254780378

flagellar basal body rod protein FlgG

GeneID in NCBI database:	8209363	Locus tag:	CLIBASIA_01315
Protein GI in NCBI database:	254780378	Protein Accession:	YP_003064791.1
Gene range:	-(275260, 276048)	Protein Length:	262aa
Gene description:	flagellar basal body rod protein FlgG
COG prediction:	[N] Flagellar basal body rod protein
KEGG prediction:	flgG; flagellar basal body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG
SEED prediction:	Flagellar basal-body rod protein FlgG
Pathway involved in KEGG:	Flagellar assembly [PATH:las02040]
Subsystem involved in SEED:	- none -
sequence	sequence profile

Prediction of Local Sequence Properties

Source	Summary	Result

	scaler
NCBI Database	sequence
PSIPRED	secondary structure
SSPRO	secondary structure
DISEMBL	coil and loop
DISEMBL	flexible loop
SEG	low complexity
DISOPRED	disordered
DISEMBL	missing residues
DISPRO	disordered
TMHMM	none TM-Helix
TOPPRED	none TM-Helix
HMMTOP	none TM-Helix
MEMSAT	none TM-Helix
MEMSAT_SVM	none TM-Helix
PHOBIUS	1 TM-Helix
SignalP_HMM	no
SignalP_NN	no
COILS	coiled coil
70% MSA	conservation map
90% MSA	conservation map

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--

MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR

ccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccEEEccccEEEEEEccEEEEEEcccccEEEEEcccccccccccEEcccccEEccccccccccccEEEcccccEEEEcccccccccEEEEEEEccccHHHHEEccccEEEEcccccccccccccccccEEEEccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

ccHHHHHHccccHHHccHHHHHccHHccccccccccHHHHHHHHHHHHcccccccccccccEcccccEEccccEEEEEEEEccccccccccccccEEEEcccEEEEEcccccEEEEccccEEEcccccEEcccccEccccEEcccccEEEEEccccEEEEEEccccccEEEEEEEEEcccccccccccccccEEcccccccccccccccccccEEccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEkvagspsqsadkavvpegisigsgvqiSSVRNVYtqgevvhtgnnlDLALVgrgwfqvetpdktvmytragsfnidskgqlvtadgntlvpgivipeetreikvsrsgqilavtgknsdfqpVGQLLIANFINEaglrnigdnllartsvsgdpiisnpddigfAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR

MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVagspsqsadkAVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGsfnidskgqlvtadgntlvpgivipeetreikvsrSGQILAvtgknsdfqpVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR

MKAFMIAAAGMSAQQTNLEiiannianinTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEgisigsgvqissvRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR

MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQA******************GISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR

MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAE************AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR

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SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

Identity	Alignment graph	Length	Definition	E-value
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
254780525		421	flagellar hook protein FlgE [Candidatus Liberibact	1e-15
254780525		421	flagellar hook protein FlgE [Candidatus Liberibact	8e-10
254780685		243	flagellar basal body rod protein FlgF [Candidatus	2e-13
254780380		134	flagellar basal body rod protein FlgC [Candidatus	0.009

>gi\|254780525\|ref\|YP_003064938.1\| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421	Back alignment

 Score = 75.1 bits (183), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 16/132 (12%)

Query: 7   AAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEG 66
           A +GM AQ   +  +++NIAN++T GYKR    F+  ++        PS S         
Sbjct: 10  AMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY------ 55

Query: 67  ISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSK 126
             +  G++IS+   +  QG ++HT +N DLA+ G+G+F V+  D     TRAG F+I+++
Sbjct: 56  --VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113

Query: 127 GQLVTADGNTLV 138
           G L    G  L+
Sbjct: 114 GFLENVAGGVLL 125

>gi\|254780525\|ref\|YP_003064938.1\| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421	Back alignment

 Score = 55.8 bits (133), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 117 RAGSFNIDSKG--QLVTAD--GNTLVPGIVIPEET----------REIKVSRSGQILAVT 162
           +A SFN ++ G  Q +T D    T + G  IP+++          ++  VS+ G +  + 
Sbjct: 262 KAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIY 321

Query: 163 GKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222
              +   P+ +L IA   +E  L+    N    T  SGD  I  P       +  G LE 
Sbjct: 322 DDGTRV-PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALET 380

Query: 223 SNVDAVKEISEMISAQRAYEMNSKVIE-AADEMSSLITKMR 262
           +NVD   E++E+I AQR Y +NSKV +  +D M  LI+  R
Sbjct: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421

>gi\|254780685\|ref\|YP_003065098.1\| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243	Back alignment

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 32/252 (12%)

Query: 3   AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAV 62
           +F I  A   A +  L  +A+N++N +T G++  + +F++       V G+     D+ +
Sbjct: 4   SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKI 56

Query: 63  VPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFN 122
                 + SG +  S + V   G  + TG  LD AL G  WF +E+P + ++ TR G F 
Sbjct: 57  S----FVASGKEYLS-KEV---GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFK 107

Query: 123 IDSKGQLVTADGNTLVPGIV-IPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFIN 181
           +   G LV+A G   V  +  +P     I++ +  +I  V G+  +    G++     I 
Sbjct: 108 VTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV-GEKGEISQKGKV-----IA 156

Query: 182 EAGLRNI--GDNLLARTSVSGDP-IISNP-DDIGFAHVKQGYLEASNVDAVKEISEMISA 237
             GL ++      + R +    P I   P +D+    VK+G+LE SN +++ E+ +MI  
Sbjct: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216

Query: 238 QRAYEMNSKVIE 249
            + +   + +I+
Sbjct: 217 TQKFNSITTLID 228

>gi\|254780380\|ref\|YP_003064793.1\| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Length = 134	Back alignment

 Score = 32.3 bits (72), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 6  IAAAGMSAQQTNLEIIANNIANINTTG-------YKRARAEFADFLY 45
          IA +G++ Q   ++II+ NIAN  TTG       Y+R    F + ++
Sbjct: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

Identity	Alignment graph	Length	Definition	Round	E-value
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
315121847		262	flagellar basal body rod protein FlgG [Candidatus Liber	1	1e-131
227820858		262	flagellar basal body rod protein FlgG [Sinorhizobium fr	1	6e-93
15964415		262	flagellar basal body rod protein FlgG [Sinorhizobium me	1	6e-93
2275161		262	FlgG [Sinorhizobium meliloti] Length = 262	1	1e-92
163758015		262	flagellar basal-body rod protein [Hoeflea phototrophica	1	9e-92
150395485		262	flagellar basal body rod protein FlgG [Sinorhizobium me	1	2e-91
15887898		262	flagellar basal body rod protein FlgG [Agrobacterium tu	1	3e-89
209547928		262	flagellar basal body rod protein FlgG [Rhizobium legumi	1	1e-88
86356312		262	flagellar basal body rod protein FlgG [Rhizobium etli C	1	2e-88
325291939		262	flagellar basal body rod protein FlgG [Agrobacterium sp	1	4e-88

