Query gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 152 No_of_seqs 127 out of 709 Neff 7.8 Searched_HMMs 13730 Date Wed Jun 1 03:47:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780377.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1opsa_ b.85.1.1 (A:) Type III 98.1 1.4E-06 1E-10 53.3 4.1 60 28-90 3-62 (64) 2 d2zdra1 b.85.1.1 (A:282-349) C 98.0 2E-06 1.5E-10 52.3 3.3 58 28-88 11-68 (68) 3 d1vlia1 b.85.1.1 (A:297-368) S 97.7 1.2E-05 9E-10 48.0 4.1 60 27-89 8-70 (72) 4 d1ucsa_ b.85.1.1 (A:) Type III 97.4 5.3E-05 3.8E-09 44.6 4.0 60 27-89 3-62 (64) 5 d1sv6a_ d.177.1.1 (A:) 2-keto- 74.4 0.81 5.9E-05 21.4 2.2 65 47-111 191-258 (261) 6 d2zjrm1 b.34.5.6 (M:2-109) Rib 65.0 3 0.00022 18.3 3.5 52 84-135 17-74 (108) 7 d1zq1a1 b.38.3.1 (A:2-75) Glut 54.0 5.8 0.00042 16.7 6.0 60 90-150 8-69 (74) 8 d1nr9a_ d.177.1.1 (A:) Putativ 41.6 4.2 0.00031 17.5 1.1 51 57-107 163-214 (221) 9 d1r3ea1 b.122.1.1 (A:238-318) 31.5 12 0.00087 15.0 2.1 53 68-122 6-58 (81) 10 d1sawa_ d.177.1.1 (A:) FAHD1 ( 23.7 19 0.0014 13.9 2.3 48 57-104 155-203 (217) 11 d2g46a1 b.85.7.2 (A:1-119) Vir 23.6 12 0.00087 15.0 0.9 20 26-45 15-34 (119) 12 d2ey4a1 b.122.1.1 (A:253-336) 22.2 20 0.0015 13.7 3.2 58 71-130 9-73 (84) No 1 >d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]} Probab=98.07 E-value=1.4e-06 Score=53.25 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=50.4 Q ss_pred EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCCC Q ss_conf 877520048996618743799996820178421158677303012102270000156640232 Q gi|254780377|r 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP 90 (152) Q Consensus 28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~~ 90 (152) -+||+++|++|++|+++|+..++..-..++.. +.++++|+.++++|..|++|..+|++.. T Consensus 3 SiVA~~dI~~G~~lt~~~l~~Krp~p~GI~p~---~~~~iIGKk~kkdi~~d~~L~~d~ik~~ 62 (64) T d1opsa_ 3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFA---EMSQLVGKQVNTPVAKGQTLMPNMVKTY 62 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGG---GGGGTTTCBBSSCBCTTCBCCGGGBTTT T ss_pred CEEECCCCCCCCCCCHHHEEEEECCCCCCCHH---HHHHHCCHHHHCCCCCCCCCCHHHHHCC T ss_conf 67867732898892578857871678870988---9999748575233069885189994122 No 2 >d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]} Probab=97.97 E-value=2e-06 Score=52.34 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=47.8 Q ss_pred EEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCC Q ss_conf 8775200489966187437999968201784211586773030121022700001566402 Q gi|254780377|r 28 AVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH 88 (152) Q Consensus 28 vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~ 88 (152) -+||+++|.+|++|+.+|+.+.+-....++ ..+.++++|+.+.+++.+|++|..