HHSEARCH alignment of GI: 254780377 and SCOP domain: d1ucsa_

Alignment

Probab=97.44  E-value=5.3e-05  Score=44.55  Aligned_cols=60  Identities=22%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC
Q ss_conf             887752004899661874379999682017842115867730301210227000015664023
Q gi|254780377|r   27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR   89 (152)
Q Consensus        27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~   89 (152)
                      .-+||++.|+.|+.|+.+|++.+-..-..+|   ..+..+++|++..+++..|++|..+|++.
T Consensus         3 ~SVVA~q~ip~gt~LT~~mm~~KV~eP~Gip---ae~~~~iVGkqvn~~V~edetim~~mvk~   62 (64)
T d1ucsa_           3 ASVVANQLIPINTALTLIMMKAEVVTPMGIP---AEEIPKLVGMQVNRAVPLGTTLMPDMVKN   62 (64)
T ss_dssp             CEEEESSCBCTTCBCCGGGEEEECCSSCCSB---GGGHHHHTTCBBSSCBCTTCBCCGGGBTT
T ss_pred             CCEEEEEEECCCCCCCHHHHHEEECCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             4157741207875434767412312788889---89999987488710516898533665630

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Type III antifreeze protein, AFP III
species: Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201]