>gi\|315121847\|ref\|YP_004062336.1\| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 262	Back alignment and organism information

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/262 (90%), Positives = 254/262 (96%)

Query: 1   MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK 60
           MKAF IAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEK AGSPSQSAD+
Sbjct: 1   MKAFTIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKAAGSPSQSADQ 60

Query: 61  AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS 120
           +VVPEGI+IGSGVQISSVRNVYTQGE+VHTGN+LDLALVGRGWFQVETPDKTVMYTRAGS
Sbjct: 61  SVVPEGINIGSGVQISSVRNVYTQGELVHTGNSLDLALVGRGWFQVETPDKTVMYTRAGS 120

Query: 121 FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI 180
           FNIDSKGQLVT+DGNTL+PGI IPEE RE+ VSRSGQI+AVTGKNSDFQP+GQLLIANF+
Sbjct: 121 FNIDSKGQLVTSDGNTLLPGITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQLLIANFV 180

Query: 181 NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240
           NEAGLRNIGDNL+ RTSVSG+ IIS+PDD GFAH+KQGYLEASNVDAVKEISEMISAQRA
Sbjct: 181 NEAGLRNIGDNLVTRTSVSGEAIISSPDDAGFAHIKQGYLEASNVDAVKEISEMISAQRA 240

Query: 241 YEMNSKVIEAADEMSSLITKMR 262
           YEMNSKVI+AADEMSSL++KMR
Sbjct: 241 YEMNSKVIQAADEMSSLVSKMR 262

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

>gi\|227820858\|ref\|YP_002824828.1\| flagellar basal body rod protein FlgG [Sinorhizobium fredii NGR234] Length = 262	Back alignment and organism information

>gi\|15964415\|ref\|NP_384768.1\| flagellar basal body rod protein FlgG [Sinorhizobium meliloti 1021] Length = 262	Back alignment and organism information

>gi\|2275161\|gb\|AAB81413.1\| FlgG [Sinorhizobium meliloti] Length = 262	Back alignment and organism information

>gi\|163758015\|ref\|ZP_02165103.1\| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 262	Back alignment and organism information

>gi\|150395485\|ref\|YP_001325952.1\| flagellar basal body rod protein FlgG [Sinorhizobium medicae WSM419] Length = 262	Back alignment and organism information

>gi\|15887898\|ref\|NP_353579.1\| flagellar basal body rod protein FlgG [Agrobacterium tumefaciens str. C58] Length = 262	Back alignment and organism information

>gi\|209547928\|ref\|YP_002279845.1\| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 262	Back alignment and organism information

>gi\|86356312\|ref\|YP_468204.1\| flagellar basal body rod protein FlgG [Rhizobium etli CFN 42] Length = 262	Back alignment and organism information

>gi\|325291939\|ref\|YP_004277803.1\| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] Length = 262	Back alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

Identity	Alignment graph	Length	Definition	E-value
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
PRK12691		262	PRK12691, flgG, flagellar basal body rod protein FlgG;	1e-103
TIGR02488		259	TIGR02488, flgG_G_neg, flagellar basal-body rod protein	3e-90
PRK12692		262	PRK12692, flgG, flagellar basal body rod protein FlgG;	8e-88
PRK12693		261	PRK12693, flgG, flagellar basal body rod protein FlgG;	8e-83
PRK12694		260	PRK12694, flgG, flagellar basal body rod protein FlgG;	1e-72
PRK12816		264	PRK12816, flgG, flagellar basal body rod protein FlgG;	2e-66
TIGR03506		231	TIGR03506, FlgEFG_subfam, fagellar hook-basal body prot	3e-64
PRK12636		263	PRK12636, flgG, flagellar basal body rod protein FlgG;	1e-46
PRK12817		260	PRK12817, flgG, flagellar basal body rod protein FlgG;	7e-46
PRK12690		238	PRK12690, flgF, flagellar basal body rod protein FlgF;	1e-34
PRK12689		253	PRK12689, flgF, flagellar basal body rod protein FlgF;	6e-32
PRK12818		256	PRK12818, flgG, flagellar basal body rod protein FlgG;	2e-30
PRK12640		246	PRK12640, flgF, flagellar basal body rod protein FlgF;	2e-28
PRK12642		241	PRK12642, flgF, flagellar basal body rod protein FlgF;	2e-24
COG4787		251	COG4787, FlgF, Flagellar basal body rod protein [Cell m	3e-23
PRK12641		252	PRK12641, flgF, flagellar basal body rod protein FlgF;	6e-16
PRK12819		257	PRK12819, flgG, flagellar basal body rod protein FlgG;	6e-10
COG4786		265	COG4786, FlgG, Flagellar basal body rod protein [Cell m	1e-72
PRK05682		407	PRK05682, flgE, flagellar hook protein FlgE; Validated	1e-30
PRK08425		731	PRK08425, flgE, flagellar hook protein FlgE; Validated	8e-22
TIGR02489		719	TIGR02489, flgE_epsilon, flagellar hook protein FlgE, e	1e-19
PRK06803		402	PRK06803, flgE, flagellar hook protein FlgE; Validated	8e-15
PRK12637		473	PRK12637, flgE, flagellar hook protein FlgE; Provisiona	1e-10
PRK05841		603	PRK05841, flgE, flagellar hook protein FlgE; Validated	4e-09
PRK12643		209	PRK12643, flgF, flagellar basal body rod protein FlgF;	1e-04
COG1749		423	COG1749, FlgE, Flagellar hook protein FlgE [Cell motili	2e-26
COG1749		423	COG1749, FlgE, Flagellar hook protein FlgE [Cell motili	4e-19
PRK05682		407	PRK05682, flgE, flagellar hook protein FlgE; Validated	1e-18
PRK12637		473	PRK12637, flgE, flagellar hook protein FlgE; Provisiona	1e-13
TIGR02490		89	TIGR02490, flgF, flagellar basal-body rod protein FlgF	4e-13
PRK05841		603	PRK05841, flgE, flagellar hook protein FlgE; Validated	2e-12
PRK08425		731	PRK08425, flgE, flagellar hook protein FlgE; Validated	3e-12
TIGR02489		719	TIGR02489, flgE_epsilon, flagellar hook protein FlgE, e	1e-11
PRK06803		402	PRK06803, flgE, flagellar hook protein FlgE; Validated	2e-11
pfam06429		39	pfam06429, DUF1078, Domain of unknown function (DUF1078	3e-08
PRK05681		135	PRK05681, flgC, flagellar basal body rod protein FlgC;	4e-07
TIGR01395		135	TIGR01395, FlgC, flagellar basal-body rod protein FlgC	1e-06
COG1558		137	COG1558, FlgC, Flagellar basal body rod protein [Cell m	6e-06
PRK12632		130	PRK12632, flgC, flagellar basal body rod protein FlgC;	3e-05
PRK12631		138	PRK12631, flgC, flagellar basal body rod protein FlgC;	6e-04
TIGR02492		322	TIGR02492, flgK_ends, flagellar hook-associated protein	5e-07
PRK07739		507	PRK07739, flgK, flagellar hook-associated protein FlgK;	1e-06
COG1815		133	COG1815, FlgB, Flagellar basal body protein [Cell motil	3e-06
PRK05683		676	PRK05683, flgK, flagellar hook-associated protein FlgK;	2e-05
PRK07191		456	PRK07191, flgK, flagellar hook-associated protein FlgK;	8e-05
COG1558		137	COG1558, FlgC, Flagellar basal body rod protein [Cell m	2e-04
COG1256		552	COG1256, FlgK, Flagellar hook-associated protein [Cell	2e-04
PRK08147		547	PRK08147, flgK, flagellar hook-associated protein FlgK;	0.002
PRK12715		649	PRK12715, flgK, flagellar hook-associated protein FlgK;	0.003
PRK08471		613	PRK08471, flgK, flagellar hook-associated protein FlgK;	0.003
PRK06945		651	PRK06945, flgK, flagellar hook-associated protein FlgK;	0.004
PRK05681		135	PRK05681, flgC, flagellar basal body rod protein FlgC;	8e-07
pfam00460		31	pfam00460, Flg_bb_rod, Flagella basal body rod protein	5e-06
TIGR01395		135	TIGR01395, FlgC, flagellar basal-body rod protein FlgC	2e-04
PRK12632		130	PRK12632, flgC, flagellar basal body rod protein FlgC;	5e-04
TIGR01396		131	TIGR01396, FlgB, flagellar basal-body rod protein FlgB	0.001
PRK12782		138	PRK12782, flgC, flagellar basal body rod protein FlgC;	0.002
PRK12623		131	PRK12623, flgB, flagellar basal body rod protein FlgB;	0.002
PRK05680		137	PRK05680, flgB, flagellar basal body rod protein FlgB;	0.002