+|++ T Consensus 11 Siva~~~I~kG~~i~~~dl~~~RP~~ggi~---p~~~~~viGk~~~~~i~~~~~I~~~dl~ 68 (68) T d2zdra1 11 SVVADKDIKKGELLSGDNLWVKRPGNGDFS---VNEYETLFGKVAACNIRKGAQIKKTDIE 68 (68) T ss_dssp EEEESSCBCTTCBCCTTTEEEESCSCSSSB---GGGGGGGTTCBBSSCBCTTCBCCGGGBC T ss_pred EEEECCCCCCCCEECHHHEEEECCCCCCCC---HHHHHHHCCCEECCCCCCCCCCCHHHCC T ss_conf 489904348999952799679888799489---8599886592264445894928979878 No 3 >d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=97.73 E-value=1.2e-05 Score=48.02 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=47.2 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEH--HHCCCCCCCCHHHHH-CEEEECCCCCCCCCCHHHCCC Q ss_conf 887752004899661874379999682--017842115867730-301210227000015664023 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTN--SNIRGNYAHSIKDVV-GLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~--~~~~~~~~~~~~~~i-G~~a~r~i~~G~~i~~~~l~~ 89 (152) .-++|+++|++|++|+.+|+...+.-. ..++ -...++++ |+.+++++.+|++|..+++-. T Consensus 8 RSi~a~kdi~kG~~it~~di~~~RPg~~~~Gi~---p~~~~~ii~Gkk~~~~i~~g~~i~~~di~~ 70 (72) T d1vlia1 8 RGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLH---PRFFELLTSGVRAVRDIPADTGIVWDDILL 70 (72) T ss_dssp CEEEESSCBCTTCBCCTTTEEEECCTTSCCCBC---GGGHHHHHTTCBCSSCBCTTCBCCGGGTSC T ss_pred EEEEEECCCCCCCCCCHHHEEEECCCCCCCCCC---HHHHHHHHCCCEECCCCCCCCCCCHHHCCC T ss_conf 538891422888991678867877888888859---899999767948846338969369999020 No 4 >d1ucsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201]} Probab=97.44 E-value=5.3e-05 Score=44.55 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=50.8 Q ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHHHCCCCCCCCHHHHHCEEEECCCCCCCCCCHHHCCC Q ss_conf 887752004899661874379999682017842115867730301210227000015664023 Q gi|254780377|r 27 HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHR 89 (152) Q Consensus 27 ~vvVa~r~I~~G~~I~~~Dl~~~~~~~~~~~~~~~~~~~~~iG~~a~r~i~~G~~i~~~~l~~ 89 (152) .-+||++.|+.|+.|+.+|++.+-..-..+| ..+..+++|++..+++..|++|..+|++. T Consensus 3 ~SVVA~q~ip~gt~LT~~mm~~KV~eP~Gip---ae~~~~iVGkqvn~~V~edetim~~mvk~ 62 (64) T d1ucsa_ 3 ASVVANQLIPINTALTLIMMKAEVVTPMGIP---AEEIPKLVGMQVNRAVPLGTTLMPDMVKN 62 (64) T ss_dssp CEEEESSCBCTTCBCCGGGEEEECCSSCCSB---GGGHHHHTTCBBSSCBCTTCBCCGGGBTT T ss_pred CCEEEEEEECCCCCCCHHHHHEEECCCCCCC---HHHHHHHHHHHHHCCCCCCCCCCHHHHHH T ss_conf 4157741207875434767412312788889---89999987488710516898533665630 No 5 >d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]} Probab=74.35 E-value=0.81 Score=21.44 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=42.3 Q ss_pred EEEEEEHHHCCCCCCCCHHHHHCEEEE--CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEE-CCCEEEE Q ss_conf 999968201784211586773030121--0227000015664023210037987999997-6978999 Q gi|254780377|r 47 KEMQVTNSNIRGNYAHSIKDVVGLVTR--RVLLPDHVIPLSVLHRPYVISRGAKVRIILT-QGNMTIS 111 (152) Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~iG~~a~--r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~-~g~~~i~ 111 (152) ...+........+++....-++...++ .+|.+|++|..-...++.-++.||.+.+.+. -|.++++ T Consensus 191 ~~~~g~~~~~~g~P~~al~wL~~~l~~~g~~L~~G~iV~TGs~~~~~~i~~Gd~v~~~f~glG~vs~~ 258 (261) T d1sv6a_ 191 EVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAAT 258 (261) T ss_dssp EEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCEECCTTCEEEEEETTTEEEEEE T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEEECCCCEEEEE T ss_conf 58721564566885999999999999749987999999889878887789998999998578479999 No 6 >d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Probab=65.04 E-value=3 Score=18.28 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=37.1 Q ss_pred HHHCCCCCCCCCCCEEEEEEEC--C---CEE-EEEEEEECCCCCCCCEEEEEECCCCC Q ss_conf 6640232100379879999976--9---789-99999992448889779999889988 Q gi|254780377|r 84 LSVLHRPYVISRGAKVRIILTQ--G---NMT-ISTAGIALSDASIGDVIAVKNIDTGV 135 (152) Q Consensus 84 ~~~l~~~~~V~~G~~V~i~~~~--g---~~~-i~~~g~Al~~g~~Gd~IrV~N~~S~k 135 (152) ...