTPMGIP---AEEIPKLVGMQVNRAVPLGTTLMPDMVKN 62 (64) T ss_dssp CEEEESSCBCTTCBCCGGGEEEECCSSCCSB---GGGHHHHTTCBBSSCBCTTCBCCGGGBTT T ss_pred CCEEEEEECCCCCCCCHHHHCEECCCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCHHHHHH T ss_conf 3158611227877546988402046989989---89999987189840436897216888731 No 7 >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A Probab=97.71 E-value=1.7e-05 Score=48.53 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=48.7 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCC Q ss_conf 888775200489966187437999968201784211586773030121022700001566402 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH 88 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~ 88 (152) ..-+||+++|++|+.|+.+|+...+.....++ ..+.+.++|+.+++++.+|++|+.+|++ T Consensus 290 ~rs~~a~k~i~kG~~i~~~~i~~~Rp~~g~l~---~~~~~~i~Gk~~~~~i~~~~~i~~~di~ 349 (349) T 2wqp_A 290 FASVVADKDIKKGELLSGDNLWVKRPGNGDFS---VNEYETLFGKVAACNIRKGAQIKKTDIE 349 (349) T ss_dssp SCEEEESSCBCTTCBCCTTTEEEESCTTSSSB---GGGGGGGTTCBBSSCBCTTCBCCGGGBC T ss_pred CEEEEEECCCCCCCEECHHHEEEECCCCCCCC---HHHHHHHCCCEECCCCCCCCCCCHHHCC T ss_conf 46899946138898956899578789799849---9999986691775545897968978878 No 8 >3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} Probab=97.63 E-value=3e-05 Score=47.23 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=51.6 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEH-HHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCC Q ss_conf 8887752004899661874379999682-0178421158677303012102270000156640232100379 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTN-SNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRG 96 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~-~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G 96 (152) +.-++|+++|++|+.|+.+|+.+.+... ..++.. +.+.++|+.+++++.+|+||+.+|+++ +.+| T Consensus 279 rrsi~a~k~ikkG~~it~~di~~~rP~~~~gi~~~---~~~~ilgk~~~~~i~~~~~I~~~dle~---~~~~ 344 (350) T 3g8r_A 279 RRGVFATRPVAAGEALTADNVSFAFPPVEGQLTAN---EWSKYVRYTAKTPIAADAPVMAADLEP---VNEG 344 (350) T ss_dssp SCEEEESSCBCTTCBCBTTBEEEEBCCCTTBCBGG---GCCSSCCEEESSCBCTTCBCBGGGEEE---C--- T ss_pred EEEEEEECCCCCCCEECHHHEEEECCCCCCCCCHH---HHHHHCCEEECCCCCCCCCCCHHHHHH---HCCC T ss_conf 36899937338889934888248778998996989---999865904746558969479899355---4167 No 9 >1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 Probab=97.30 E-value=0.00018 Score=42.91 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=47.5 Q ss_pred EEEEEEEEECCCCCCCCHHHEEEEEEEH--HHCCCCCCCCHHHHH-CEEEECCCCCCCCCCHHHCCC Q ss_conf 8887752004899661874379999682--017842115867730-301210227000015664023 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESRLKEMQVTN--SNIRGNYAHSIKDVV-GLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~Dl~~~~~~~--~~~~~~~~~~~~~~i-G~~a~r~i~~G~~i~~~~l~~ 89 (152) ..-++|+++|++|+.|+.+|+...+.-. ..++ -...+.++ |+.+++++.+|++|+.+|+.. T Consensus 315 rrsi~a~~~i~kG~~i~~~di~~~RPg~~~~Gi~---~~~~~~ii~Gk~~~~di~~~~~I~~~di~~ 378 (385) T 1vli_A 315 YRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLH---PRFFELLTSGVRAVRDIPADTGIVWDDILL 378 (385) T ss_dssp SCEEEESSCBCTTCBCCTTTEEEECCTTSCCCBC---GGGHHHHHTTCBCSSCBCTTCBCCGGGTSC T ss_pred CEEEEEECCCCCCCEECHHHEEEECCCCCCCCCC---HHHHHHHHCCCEEECCCCCCCCCCHHHHCC T ss_conf 5799990512889897589946868778888879---899999867969906469979868999166 No 10 >3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str} Probab=87.95 E-value=0.059 Score=29.06 Aligned_cols=79 Identities=13% Similarity=0.084 Sum_probs=50.1 Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEE Q ss_conf 78867888775200489966187437999968201784211586773030121022700001566402321003798799 Q gi|254780377|r 21 FASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVR 100 (152) Q Consensus 21 ~~~~~~~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~ 100 (152) .......