>gnl\|CDD\|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>gnl\|CDD\|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG, Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|139158 PRK12692, flgG, flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>gnl\|CDD\|183687 PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	Back alignment and domain information

>gnl\|CDD\|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>gnl\|CDD\|183766 PRK12816, flgG, flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>gnl\|CDD\|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins	Back alignment and domain information

>gnl\|CDD\|183640 PRK12636, flgG, flagellar basal body rod protein FlgG; Provisional	Back alignment and domain information

>gnl\|CDD\|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>gnl\|CDD\|183685 PRK12690, flgF, flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>gnl\|CDD\|183684 PRK12689, flgF, flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>gnl\|CDD\|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>gnl\|CDD\|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>gnl\|CDD\|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>gnl\|CDD\|34398 COG4787, FlgF, Flagellar basal body rod protein [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|105809 PRK12641, flgF, flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>gnl\|CDD\|183769 PRK12819, flgG, flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>gnl\|CDD\|34397 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|181421 PRK08425, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon proteobacterial	Back alignment and domain information

>gnl\|CDD\|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional	Back alignment and domain information

>gnl\|CDD\|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|139117 PRK12643, flgF, flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>gnl\|CDD\|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional	Back alignment and domain information

>gnl\|CDD\|162884 TIGR02490, flgF, flagellar basal-body rod protein FlgF	Back alignment and domain information

>gnl\|CDD\|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|181421 PRK08425, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon proteobacterial	Back alignment and domain information

>gnl\|CDD\|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated	Back alignment and domain information

>gnl\|CDD\|148188 pfam06429, DUF1078, Domain of unknown function (DUF1078)	Back alignment and domain information

>gnl\|CDD\|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	Back alignment and domain information

>gnl\|CDD\|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC	Back alignment and domain information

>gnl\|CDD\|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|183637 PRK12632, flgC, flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>gnl\|CDD\|183636 PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>gnl\|CDD\|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK	Back alignment and domain information

>gnl\|CDD\|181099 PRK07739, flgK, flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>gnl\|CDD\|32000 COG1815, FlgB, Flagellar basal body protein [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|168176 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>gnl\|CDD\|180871 PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>gnl\|CDD\|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion]	Back alignment and domain information

>gnl\|CDD\|181252 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>gnl\|CDD\|183698 PRK12715, flgK, flagellar hook-associated protein FlgK; Provisional	Back alignment and domain information

>gnl\|CDD\|181438 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>gnl\|CDD\|180769 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>gnl\|CDD\|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	Back alignment and domain information

>gnl\|CDD\|109515 pfam00460, Flg_bb_rod, Flagella basal body rod protein	Back alignment and domain information

>gnl\|CDD\|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC	Back alignment and domain information

>gnl\|CDD\|183637 PRK12632, flgC, flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>gnl\|CDD\|162337 TIGR01396, FlgB, flagellar basal-body rod protein FlgB	Back alignment and domain information

>gnl\|CDD\|139220 PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed	Back alignment and domain information

>gnl\|CDD\|183630 PRK12623, flgB, flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>gnl\|CDD\|180196 PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