++.-|.++.||.|.+.+.. | .+. ...-.+|..++..+..+.|||...|- T Consensus 17 ~~~~k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~ 74 (108) T d2zjrm1 17 QDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGE 74 (108) T ss_dssp GGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTE T ss_pred HHHCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCC T ss_conf 9857679984899899999997589865057888999998278863059989973684 No 7 >d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]} Probab=54.02 E-value=5.8 Score=16.75 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=41.9 Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEEEECCCC--CCCCEEEEEECCCCCEEEEEEEECCEEEEE Q ss_conf 2100379879999976978999999992448--889779999889988899999729989999 Q gi|254780377|r 90 PYVISRGAKVRIILTQGNMTISTAGIALSDA--SIGDVIAVKNIDTGVMVSGSVVDTGTVRVV 150 (152) Q Consensus 90 ~~~V~~G~~V~i~~~~g~~~i~~~g~Al~~g--~~Gd~IrV~N~~S~k~v~g~V~~~~~V~V~ 150 (152) ..-+.-||.|++..+.++=.++.+|..|.+- +-.+.|-++ ++||==+.=.+..-..++++ T Consensus 8 ~~~~~~GD~Vri~~~~~~~~~~~eGilmP~~e~s~~~~ivlK-L~nGYNiGi~~~~i~~ievl 69 (74) T d1zq1a1 8 ERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLK-LENGYNIGIALEKIRRIEVL 69 (74) T ss_dssp HTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEE-ETTSCEEEEEGGGEEEEEEE T ss_pred HCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEE-ECCCEEECCCHHHEEEEEEE T ss_conf 739999998999991488855899998488545899879999-44862241336670489997 No 8 >d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Probab=41.57 E-value=4.2 Score=17.47 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=34.9 Q ss_pred CCCCCCCHHHHHCEEEE-CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCC Q ss_conf 84211586773030121-0227000015664023210037987999997697 Q gi|254780377|r 57 RGNYAHSIKDVVGLVTR-RVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGN 107 (152) Q Consensus 57 ~~~~~~~~~~~iG~~a~-r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~g~ 107 (152) .++++.+..+++-...+ .+|.+|.+|..---...-.++.||.|.+.+.+++ T Consensus 163 t~~Mi~~~~elI~~lS~~~tL~pGDiI~TGTP~Gvg~l~~GD~v~~~ieG~~ 214 (221) T d1nr9a_ 163 TADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHS 214 (221) T ss_dssp GGGBSSCHHHHHHHHTTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETTEE T ss_pred CCCCCCCHHHHHHHHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEEECCE T ss_conf 0034689999999984799789997899589898715899999999998998 No 9 >d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=31.53 E-value=12 Score=14.98 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=39.6 Q ss_pred HCEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC Q ss_conf 0301210227000015664023210037987999997697899999999244888 Q gi|254780377|r 68 VGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASI 122 (152) Q Consensus 68 iG~~a~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~~g~~~i~~~g~Al~~g~~ 122 (152) +...