|.||.++|++|+.+..++.... +.+.=..-.+.|.++|.+|++|. +-|+ T Consensus 26 ~l~p~DNVaVAl~dl~~G~~v~~~~~~i~-----------l~~~Ip~GHKiAl~dI~~Ge~Ii----------KYG~--- 81 (105) T 3k3s_A 26 KIHALDNVAVALADLAEGTEVSVDNQTVT-----------LRQDVARGHKFALTDIAKGANVI----------KYGL--- 81 (105) T ss_dssp CCSTTCSEEEESSCBCTTCEEEETTEEEE-----------CSSCBCTTCEEESSCBCTTCEEE----------ETTE--- T ss_pred EECCCCCEEEECCCCCCCCEEEECCEEEE-----------ECCCCCCCCEEEEEECCCCCEEE----------ECCC--- T ss_conf 83899989996763699999955991799-----------88668888999841037999759----------9995--- Q ss_pred EEEECCCEEEEEEEEECCCCCCCCEEEEEECCCC Q ss_conf 9997697899999999244888977999988998 Q gi|254780377|r 101 IILTQGNMTISTAGIALSDASIGDVIAVKNIDTG 134 (152) Q Consensus 101 i~~~~g~~~i~~~g~Al~~g~~Gd~IrV~N~~S~ 134 (152) .-|.|.++=..|+.|-+.|+.|+ T Consensus 82 -----------~IG~A~~dI~~Ge~VH~hNvksn 104 (105) T 3k3s_A 82 -----------PIGYALADIAAGEHVHAHNTRTN 104 (105) T ss_dssp -----------EEEEESSCBCTTCEESTTTEEEC T ss_pred -----------EEEEECCCCCCCCEEECCCCCCC T ss_conf -----------93888152578889874001368 No 11 >2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A Probab=84.13 E-value=0.63 Score=23.36 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=41.0 Q ss_pred EHHHCCCCCCCCHHHHHCEEEEC--CCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEE Q ss_conf 82017842115867730301210--2270000156640232100379879999976-9789999 Q gi|254780377|r 52 TNSNIRGNYAHSIKDVVGLVTRR--VLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTIST 112 (152) Q Consensus 52 ~~~~~~~~~~~~~~~~iG~~a~r--~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~ 112 (152) .......+++....-++...+.+ +|.+|+.|..-....+..++.||.+.+.+.+ |.++++. T Consensus 203 ~~~~~~g~P~~~l~wL~n~l~~~g~~L~aGdiV~TGt~~~~~~v~~Gd~~~~~~~gLG~v~~~f 266 (267) T 2eb4_A 203 VAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRF 266 (267) T ss_dssp EGGGTTTSTTHHHHHHHHHHGGGTCCBCTTCEEECCCSSCCEECCTTCEEEEECGGGCEEEEEE T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEECCCCEEEEEE T ss_conf 2534447989999999999997299989999998998988888899989999984687699997 No 12 >2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A Probab=71.85 E-value=1.8 Score=20.91 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=40.4 Q ss_pred CCCCCCHHHHHCEEEE--CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEEE Q ss_conf 4211586773030121--02270000156640232100379879999976-9789999999 Q gi|254780377|r 58 GNYAHSIKDVVGLVTR--RVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAGI 115 (152) Q Consensus 58 ~~~~~~~~~~iG~~a~--r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g~ 115 (152) .+++....-++.+.+. ..|.+|++|..-..-.+..++.||.+.+.+.+ |.++++.... T Consensus 203 ~~P~~al~wL~~~l~~~g~~L~~G~iV~TGs~~~~~~i~~Gd~v~~~f~glG~v~~~f~~~ 263 (270) T 2wqt_A 203 GHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSSA 263 (270) T ss_dssp TSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCEECCTTCEEEEEETTTEEEEEEECC- T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEECCCCEEEEEEECC T ss_conf 4679999999999997599879999998997888878899989999984783799999627 No 13 >2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Probab=63.59 E-value=5.8 Score=18.03 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=37.6 Q ss_pred HHHCCCCCCCCCCCEEEEEEE--CCC---EE-EEEEEEECCCCCCCCEEEEEECCCCC Q ss_conf 664023210037987999997--697---89-99999992448889779999889988 Q gi|254780377|r 84 LSVLHRPYVISRGAKVRIILT--QGN---MT-ISTAGIALSDASIGDVIAVKNIDTGV 135 (152) Q Consensus 84 ~~~l~~~~~V~~G~~V~i~~~--~g~---~~-i~~~g~Al~~g~~Gd~IrV~N~~S~k 135 (152) ...++.-|.++.||+|.+.+. .|+ ++ ...-.+|..+..