Identity	Alignment graph	Length	Definition	Probability
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
TIGR02488		263	flgG_G_neg flagellar basal-body rod protein FlgG; Inter	100.0
COG4786		265	FlgG Flagellar basal body rod protein [Cell motility an	100.0
PRK12691		262	flgG flagellar basal body rod protein FlgG; Reviewed	100.0
PRK12693		261	flgG flagellar basal body rod protein FlgG; Provisional	100.0
PRK12816		264	flgG flagellar basal body rod protein FlgG; Reviewed	100.0
PRK12692		262	flgG flagellar basal body rod protein FlgG; Reviewed	100.0
PRK12694		260	flgG flagellar basal body rod protein FlgG; Reviewed	100.0
PRK12636		263	flgG flagellar basal body rod protein FlgG; Provisional	100.0
PRK12817		261	flgG flagellar basal body rod protein FlgG; Reviewed	100.0
PRK12689		253	flgF flagellar basal body rod protein FlgF; Reviewed	100.0
PRK12818		255	flgG flagellar basal body rod protein FlgG; Reviewed	100.0
PRK12640		246	flgF flagellar basal body rod protein FlgF; Reviewed	100.0
PRK12690		237	flgF flagellar basal body rod protein FlgF; Reviewed	100.0
PRK05682		414	flgE flagellar hook protein FlgE; Validated	100.0
TIGR02490		254	flgF flagellar basal-body rod protein FlgF; InterPro: I	100.0
PRK12819		257	flgG flagellar basal body rod protein FlgG; Reviewed	100.0
PRK12642		241	flgF flagellar basal body rod protein FlgF; Reviewed	100.0
TIGR03506		231	FlgEFG_subfam fagellar hook-basal body proteins. This m	100.0
PRK06803		398	flgE flagellar hook protein FlgE; Validated	100.0
PRK12637		473	flgE flagellar hook protein FlgE; Provisional	100.0
PRK12641		252	flgF flagellar basal body rod protein FlgF; Reviewed	100.0
PRK05841		605	flgE flagellar hook protein FlgE; Validated	100.0
COG1749		423	FlgE Flagellar hook protein FlgE [Cell motility and sec	100.0
COG4787		251	FlgF Flagellar basal body rod protein [Cell motility an	100.0
PRK08425		716	flgE flagellar hook protein FlgE; Validated	100.0
TIGR02489		877	flgE_epsilon flagellar hook protein FlgE; InterPro: IPR	100.0
PRK12643		209	flgF flagellar basal body rod protein FlgF; Reviewed	100.0
PRK05681		139	flgC flagellar basal body rod protein FlgC; Reviewed	99.8
PRK12632		130	flgC flagellar basal body rod protein FlgC; Provisional	99.8
PRK12628		140	flgC flagellar basal body rod protein FlgC; Provisional	99.76
PRK12630		143	flgC flagellar basal body rod protein FlgC; Provisional	99.76
PRK06802		141	flgC flagellar basal body rod protein FlgC; Reviewed	99.75
TIGR01395		147	FlgC flagellar basal-body rod protein FlgC; InterPro: I	99.74
PRK12629		135	flgC flagellar basal body rod protein FlgC; Provisional	99.73
PRK12782		138	flgC flagellar basal body rod protein FlgC; Reviewed	99.73
PRK12631		138	flgC flagellar basal body rod protein FlgC; Provisional	99.71
COG1558		137	FlgC Flagellar basal body rod protein [Cell motility an	99.67
PRK08471		612	flgK flagellar hook-associated protein FlgK; Validated	99.02
PRK08871		626	flgK flagellar hook-associated protein FlgK; Validated	98.95
pfam06429		39	DUF1078 Domain of unknown function (DUF1078). This fami	98.9
PRK05683		676	flgK flagellar hook-associated protein FlgK; Validated	98.83
PRK06945		649	flgK flagellar hook-associated protein FlgK; Validated	98.83
PRK08147		547	flgK flagellar hook-associated protein FlgK; Validated	98.78
PRK06004		126	flgB flagellar basal body rod protein FlgB; Reviewed	98.76
TIGR02492		495	flgK_ends flagellar hook-associated protein FlgK; Inter	98.62
PRK12627		128	flgB flagellar basal body rod protein FlgB; Provisional	98.58
PRK12714		624	flgK flagellar hook-associated protein FlgK; Provisiona	98.48
PRK06665		628	flgK flagellar hook-associated protein FlgK; Validated	98.47
PRK12715		649	flgK flagellar hook-associated protein FlgK; Provisiona	98.47
COG1256		552	FlgK Flagellar hook-associated protein [Cell motility a	98.33
COG1815		133	FlgB Flagellar basal body protein [Cell motility and se	93.26
PRK05680		137	flgB flagellar basal body rod protein FlgB; Reviewed	92.2
PRK07739		500	flgK flagellar hook-associated protein FlgK; Validated	99.77
PRK07191		456	flgK flagellar hook-associated protein FlgK; Validated	99.6
PRK06799		431	flgK flagellar hook-associated protein FlgK; Validated	99.56
PRK06665		628	flgK flagellar hook-associated protein FlgK; Validated	99.08
PRK12714		624	flgK flagellar hook-associated protein FlgK; Provisiona	98.9
PRK12715		649	flgK flagellar hook-associated protein FlgK; Provisiona	98.89
TIGR02492		495	flgK_ends flagellar hook-associated protein FlgK; Inter	98.8
PRK08147		547	flgK flagellar hook-associated protein FlgK; Validated	98.75
PRK08871		626	flgK flagellar hook-associated protein FlgK; Validated	98.73
PRK08471		612	flgK flagellar hook-associated protein FlgK; Validated	98.69
COG1256		552	FlgK Flagellar hook-associated protein [Cell motility a	98.62
PRK06945		649	flgK flagellar hook-associated protein FlgK; Validated	98.58
PRK05683		676	flgK flagellar hook-associated protein FlgK; Validated	98.5
PRK07521		482	flgK flagellar hook-associated protein FlgK; Validated	99.52
PRK06003		126	flgB flagellar basal body rod protein FlgB; Reviewed	99.14
PRK12624		143	flgB flagellar basal body rod protein FlgB; Provisional	99.14
PRK05680		137	flgB flagellar basal body rod protein FlgB; Reviewed	99.01
PRK12622		135	flgB flagellar basal body rod protein FlgB; Provisional	98.98
PRK12626		162	flgB flagellar basal body rod protein FlgB; Provisional	98.93
PRK12619		130	flgB flagellar basal body rod protein FlgB; Provisional	98.92
PRK12621		136	flgB flagellar basal body rod protein FlgB; Provisional	98.91
COG1815		133	FlgB Flagellar basal body protein [Cell motility and se	98.88
PRK12623		131	flgB flagellar basal body rod protein FlgB; Provisional	98.88
PRK12620		132	flgB flagellar basal body rod protein FlgB; Provisional	98.87
PRK06797		135	flgB flagellar basal body rod protein FlgB; Reviewed	98.87
PRK12625		132	flgB flagellar basal body rod protein FlgB; Provisional	98.85
PRK12685		116	flgB flagellar basal body rod protein FlgB; Reviewed	98.74
PRK07182		148	flgB flagellar basal body rod protein FlgB; Reviewed	98.71
pfam00460		31	Flg_bb_rod Flagella basal body rod protein.	98.65
TIGR01396		134	FlgB flagellar basal-body rod protein FlgB; InterPro: I	96.66
PRK12627		128	flgB flagellar basal body rod protein FlgB; Provisional	93.95
PRK06004		126	flgB flagellar basal body rod protein FlgB; Reviewed	92.83

>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes	Back alignment and domain information

>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]	Back alignment and domain information

>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional	Back alignment and domain information

>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional	Back alignment and domain information

>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>PRK05682 flgE flagellar hook protein FlgE; Validated	Back alignment and domain information

>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria	Back alignment and domain information

>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed	Back alignment and domain information

>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins	Back alignment and domain information

>PRK06803 flgE flagellar hook protein FlgE; Validated	Back alignment and domain information

>PRK12637 flgE flagellar hook protein FlgE; Provisional	Back alignment and domain information

