HHSEARCH alignment of GI: 254780377 and SCOP domain: d2zdra1

Alignment

Probab=97.97  E-value=2e-06  Score=52.34  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=47.8

Q ss_pred             EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCC
Q ss_conf             8775200489966187437999968201784211586773030121022700001566402
Q gi|254780377|r   28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH   88 (152)
Q Consensus        28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~   88 (152)
                      -+||+++|.+|++|+.+|+.+.+-....++   ..+.++++|+.+.+++.+|++|..+|++
T Consensus        11 Siva~~~I~kG~~i~~~dl~~~RP~~ggi~---p~~~~~viGk~~~~~i~~~~~I~~~dl~   68 (68)
T d2zdra1          11 SVVADKDIKKGELLSGDNLWVKRPGNGDFS---VNEYETLFGKVAACNIRKGAQIKKTDIE   68 (68)
T ss_dssp             EEEESSCBCTTCBCCTTTEEEESCSCSSSB---GGGGGGGTTCBBSSCBCTTCBCCGGGBC
T ss_pred             EEEECCCCCCCCEECHHHEEEECCCCCCCC---HHHHHHHCCCEECCCCCCCCCCCHHHCC
T ss_conf             489904348999952799679888799489---8599886592264445894928979878

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Capsule biosynthesis protein SiaC, C-terminal domain
species: Neisseria meningitidis [TaxId: 487]