++..+.|||...|- T Consensus 18 ~~~~k~iP~f~~GDtv~V~~~i~Eg~k~RiQ~FeGvvIa~~~~g~~stftvRki~~G~ 75 (166) T 2zjr_M 18 QDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGE 75 (166) T ss_dssp GGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTE T ss_pred HHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEECCC T ss_conf 9847789984899899999997268840513677999998279987538868885485 No 14 >1nr9_A Protein YCGM; structural genomics, putative isomerase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.70A {Escherichia coli} SCOP: d.177.1.1 Probab=46.72 E-value=6.7 Score=17.70 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=34.8 Q ss_pred CCCCCCCHHHHHCEEE-ECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC Q ss_conf 8421158677303012-102270000156640232100379879999976 Q gi|254780377|r 57 RGNYAHSIKDVVGLVT-RRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ 105 (152) Q Consensus 57 ~~~~~~~~~~~iG~~a-~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~ 105 (152) .++++.+..+++-... ..+|.+|.+|..---...-.++.||.|.+.+.+ T Consensus 164 t~~Mi~~~~elI~~lS~~~tL~pGDvI~TGTP~Gvg~l~~GD~v~~~ieG 213 (223) T 1nr9_A 164 TADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDG 213 (223) T ss_dssp GGGBSSCHHHHHHHHTTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETT T ss_pred HHHCCCCHHHHHHHHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEEEC T ss_conf 67303189999999868872699988991998987178999999999989 No 15 >2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Probab=34.36 E-value=21 Score=14.97 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=32.4 Q ss_pred CCCCCCCEEEEEEECCC-----EEEEEEEEECCCCCCCCEEEEEECCCCCEE Q ss_conf 10037987999997697-----899999999244888977999988998889 Q gi|254780377|r 91 YVISRGAKVRIILTQGN-----MTISTAGIALSDASIGDVIAVKNIDTGVMV 137 (152) Q Consensus 91 ~~V~~G~~V~i~~~~g~-----~~i~~~g~Al~~g~~Gd~IrV~N~~S~k~v 137 (152) |.++-||.|.+.+.... =....-.+|..+..++..+.+||..+|--+ T Consensus 2 P~f~~GD~v~V~~~~~e~k~r~q~f~GvvI~~~~~g~~stftlR~v~~g~GV 53 (98) T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGV 53 (98) T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEEEEEEECCCCE T ss_conf 9647999999999988887588668999999838987059999884079648 No 16 >3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} Probab=32.42 E-value=23 Score=14.79 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=42.0 Q ss_pred CCCCCCCHHHHHCEEEE-CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEEC-CCEEEEEEEEE Q ss_conf 84211586773030121-02270000156640232100379879999976-97899999999 Q gi|254780377|r 57 RGNYAHSIKDVVGLVTR-RVLLPDHVIPLSVLHRPYVISRGAKVRIILTQ-GNMTISTAGIA 116 (152) Q Consensus 57 ~~~~~~~~~~~iG~~a~-r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~-g~~~i~~~g~A 116 (152) ..+++.+..+++-...+ .+|.+|.+|..---...-.++.||.+.+..+. +.+.++.+|+. T Consensus 162 t~~mi~~~~elia~lS~~~tL~pGDvI~TGTP~Gvg~l~~GD~~~~~i~~~~~~~~ti~giv 223 (224) T 3l53_A 162 SAEMLFPILPLIAHMSEHFSLQPGDVILTGTPAGVGPLEVGDSLSAKLSLEDNVLLTCDGVV 223 (224) T ss_dssp GGGCSSCHHHHHHHHHHHSCBCTTCEEECCCCSCCEECCTTCEEEEEEEETTEEEEEEEEEE T ss_pred HHHCCCCHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEE T ss_conf 88503589999999868861699948992888987517899999999988998999998898 No 17 >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Probab=28.27 E-value=18 Score=15.38 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.6 Q ss_pred EEEEEEEEEECCCCCCCC Q ss_conf 788877520048996618 Q gi|254780377|r 25 IGHAVVPSVVINAGEVLN 42 (152) Q Consensus 25 ~~~vvVa~r~I~~G~~I~ 42 (152) .+--+.|+++|++|+.