RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Length = 249 Score = 27.8 bits (61), Expect = 0.38 Identities = 12/62 (19%), Positives = 20/62 (32%) Query: 49 MQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNM 108 V YA S V + + P +PYV+S K+ +I + + Sbjct: 147 FIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIAEKAIV 206 Query: 109 TI 110 Sbjct: 207 VA 208 >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 234 Score = 26.1 bits (57), Expect = 1.4 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 16/122 (13%) Query: 21 FASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIK------------DVV 68 F + P + + + +K V G +K + Sbjct: 50 FRCA---VLTPVYTVKISGLAEKLGVKLCSVIGFP-LGQAPLEVKLVEAQTVLEAGATEL 105 Query: 69 GLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIGDVIAV 128 +V L P+ V S GA V++IL T + + + V Sbjct: 106 DVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIV 165 Query: 129 KN 130 K Sbjct: 166 KT 167 >d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac {Actinomadura sp. [TaxId: 1989]} Length = 467 Score = 24.9 bits (53), Expect = 3.1 Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 97 AKVRIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142 + IL + + +G+ + D + G+ + ++ ++ S + Sbjct: 7 EDIDAILEDPALEGAVSGVVVVDTATGEELYSRDGGEQ-LLPASNM 51 >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Length = 263 Score = 24.8 bits (53), Expect = 3.1 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 4/85 (4%) Query: 62 HSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDAS 121 G + L+ + + + RG +LT + G++ S A Sbjct: 135 ICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDP----TMGGVSASFAM 190 Query: 122 IGDVIAVKNIDTGVMVSGSVVDTGT 146 +GD+ + V++ Sbjct: 191 LGDLNIAEPKALIGFAGPRVIEQTV 215 >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 471 Score = 24.7 bits (52), Expect = 3.7 Identities = 8/44 (18%), Positives = 12/44 (27%) Query: 80 HVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDASIG 123 H+IPL + V G V ++ L Sbjct: 14 HLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSS 57 >d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus subtilis [TaxId: 1423]} Length = 458 Score = 24.5 bits (52), Expect = 4.7 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 100 RIILTQGNMTISTAGIALSDASIGDVIAVKNIDTGVMVSGSVV 142 +I+ + + AGI + A G V+ + DT M S + Sbjct: 9 KILADHPALEGAMAGITVRSAETGAVLYEHSGDTR-MRPASSL 50 >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 333 Score = 24.3 bits (52), Expect = 5.4 Identities = 6/24 (25%), Positives = 10/24 (41%) Query: 86 VLHRPYVISRGAKVRIILTQGNMT 109 V I +G V +++ NM Sbjct: 272 VFKGAVKIRKGQAVTLMMDATNMP 295 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.138 0.379 Gapped Lambda K H 0.267 0.0389 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 514,079 Number of extensions: 21074 Number of successful extensions: 51 Number of sequences better than 10.0: 1 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 8 Length of query: 152 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 74 Effective length of database: 1,336,656 Effective search space: 98912544 Effective search space used: 98912544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 49 (23.6 bits)