>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>PRK05841 flgE flagellar hook protein FlgE; Validated	Back alignment and domain information

>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]	Back alignment and domain information

>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]	Back alignment and domain information

>PRK08425 flgE flagellar hook protein FlgE; Validated	Back alignment and domain information

>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter)	Back alignment and domain information

>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed	Back alignment and domain information

>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed	Back alignment and domain information

>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed	Back alignment and domain information

>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella	Back alignment and domain information

>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed	Back alignment and domain information

>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional	Back alignment and domain information

>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]	Back alignment and domain information

>PRK08471 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK08871 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>pfam06429 DUF1078 Domain of unknown function (DUF1078)	Back alignment and domain information

>PRK05683 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK06945 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK08147 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway	Back alignment and domain information

>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional	Back alignment and domain information

>PRK06665 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional	Back alignment and domain information

>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]	Back alignment and domain information

>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]	Back alignment and domain information

>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

>PRK07739 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK07191 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK06799 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK06665 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional	Back alignment and domain information

>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional	Back alignment and domain information

>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway	Back alignment and domain information

>PRK08147 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK08871 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK08471 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]	Back alignment and domain information

>PRK06945 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK05683 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK07521 flgK flagellar hook-associated protein FlgK; Validated	Back alignment and domain information

>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]	Back alignment and domain information

>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

>pfam00460 Flg_bb_rod Flagella basal body rod protein	Back alignment and domain information

>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella	Back alignment and domain information

>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional	Back alignment and domain information

>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed	Back alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

Identity	Alignment graph	Length	Definition	E-value
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
3a69_A		402	Atomic Model Of The Bacterial Flagellar Hook Based	6e-19
3a69_A		402	Atomic Model Of The Bacterial Flagellar Hook Based	3e-15
1wlg_A		299	Crystal Structure Of Flge31, A Major Fragment Of Th	1e-04

>gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On Docking An X-Ray Derived Structure And Terminal Two Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem Map Length = 402

Back alignment and structure

 Score = 98.8 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 100 GRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQIL 159
           G       T +     T + SF    +      +          P +    +++  G ++
Sbjct: 241 GTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVV 300

Query: 160 AVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGY 219
                  + Q +GQ+++ANF N  GL + GDN+ A T  SG  ++       F  +  G 
Sbjct: 301 GNYSNEQE-QVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGA 359

Query: 220 LEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262
           LEASNVD  KE+  MI AQR Y+ N++ I+  D++ + +  +R
Sbjct: 360 LEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402

PyMOL of 3a69

Back alignment and structure

>gi|56554379|pdb|1WLG|A Chain A, Crystal Structure Of Flge31, A Major Fragment Of The Hook Protein Length = 299

Back alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

Identity	Alignment graph	Length	Definition	E-value
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
3a69_A		402	Flagellar HOOK protein FLGE; the bacterial flagellar mo	1e-25
3a69_A		402	Flagellar HOOK protein FLGE; the bacterial flagellar mo	3e-21
1wlg_A		299	Flagellar HOOK protein FLGE; EAR-& motif, structural pr	3e-14
1wlg_A		299	Flagellar HOOK protein FLGE; EAR-& motif, structural pr	1e-09

>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} Length = 402	Back alignment and structure

 Score =  112 bits (279), Expect = 1e-25
 Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 21/217 (9%)

Query: 4   FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVV 63
           F  A +G++A  TNL++I NNIAN  T G+K   A FAD                     
Sbjct: 2   FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA------------------ 43

Query: 64  PEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNI 123
             G  +G GV+++ +   +T G   +TG  LD+A+   G+F++   + +V Y+R G F +
Sbjct: 44  --GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL 101

Query: 124 DSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEA 183
           D    LV   G  L             + +    I       +        +  N  +  
Sbjct: 102 DENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTD 161

Query: 184 GLRNIGD-NLLARTSVSGDPIISNPDDIGFAHVKQGY 219
            + +    ++    S +    ++  D  G AH    Y
Sbjct: 162 PVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVY 198

PyMOL of 3a69

>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} Length = 402	Back alignment and structure

>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A Length = 299	Back alignment and structure

>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A Length = 299	Back alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

Identity	Alignment graph	Length	Definition	Probability
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
3a69_A		402	Flagellar HOOK protein FLGE; the bacterial flagellar mo	100.0
1wlg_A		299	Flagellar HOOK protein FLGE; EAR-& motif, structural pr	100.0

>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}	Back alignment and structure

Probab=100.00  E-value=0  Score=374.28  Aligned_cols=239  Identities=35%  Similarity=0.610  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r    3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY   82 (262)
Q Consensus         3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~   82 (262)
                      |||||+|||.|+|++|+|++|||||+|||||||+++.|++++.                    +.++|.||++.++.++|
T Consensus         1 s~~~a~sGl~A~q~al~vts~NIANaNT~GYsRq~v~f~~~~~--------------------~~~~G~GV~v~~v~r~~   60 (402)
T 3a69_A            1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA--------------------GSKVGLGVKVAGITQDF   60 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHC--------------------CCCCCCCEEEEEEEEEC
T ss_conf             9789999999999735788888987776420657020777646--------------------68776744776789841


Q ss_pred             CCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------------CCCC-
Q ss_conf             5787332652121232377526531489857787521223525883414667610443-----------------1013-
Q gi|254780378|r   83 TQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------------IVIP-  144 (262)
Q Consensus        83 ~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------------~~~p-  144 (262)
                      .||.++.|++++|+||.|+|||.+..++|+.+|||.|+|.+|.+|+||+..|+.|++.                 +.++ 
T Consensus        61 ~qg~~~~t~~~~d~ai~~~g~f~~~~~~g~~~~tr~g~~~~~~~g~lvn~~g~~l~g~~~~~~~~~~~~~~~~~~~~i~~  140 (402)
T 3a69_A           61 TDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPN  140 (402)
T ss_dssp             ----------CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTCCCEECCCCC
T ss_pred             CCCCEEECCCCCHHEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             45645764760030142786178862798643641565342788878637896441231457775222567655521444


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780378|r  145 --------------------------------------------------------------------------------  144 (262)
Q Consensus       145 --------------------------------------------------------------------------------  144 (262)
                                                                                                      
T Consensus       141 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (402)
T 3a69_A          141 TLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAAT  220 (402)
T ss_dssp             CCCCCBCCCEEEEEEEEETTCCCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCC
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCC
T ss_conf             45676553036763024655556653444557765513333379985899726666787763788523797036665554


