RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} Length = 278 Score = 94.3 bits (234), Expect = 1e-20 Identities = 28/122 (22%), Positives = 57/122 (46%) Query: 29 VVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH 88 VV IN G+V+ E ++ + I G + +VVG ++RR L V+ ++ Sbjct: 146 VVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDVSEVVGKISRRYLKEGTVLTADMVK 205 Query: 89 RPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVR 148 P + +G V + G++ ++T L + +G+ + N+++ V G V +R Sbjct: 206 DPPDVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETVRAMNVESRKYVFGRVERGPVLR 265 Query: 149 VV 150 ++ Sbjct: 266 IL 267 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.1 bits (96), Expect = 1e-04 Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 45/144 (31%) Query: 5 RFLL----FFSLYVLSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQV----TNSNI 56 RFL F S L + V +V NA ++ + V S++ Sbjct: 419 RFLPVASPFHSHL---LVPASDLINKDLVKNNVSFNA------KDIQ-IPVYDTFDGSDL 468 Query: 57 RGNYAHSIKDVVGLVTR-RVLLPD-------HVI---P-----LSVL-HRPYVISRGAKV 99 R + +V + R V H++ P L VL HR G V Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR---NKDGTGV 525 Query: 100 RIILTQGNMTISTAGIALSDASIG 123 R+I+ G + I+ D G Sbjct: 526 RVIVA-GTLDINP------DDDYG 542 >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Length = 278 Score = 30.1 bits (67), Expect = 0.20 Identities = 14/73 (19%), Positives = 24/73 (32%) Query: 38 GEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGA 97 G ++ R V YA S V + + P +PYV+S Sbjct: 165 GVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMER 224 Query: 98 KVRIILTQGNMTI 110 K+ +I + + Sbjct: 225 KIEVIAEKAIVVA 237 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 29.9 bits (67), Expect = 0.23 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 16/66 (24%) Query: 85 SVLHRPYVISRGAKVRIILT-----QGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSG 139 S+ R RG + I+LT I S GDV+ G+++S Sbjct: 6 SIDKRA--GRRGPNLNIVLTCPECKVYPPKIVE------RFSEGDVVCA---LCGLVLSD 54 Query: 140 SVVDTG 145 +VDT Sbjct: 55 KLVDTR 60 >2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina} Length = 249 Score = 26.9 bits (59), Expect = 2.0 Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 10 FSLYVLSLDSLFASVIGHAVVPSVVIN 36 + +L L SV+GH V + IN Sbjct: 3 SCAILAALGCLAGSVLGHGQVQNFTIN 29 >1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3 Length = 191 Score = 25.8 bits (56), Expect = 4.4 Identities = 6/26 (23%), Positives = 14/26 (53%) Query: 92 VISRGAKVRIILTQGNMTISTAGIAL 117 + + + I++ GN+ + AG+ L Sbjct: 12 ICAIAVMITIVMGNGNVRTNQAGLEL 37 >1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2 Length = 340 Score = 25.3 bits (55), Expect = 5.6 Identities = 6/24 (25%), Positives = 10/24 (41%) Query: 86 VLHRPYVISRGAKVRIILTQGNMT 109 V I +G V +++ NM Sbjct: 279 VFKGAVKIRKGQAVTLMMDATNMP 302 >2c3f_A HYLP1, hyaluronidase, phage associated; lyase, hyaluronan lyase, phage tail fibre, triple-stranded beta- helix, scarlet fever; 1.81A {Streptococcus pyogenes} SCOP: b.108.1.5 PDB: 2yvv_A* 2yw0_A 2yx2_A 2pk1_A* 3eka_A* 2dp5_A Length = 358 Score = 24.9 bits (54), Expect = 7.3 Identities = 12/44 (27%), Positives = 19/44 (43%) Query: 69 GLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTIST 112 GLV R + IPL V + + A+ +IL + + T Sbjct: 13 GLVPRGSHMSSENIPLRVQFKRMKAAEWARSDVILLESEIGFET 56 >2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Score = 24.9 bits (54), Expect = 8.3 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%) Query: 60 YAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP---YVISRGAKVRIILTQGNMTI 110 H++ + + T R L H P+ L P ++ + R L + I Sbjct: 516 NTHAVVEPFVIATNRHLSVVH--PIYKLLFPHYRDTMNINSLARKSLVNADGII 567 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.379 Gapped Lambda K H 0.267 0.0554 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,191,363 Number of extensions: 48559 Number of successful extensions: 143 Number of sequences better than 10.0: 1 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 16 Length of query: 152 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 68 Effective length of database: 3,656,734 Effective search space: 248657912 Effective search space used: 248657912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (24.2 bits)