|. T Consensus 40 kG~GlfA~~~I~kg~~I~ 57 (166) T 3f9x_A 40 KGRGVIATKQFSRGDFVV 57 (166) T ss_dssp TEEEEEESSCBCTTCEEE T ss_pred CCCEEEECCCCCCCCEEE T ss_conf 736898898108999999 No 18 >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* Probab=24.79 E-value=21 Score=14.91 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=16.2 Q ss_pred EEEEEEEEEECCCCCCCCHHH Q ss_conf 788877520048996618743 Q gi|254780377|r 25 IGHAVVPSVVINAGEVLNESR 45 (152) Q Consensus 25 ~~~vvVa~r~I~~G~~I~~~D 45 (152) .+--+.|+++|++|+.|..-. T Consensus 14 ~G~GvfA~~~i~~g~~i~~~~ 34 (119) T 1n3j_A 14 GGYGVFARKSFEKGELVEECL 34 (119) T ss_dssp SCCEEEECCCBCSCEEECCCC T ss_pred CCEEEEECCHHHCCCEECCCC T ss_conf 830898894452686552444 No 19 >3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} Probab=24.05 E-value=32 Score=13.94 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=23.9 Q ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCCCCC---EEEEEECCCCCEEEEEEEECCEEEE Q ss_conf 03798799999769789999999924488897---7999988998889999972998999 Q gi|254780377|r 93 ISRGAKVRIILTQGNMTISTAGIALSDASIGD---VIAVKNIDTGVMVSGSVVDTGTVRV 149 (152) Q Consensus 93 V~~G~~V~i~~~~g~~~i~~~g~Al~~g~~Gd---~IrV~N~~S~k~v~g~V~~~~~V~V 149 (152) +++|..+.+ .|......+-.-...|..|. .++.+|+-+|+++.-+..+.-++++ T Consensus 12 lkkG~~i~~---~G~p~~V~~~~~~kpgk~G~a~v~~k~knl~tG~~~e~t~~~~d~ve~ 68 (138) T 3cpf_A 12 LRKNGFVVL---KGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDV 68 (138) T ss_dssp CCTTSEEEE---TTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEE T ss_pred CCCCCEEEE---CCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEE T ss_conf 767899999---999999999999868678766999999997899999998569969987 No 20 >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Probab=22.44 E-value=27 Score=14.35 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=16.0 Q ss_pred EEEEEEEEEEECCCCCCCCHH Q ss_conf 678887752004899661874 Q gi|254780377|r 24 VIGHAVVPSVVINAGEVLNES 44 (152) Q Consensus 24 ~~~~vvVa~r~I~~G~~I~~~ 44 (152) ..+..+||+|+|++|++|=.+ T Consensus 16 ~kGR~lvAtrdi~~Ge~il~e 36 (490) T 3n71_A 16 GKGRGLKATKEFWAADVIFAE 36 (490) T ss_dssp SSCEEEEESSCBCTTCEEEEE T ss_pred CCCCEEEECCCCCCCCEEEEE T ss_conf 983479889745989999990 No 21 >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Probab=21.96 E-value=25 Score=14.58 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=13.8 Q ss_pred EEEEEEEEECCCCCCCC Q ss_conf 88877520048996618 Q gi|254780377|r 26 GHAVVPSVVINAGEVLN 42 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~ 42 (152) +--+.|+++|++|+.|. T Consensus 63 G~GlFA~~~I~kG~~I~ 79 (192) T 2w5y_A 63 GRGLFCKRNIDAGEMVI 79 (192) T ss_dssp SEEEEESSCBCTTCEEE T ss_pred CCEEEECCCCCCCCEEE T ss_conf 81782898249999999 No 22 >3pdn_A SET and MYND domain-containing protein 3; rossmann fold, zinc finger, methyltransferase, transferase, transferase-transferase inhibitor complex; HET: SFG; 1.70A {Homo sapiens} PDB: 3mek_A* Probab=21.27 E-value=28 Score=14.30 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.3 Q ss_pred EEEEEEEEEEECCCCCCCC Q ss_conf 6788877520048996618 Q gi|254780377|r 24 VIGHAVVPSVVINAGEVLN 42 (152) Q Consensus 24 ~~~~vvVa~r~I~~G~~I~ 42 (152) ..+..++|+|+|++|++|= T Consensus 13 ~~GRgl~A~rdi~~GevI~ 31 (428) T 3pdn_A 13 NRGNGLRAVTPLRPGELLF 31 (428) T ss_dssp SSSEEEEESSCBCTTCEEE T ss_pred CCCCEEEECCCCCCCCEEE T ss_conf 9988898898669899999 No 23 >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Probab=20.20 E-value=28 Score=14.25 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.2 Q ss_pred EEEEEEEEEECCCCCCCC Q ss_conf 788877520048996618 Q gi|254780377|r 25 IGHAVVPSVVINAGEVLN 42 (152) Q Consensus 25 ~~~vvVa~r~I~~G~~I~ 42 (152) .+--+.|+++|++|+.|- T Consensus 143 kG~Gv~a~~~I~kG~~I~ 160 (302) T 1ml9_A 143 RGWGVKCPVNIKRGQFVD 160 (302) T ss_dssp SCEEEECSSCBCTTCEEE T ss_pred CCCEEEECCCCCCCCEEE T ss_conf 523796797638999999 Done!