RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring
biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str.
psy62]
         (152 letters)



>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2,
           protein structure initiative; 2.05A {Thermotoga
           maritima}
          Length = 278

 Score = 94.3 bits (234), Expect = 1e-20
 Identities = 28/122 (22%), Positives = 57/122 (46%)

Query: 29  VVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLH 88
           VV    IN G+V+ E  ++  +     I G     + +VVG ++RR L    V+   ++ 
Sbjct: 146 VVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDVSEVVGKISRRYLKEGTVLTADMVK 205

Query: 89  RPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVVDTGTVR 148
            P  + +G  V   +  G++ ++T    L +  +G+ +   N+++   V G V     +R
Sbjct: 206 DPPDVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETVRAMNVESRKYVFGRVERGPVLR 265

Query: 149 VV 150
           ++
Sbjct: 266 IL 267


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 45/144 (31%)

Query: 5   RFLL----FFSLYVLSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQV----TNSNI 56
           RFL     F S     L      +    V  +V  NA        ++ + V      S++
Sbjct: 419 RFLPVASPFHSHL---LVPASDLINKDLVKNNVSFNA------KDIQ-IPVYDTFDGSDL 468

Query: 57  RGNYAHSIKDVVGLVTR-RVLLPD-------HVI---P-----LSVL-HRPYVISRGAKV 99
           R       + +V  + R  V           H++   P     L VL HR      G  V
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR---NKDGTGV 525

Query: 100 RIILTQGNMTISTAGIALSDASIG 123
           R+I+  G + I+       D   G
Sbjct: 526 RVIVA-GTLDINP------DDDYG 542


>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
           structural genomics, NADP, PSI, protein structure
           initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
           SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
          Length = 278

 Score = 30.1 bits (67), Expect = 0.20
 Identities = 14/73 (19%), Positives = 24/73 (32%)

Query: 38  GEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGA 97
           G  ++  R     V        YA S    V        +   + P     +PYV+S   
Sbjct: 165 GVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMER 224

Query: 98  KVRIILTQGNMTI 110
           K+ +I  +  +  
Sbjct: 225 KIEVIAEKAIVVA 237


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 29.9 bits (67), Expect = 0.23
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 16/66 (24%)

Query: 85  SVLHRPYVISRGAKVRIILT-----QGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSG 139
           S+  R     RG  + I+LT          I          S GDV+       G+++S 
Sbjct: 6   SIDKRA--GRRGPNLNIVLTCPECKVYPPKIVE------RFSEGDVVCA---LCGLVLSD 54

Query: 140 SVVDTG 145
            +VDT 
Sbjct: 55  KLVDTR 60


>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea
          jecorina}
          Length = 249

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 10 FSLYVLSLDSLFASVIGHAVVPSVVIN 36
              + +L  L  SV+GH  V +  IN
Sbjct: 3  SCAILAALGCLAGSVLGHGQVQNFTIN 29


>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A
           {Enterobacteria phage P1} SCOP: d.2.1.3
          Length = 191

 Score = 25.8 bits (56), Expect = 4.4
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 92  VISRGAKVRIILTQGNMTISTAGIAL 117
           + +    + I++  GN+  + AG+ L
Sbjct: 12  ICAIAVMITIVMGNGNVRTNQAGLEL 37


>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold,
           all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP:
           a.128.1.2
          Length = 340

 Score = 25.3 bits (55), Expect = 5.6
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 86  VLHRPYVISRGAKVRIILTQGNMT 109
           V      I +G  V +++   NM 
Sbjct: 279 VFKGAVKIRKGQAVTLMMDATNMP 302


>2c3f_A HYLP1, hyaluronidase, phage associated; lyase, hyaluronan lyase,
           phage tail fibre, triple-stranded beta- helix, scarlet
           fever; 1.81A {Streptococcus pyogenes} SCOP: b.108.1.5
           PDB: 2yvv_A* 2yw0_A 2yx2_A 2pk1_A* 3eka_A* 2dp5_A
          Length = 358

 Score = 24.9 bits (54), Expect = 7.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 69  GLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTIST 112
           GLV R   +    IPL V  +    +  A+  +IL +  +   T
Sbjct: 13  GLVPRGSHMSSENIPLRVQFKRMKAAEWARSDVILLESEIGFET 56


>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase,
           soybean lipoxygenase-B, fatty acid biosynthesis, lipid
           synthesis; 2.4A {Glycine max}
          Length = 853

 Score = 24.9 bits (54), Expect = 8.3
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 60  YAHSIKDVVGLVTRRVLLPDHVIPLSVLHRP---YVISRGAKVRIILTQGNMTI 110
             H++ +   + T R L   H  P+  L  P     ++  +  R  L   +  I
Sbjct: 516 NTHAVVEPFVIATNRHLSVVH--PIYKLLFPHYRDTMNINSLARKSLVNADGII 567


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.138    0.379 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,191,363
Number of extensions: 48559
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 16
Length of query: 152
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 68
Effective length of database: 3,656,734
Effective search space: 248657912
Effective search space used: 248657912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)