BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring
biosynthesis protein FlgA [Candidatus Liberibacter asiaticus str.
psy62]
         (152 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780377|ref|YP_003064790.1| flagellar basal body P-ring biosynthesis protein FlgA [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 152

 Score =  299 bits (765), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MDCVRFLLFFSLYVLSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNY 60
           MDCVRFLLFFSLYVLSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNY
Sbjct: 1   MDCVRFLLFFSLYVLSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNY 60

Query: 61  AHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDA 120
           AHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDA
Sbjct: 61  AHSIKDVVGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRIILTQGNMTISTAGIALSDA 120

Query: 121 SIGDVIAVKNIDTGVMVSGSVVDTGTVRVVVK 152
           SIGDVIAVKNIDTGVMVSGSVVDTGTVRVVVK
Sbjct: 121 SIGDVIAVKNIDTGVMVSGSVVDTGTVRVVVK 152


>gi|254780977|ref|YP_003065390.1| putative glutamyl-tRNA(Gln) amidotransferase subunit C protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 95

 Score = 28.1 bits (61), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 81  VIPLSVLHRPYVISRGAKVRIILTQG 106
           V+P+ ++HRP V+  G KV  IL+  
Sbjct: 55  VVPMKMVHRPDVVCDGDKVESILSNA 80


>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 325

 Score = 25.8 bits (55), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 19/74 (25%)

Query: 27  HAVVPSVVINAGEVLNESRLKEMQVTNSNIRGNYAHSIKDVVGLVTRRVLLPDHVIPLS- 85
           H  +  + I AG++          + N+NI+       KD + L       PDH++P S 
Sbjct: 51  HETLTDIAIQAGDI---------ALRNANIK-------KDSISLTLLATSTPDHLLPPSS 94

Query: 86  --VLHRPYVISRGA 97
             + HR  ++  GA
Sbjct: 95  PLITHRLGLMQSGA 108


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 22.3 bits (46), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 62  HSIKDV---VGLVTRRVLLPDHVIPLSVLHRPYVISRGAKVRI--ILTQGNMTISTA 113
           H+IK     +G +   V +  H I  + L+  YVI  G K +I  I   GN   S A
Sbjct: 154 HNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHA 210


>gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 316

 Score = 21.6 bits (44), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 10  FSLYVLSLDSLFASVIGHAVVPSVVINAGEVLNESRLKEMQ 50
           F +Y L     F +   + V P + +  G V  + RL  +Q
Sbjct: 107 FFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQ 147


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
           ABC transporter protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 240

 Score = 21.6 bits (44), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 55  NIRGNYAHSIKDVVGLVTRRVLL 77
           N+ G Y  +IKD+ G   +R LL
Sbjct: 115 NLIGKYNRNIKDLSGGEFQRALL 137


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,560
Number of Sequences: 1233
Number of extensions: 3511
Number of successful extensions: 14
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 12
length of query: 152
length of database: 328,796
effective HSP length: 67
effective length of query: 85
effective length of database: 246,185
effective search space: 20925725
effective search space used: 20925725
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 34 (17.7 bits)