|...|..|..+...-+....-+++||.|.+....|.+ -.-|+|+-+..- T Consensus 6 V~~~A~~~i~~Ga~l~~pGI~~~d~~~~Gd~V~I~~~~g~~--iaiG~a~~~S~e 58 (81) T d1r3ea1 6 VHQESTKMILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRL--LALAEAERNSSF 58 (81) T ss_dssp CCTTTHHHHTTTCCEESSSCCEECCCCTTCEEEEECSSSCE--EEEEEESSCTTC T ss_pred ECCCHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEECCCCE--EEEEEEECCHHH T ss_conf 95125889866975465420454212799989999379977--899998329999 No 10 >d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Probab=23.73 E-value=19 Score=13.90 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=31.0 Q ss_pred CCCCCCCHHHHHCEEE-ECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEE Q ss_conf 8421158677303012-10227000015664023210037987999997 Q gi|254780377|r 57 RGNYAHSIKDVVGLVT-RRVLLPDHVIPLSVLHRPYVISRGAKVRIILT 104 (152) Q Consensus 57 ~~~~~~~~~~~iG~~a-~r~i~~G~~i~~~~l~~~~~V~~G~~V~i~~~ 104 (152) .++++.+..+++-..+ ..+|.+|.+|..---.-...++.||.|.+... T Consensus 155 t~~mi~~~~eli~~lS~~~tL~pGDvI~TGTP~Gvg~l~~GD~v~~~i~ 203 (217) T d1sawa_ 155 TSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIH 203 (217) T ss_dssp GGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCSCCEEECTTCEEEEEET T ss_pred HHHHCCCHHHHHHHHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEEC T ss_conf 6873206999999986896679994898289898753899989999987 No 11 >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Probab=23.61 E-value=12 Score=14.98 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=15.2 Q ss_pred EEEEEEEEECCCCCCCCHHH Q ss_conf 88877520048996618743 Q gi|254780377|r 26 GHAVVPSVVINAGEVLNESR 45 (152) Q Consensus 26 ~~vvVa~r~I~~G~~I~~~D 45 (152) +--+.|+++|++|++|..-. T Consensus 15 G~GvfA~~~i~~g~~i~~~~ 34 (119) T d2g46a1 15 GYGVFARKSFEKGELVEECL 34 (119) T ss_dssp SSCEEECSCBCTTCCCEEEE T ss_pred CEEEEECCHHHCCCEEECCC T ss_conf 40999895243797772442 No 12 >d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=22.20 E-value=20 Score=13.73 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=41.5 Q ss_pred EEECCCCCCCCCCHHHCCC-CCCCCCCCEEEEEEECCCEEEEEEEEECCCC------CCCCEEEEEE Q ss_conf 1210227000015664023-2100379879999976978999999992448------8897799998 Q gi|254780377|r 71 VTRRVLLPDHVIPLSVLHR-PYVISRGAKVRIILTQGNMTISTAGIALSDA------SIGDVIAVKN 130 (152) Q Consensus 71 ~a~r~i~~G~~i~~~~l~~-~~~V~~G~~V~i~~~~g~~~i~~~g~Al~~g------~~Gd~IrV~N 130 (152) .|...|..|..+...-+.. ...+++||.|.+....|.+ -..|+|+-++ ..|..+++++ T Consensus 9 ~A~~ai~~Ga~l~~~GV~~~~~~f~~Gd~V~I~~~~g~~--iavG~a~~ss~ei~~~~kG~av~~~~ 73 (84) T d2ey4a1 9 SAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDEL--VALGKAMMTSQEMLEKTKGIAVDVEK 73 (84) T ss_dssp HHHHHHTTTCCEEGGGEEEEETTCCTTCEEEEEETTSCE--EEEEEESSCHHHHHHCCSSEEEEEEE T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCE--EEEEEEEECHHHHHHHCCCEEEEEEE T ss_conf 199999869984788079972898899999999588755--89999952999998755986999888 Done!