Q ss_pred             -----------------------------------------------------------------CCCCCCCCCCCCEEE
Q ss_conf             -----------------------------------------------------------------565322101331255
Q gi|254780378|r  145 -----------------------------------------------------------------EETREIKVSRSGQIL  159 (262)
Q Consensus       145 -----------------------------------------------------------------~~~~~i~i~~dG~I~  159 (262)
                                                                                       .....+.|++||.|.
T Consensus       221 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dG~~~~~~~~~~i~~dG~v~  300 (402)
T 3a69_A          221 APTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVV  300 (402)
T ss_dssp             CCCSCSEEEEECTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEESCBCCCCEEEEEECTTCEEE
T ss_pred             CCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf             66555226874146521457720002345456555431000011200135653112102466555421234217895599


Q ss_pred             ECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21588654322211000002662001006886433466665520002467762068607300102349999999999999
Q gi|254780378|r  160 AVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQR  239 (262)
Q Consensus       160 ~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR  239 (262)
                      +.+.. +....++++.++.|.||..|.+.|+++|..+..+|.+..+.+.....++|.||+||.||||+.+||++||..||
T Consensus       301 ~~~~~-~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~~~~~~lE~S~V~ldeEmtnli~~Q~  379 (402)
T 3a69_A          301 GNYSN-EQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQR  379 (402)
T ss_dssp             EEETT-SCEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC---------CHHHHHHHHHHHH
T ss_pred             EEECC-CCCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHH
T ss_conf             97356-54210011234566785773304796064355677730067887873148107545114799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999987159
Q gi|254780378|r  240 AYEMNSKVIEAADEMSSLITKMR  262 (262)
Q Consensus       240 ~ye~n~k~i~t~Dem~~~~~~lr  262 (262)
                      +||+|+|+|++.|||+++++|||
T Consensus       380 aY~A~akvitt~demld~linlk  402 (402)
T 3a69_A          380 NYQSNAQTIKTQDQILNTLVNLR  402 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99997526649999999997059

PyMOL of 3a69

>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A	Back alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

Identity	Alignment graph	Length	Definition	E-value
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
d1wlga_		293	b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella	2e-12
d1wlga_		293	b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella	7e-10

>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Length = 293	Back information, alignment and structure


class: All beta proteins
fold: Flagellar hook protein flgE
superfamily: Flagellar hook protein flgE
family: Flagellar hook protein flgE
domain: Flagellar hook protein flgE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 66.9 bits (162), Expect = 2e-12
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 77  SVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNT 136
           S     T      T    +   +      V     T+    A +F++     +    G  
Sbjct: 144 SSDPAATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGAN 203

Query: 137 LVPGIVIPEETR----EIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNL 192
            +                +++  G ++     N   Q +GQ+++ANF N  GL + GDN+
Sbjct: 204 NIVATNQNGYKPGDLVSYQINNDGTVVG-NYSNEQEQVLGQIVLANFANNEGLASQGDNV 262

Query: 193 LARTSVSGDPIISNPDDIGFAHVKQGYLEAS 223
            A T  SG  ++       F  +  G LEAS
Sbjct: 263 WAATQASGVALLGTAGSGNFGKLTNGALEAS 293

PyMOL of d1wlga_

>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Length = 293	Back information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

Identity	Alignment graph	Length	Definition	Probability
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
d1wlga_		293	Flagellar hook protein flgE {Salmonella typhimurium [Ta	99.96

>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

class: All beta proteins
fold: Flagellar hook protein flgE
superfamily: Flagellar hook protein flgE
family: Flagellar hook protein flgE
domain: Flagellar hook protein flgE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=4.2e-30  Score=199.68  Aligned_cols=129  Identities=33%  Similarity=0.567  Sum_probs=114.8

Q ss_pred             EEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------------CCCCCC----------
Q ss_conf             21232377526531489857787521223525883414667610443-----------------101356----------
Q gi|254780378|r   94 LDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------------IVIPEE----------  146 (262)
Q Consensus        94 lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------------~~~p~~----------  146 (262)
                      |||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++|+++                 +.+|..          
T Consensus         2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~~l~G~~~d~~~~~~~~~~~~~~i~i~~~~~~~~aTt~~   81 (293)
T d1wlga_           2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTA   81 (293)
T ss_dssp             EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTCCCEECCCCCCCBCCBCCCEE
T ss_pred             CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             64787487079987699988784488732989999883999989857636888631257765544344434577655146


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780378|r  147 --------------------------------------------------------------------------------  146 (262)
Q Consensus       147 --------------------------------------------------------------------------------  146 (262)
                                                                                                      
T Consensus        82 ~~~~NL~~~~~~~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~~~~~~~~l~F  161 (293)
T d1wlga_          82 SMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKF  161 (293)
T ss_dssp             EEEEEEETTCCCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCCCCSCSEEEEE
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf             77416642123553222234787763301136764225864222056662046541378712566445466431356532


Q ss_pred             --------------------------------------------------------CCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             --------------------------------------------------------532210133125521588654322
Q gi|254780378|r  147 --------------------------------------------------------TREIKVSRSGQILAVTGKNSDFQP  170 (262)
Q Consensus       147 --------------------------------------------------------~~~i~i~~dG~I~~~~~~~~~~~~  170 (262)
                                                                              ...+.|++||.|.+.+ .|+..++
T Consensus       162 ~~~G~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~~y-sNG~~~~  240 (293)
T d1wlga_         162 NENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNY-SNEQEQV  240 (293)
T ss_dssp             CTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEEEE-TTSCEEE
T ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEEEE-CCCCEEE
T ss_conf             786322233310002344112432100025221000125740024432688431123210665875899997-6996789


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf             21100000266200100688643346666552000246776206860730010
Q gi|254780378|r  171 VGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEAS  223 (262)
Q Consensus       171 i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~S  223 (262)
                      ++||+|++|.||+.|+++|+++|+++.+||.+..+.|+..+.++|.+|+||.|
T Consensus       241 lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S  293 (293)
T d1wlga_         241 LGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS  293 (293)
T ss_dssp             EEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC
T ss_pred             EEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC
T ss_conf             88999997359687321259708760016885556899888223842613169

PyMOL of d1wlga_

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

Identity	Alignment graph	Length	Definition	E-value
Target		262	flagellar basal body rod protein FlgG [Candidatus
3a69_A_48-116_315-358		113	(A:48-116,A:315-358) Flagellar HOOK protein FLGE;	2e-25
1wlg_A_1-46_245-281		83	(A:1-46,A:245-281) Flagellar HOOK protein FLGE; EA	2e-19

>3a69_A (A:48-116,A:315-358) Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}Length = 113	Back alignment and structure

 Score =  110 bits (277), Expect = 2e-25
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 36/149 (24%)

Query: 70  GSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQL 129
           G GV+++ +   +T G   +TG  LD+A+   G+F++   + +V Y+R G F +D    L
Sbjct: 1   GLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNL 60

Query: 130 VTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIG 189
           V   G  L                                     ++ANF N  GL + G
Sbjct: 61  VNMQGMQL------------------------------------TVLANFANNEGLASQG 84

Query: 190 DNLLARTSVSGDPIISNPDDIGFAHVKQG 218
           DN+ A T  SG  ++       F  +  G
Sbjct: 85  DNVWAATQASGVALLGTAGSGNFGKLTNG 113

PyMOL of 3a69

>1wlg_A (A:1-46,A:245-281) Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium}Length = 83	Back alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

Identity	Alignment graph	Length	Definition	Probability
Target		262	flagellar basal body rod protein FlgG [Candidatus Liber
3a69_A_48-116_315-358		113	Flagellar HOOK protein FLGE; the bacterial flagell	99.95
1wlg_A_1-46_245-281		83	Flagellar HOOK protein FLGE; EAR-& motif, structur	99.85
1wlg_A_47-61_219-244_282-299		59	Flagellar HOOK protein FLGE; EAR-& motif, structur	94.59

>3a69_A (A:48-116,A:315-358) Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}	Back alignment and structure

Probab=99.95  E-value=4.3e-29  Score=195.93  Aligned_cols=113  Identities=33%  Similarity=0.647  Sum_probs=107.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44202112322335787332652121232377526531489857787521223525883414667610443101356532
Q gi|254780378|r   70 GSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETRE  149 (262)
Q Consensus        70 g~gv~~~~~~~~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~  149 (262)
                      |.||++.+++++|+||+++.|++|||+||+|+|||.|++++|+++|||+|+|++|++|||||.+|++||           
T Consensus         1 G~Gv~~~~~~~~~~qG~l~~T~~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~ld~~G~Lvt~~G~~vl-----------   69 (113)
T 3a69_A            1 GLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLT-----------   69 (113)
T ss_dssp             -----------------------CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEE-----------
T ss_pred             CCCEEEEEEEEEECCCCEEECCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------
T ss_conf             676477679996045545762645566622786036751578600013454220478871235674002-----------


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             210133125521588654322211000002662001006886433466665520002467762068607
Q gi|254780378|r  150 IKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQG  218 (262)
Q Consensus       150 i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG  218 (262)
                                               +|++|+||+.|+++|++.|.++..+|+|.++.|+..++++|..|
T Consensus        70 -------------------------al~~f~n~~gL~~~g~~~~~~t~~sG~~~~g~~g~~~~G~i~~G  113 (113)
T 3a69_A           70 -------------------------VLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNG  113 (113)
T ss_dssp             -------------------------CEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC-
T ss_pred             -------------------------CCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             -------------------------34566786774413784476133567730167887872547107

PyMOL of 3a69

>1wlg_A (A:1-46,A:245-281) Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium}	Back alignment and structure

>1wlg_A (A:47-61,A:219-244,A:282-299) Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium}	Back alignment and structure

Protein GIs
255764464	254780359
254780360	254780361
255764465	254780363
254780364	254780365
255764466	254780367
254780368	254780369
254780370	254780371
254780372	254780373
254780374	254780375
254780376	254780377
254780378	254780379
254780380	254780381
254780382	254780383
254780384	255764467
254780386	254780387
254780388	254780389
254780390	254780391
254780392	255764468
255764469	254780395
peg_298	254780396
254780397	254780398
254780399	254780400
254780401	254780402
254780403	254780404
254780405	254780406
254780407	254780408
254780409	254780410
254780411	254780412
254780413	254780414
255764470	254780416
254780417	254780418
254780419	254780420
254780421	255764471
254780423	254780424
254780425	254780426
peg_330	254780427
255764472	254780429
254780430	254780431
254780432	255764473
254780434	254780435
254780436	254780437
254780438	254780439
254780440	255764474
254780442	254780443
peg_348	peg_349
254780444	254780445
254780446	254780447
254780448	254780449
254780450	254780451
254780452	254780453
254780454	peg_360
254780455	254780456
peg_363	254780457
254780458	254780459
254780460	254780461
254780462	254780463
254780464	254780465
254780466	peg_374
254780467	254780468
254780469	254780470
254780471	254780472
254780473	254780474
254780475	254780476
254780477	254780478
254780479	254780480
254780481	254780482
254780483	254780484
peg_393	peg_394
254780485	254780486
254780487	254780488
254780489	254780490
254780491	254780492
254780829	254780828
254780827	254780826
255764475	255764476
254780824	254780823
peg_409	peg_410
254780822	254780821
254780820	peg_414
255764477	254780818
254780817	254780816
254780815	254780814
254780813	254780812
254780811	peg_423
254780810	254780809
254780808	254780807
254780806	254780805
254780804	254780803
254780802	254780801
254780800	254780799
254780798	254780797
254780796	254780795
254780794	254780793
255764478	254780791
254780790	254780789
254780788	254780787
254780786	254780785
254780784	254780783
254780782	255764479
254780781	254780780
peg_455	255764480
254780779	254780778
254780777	254780776
254780775	254780774
254780773	254780772
254780771	254780770
255764481	254780768
254780767	254780766
254780765	254780764
peg_472	peg_473
254780763	254780762
peg_476	peg_477
254780761	254780760
254780759	254780758
254780757	255764482
254780755	254780754
254780753	254780752
254780751	254780750
254780749	254780748
254780747	peg_493
254780746	254780745
254780744	254780743
254780742	254780741
254780740	254780739
255764483	254780737
254780736	254780735
254780734	254780733
254780732	peg_509
255764484	254780730
254780729	254780728
254780727	255764485
254780725	254780724
254780723	254780722
254780721	254780720
254780719	254780718
peg_523	254780717
254780716	254780715
254780714	254780713
254780712	254780711
254780710	peg_532
254780709	254780708
254780707	255764486
254780705	254780704
254780703	255764487
254780701	peg_542
254780700	254780699
254780698	254780697
254780696	254780695
254780694	254780693
254780692	254780691
254780690	254780689
254780688	254780687
255764488	254780685
254780684	254780683
254780682	255764489
254780680	peg_563
254780679	254780678
254780677	254780676
254780675	254780674
peg_568	254780673
255764490	254780671
254780670	254780669
peg_574	254780668
254780667	254780666
255764491	peg_577
254780664	254780663
254780662	254780661
peg_582	254780660
254780659	254780658
254780657	255764492
254780655	254780654
254780653	254780652
254780651	254780650
peg_593	254780649
254780648	254780647
254780646	peg_598
254780645	254780644
255764493	254780642
254780641	254780640
peg_603	254780639
254780638	255764494
254780636	254780635
254780634	254780633
254780632	254780631
peg_612	254780630
254780629	254780628
254780627	254780626
254780625	254780624
254780623	254780622
254780621	254780620
254780619	254780618
254780617	254780616
254780615	254780614
254780613	254780612
254780611	254780610
peg_634	255764495
254780608	254780607
254780606	254780605
254780604	254780603
254780602	254780601
254780600	255764496
254780598	255764497
254780596	254780595
254780594	254780593
254780592	254780591
254780590	254780589
254780588	255764498
peg_658	254780586
254780585	254780584
254780583	254780582
254780581	255764499
254780579	254780578
254780577	254780576
254780575	255764500
peg_671	254780573
254780572	254780571
254780570	254780569
254780568	254780567
254780565	254780564
254780563	254780562
peg_683	254780561
255764501	254780559
254780558	254780557
254780556	254780555
peg_691	254780554
254780553	254780552
254780551	255764502
254780549	254780548
254780547	254780546
254780545	254780544
254780543	254780542
255764503	254780540
254780539	254780538
254780537	254780536
254780535	254780534
254780533	254780532
254780531	254780530
254780529	254780528
254780527	254780526
254780525	254780524
254780523	254780522
254780521	254780520
254780519	254780518
255764504	254780516
254780515	254780514
254780513	254780512
254780511	254780510
254780509	254780508
254780507	254780506
254780505	254780504
254780503	254780502
254780501	254780500
254780499	254780498
254780497	254780496
254780495	254780494
254780493	254780830
254780831	254780832
254780833	peg_753
peg_754	254780834
255764505	254780836
254780837	peg_759
254780838	254780839
254780840	254780841
254780842	254780843
254780844	254780845
254780846	254780847
254780848	254780849
254780850	254780851
254780852	254780853
254780854	254780855
254780856	254780857
254780858	254780859
254780860	254780861
254780862	254780863
254780864	254780865
254780866	254780867
254780868	254780869
peg_786	254780870
peg_788	peg_789
254780871	254780872
254780873	254780874
254780875	254780876
254780877	254780878
254780879	254780880
254780881	254780882
254780883	255764506
254780885	254780886
254780887	254780888
peg_804	254780889
254780890	254780891
254780892	254780893
254780894	254780895
254780896	peg_813
254780897	254780898
peg_816	peg_817
peg_818	254780899
254780900	254780901
254780902	254780903
254780904	254780905
254780906	254780907
254780908	254780909
255764507	254780911
254780912	254780913
254780914	peg_834
254780915	254780916
254780917	254780918
254780919	254780920
254780921	254780922
254780923	254780924
254780925	254780926
254780927	254780928
254780929	254780930
254780931	peg_851
peg_852	254780932
254780933	254780934
254780935	254780936
254780937	254780938
254780939	254780940
254780941	254780942
254780943	254780944
254780945	254780946
254780947	peg_869
254780948	254780949
255764508	peg_873
peg_874	254780951
254780952	254780953
254780954	254780955
peg_880	254780956
254780957	254780958
254780959	peg_885
254780960	peg_887
peg_888	peg_889
254780961	254780962
254780963	254780964
254780965	254780966
254780967	254780968
254780969	254780970
254780971	254780972
254780973	254780974
254780975	peg_905
254780976	254780977
254780978	254780979
254780980	peg_911
peg_912	254780981
peg_913	254780982
254780983	peg_916
254780984	254780985
254780986	254780987
254780988	254780989
254780990	254780991
254780992	254780993
254780994	254780995
254780996	254780997
254780998	254780999
peg_930	peg_931
254781000	254781001
254781002	254781003
254781004	peg_937
254781005	254781006
254781007	254781008
peg_942	254781009
254781010	peg_945
254781011	254781012
254781013	254781014
peg_950	254781015
254781016	254781017
254781018	254781019
254781020	255764509
254781022	254781023
254781024	254781025
peg_961	254781026
254781027	254781028
254781029	254781030
254781031	254781032
254781033	254781034
255764510	254781036
254781037	254781038
254781039	254781040
254781041	254781042
254781043	254781044
254781045	254781046
254781047	254781048
254781049	254781050
254781051	254781052
254781053	254781054
254781055	254781056
254781057	254781058
peg_993	254781059
254781060	254781061
254781062	254781063
254781064	254781065
254781066	254781067
254781068	254781069
254781070	254781071
254781072	254781073
254781074	254781075
254781076	254781077
254781078	254781079
254781080	254781081
254781082	254781083
254781084	254781085
254781086	254781087
254781088	254781089
254781090	254781091
254781092	254781093
254781094	254781095
254781096	254781097
254781098	254781099
254781100	254781101
254781102	254781103
254781104	255764511
254781106	254781107
254781108	254781109
254781110	peg_1044
254781111	254781112
254781113	254781114
254781115	255764512
255764513	254781118
254781119	254781120
254781121	254781122
254781123	254781124
254781125	peg_1058
254781126	254781127
254781128	254781129
254781130	254781131
peg_1064	254781132
254781133	254781134
254781135	254781136
254781137	254781138
254781139	254781140
peg_1073	peg_1074
254781141	254781142
254781143	254781144
254781145	peg_1078
peg_1079	peg_1080
254781146	254781147
peg_1083	254781148
254781149	peg_1086
peg_1087	254781150
254781151	254781152
peg_1090	254781153
254781154	254781155
254781156	254781157
254781158	254781159
peg_1096	254781160
254781161	254781162
254781163	peg_1101
254781164	254781165
254781166	254781167
254781168	254781169
peg_1107	254781170
254781171	254781172
255764514	254781174
254781175	254781176
254781177	254781178
254781179	254781180
254781181	peg_1120
254781182	254781183
peg_1123	254781184
254781185	254781186
254781187	254781188
peg_1128	254781189
254781190	254781191
254781192	254781193
254781194	255764515
254781196	254781197
254781198	254781199
peg_1140	255764516
peg_1142	255764517
254781202	254781203
254781204	254781205
254781206	254781207
254781208	254781209
254781210	254781211
254781212	254781213
254781214	254781215
254781216	254781217
254781218	254781219
254781220	254781221
254781222	254781223
254781224	254781225
254781226	254781227
254781228	254780122
254780123	254780124
254780125	254780126
254780127	254780128
254780129	254780130
254780131	254780132
254780133	254780134
254780135	254780136
peg_15	254780137
254780138	254780139
254780140	254780141
peg_21	254780142
254780143	254780144
254780145	peg_26
254780146	254780147
254780148	254780149
254780150	254780151
peg_33	peg_34
254780152	peg_36
254780153	254780154
254780155	254780156
254780157	254780158
peg_42	254780159
254780160	254780161
254780162	254780163
254780164	254780165
254780166	254780167
254780168	254780169
peg_54	254780170
254780171	254780172
254780173	254780174
peg_60	254780175
254780176	254780177
254780178	254780179
254780180	254780181
254780182	254780183
254780184	254780185
254780186	254780187
254780188	peg_74
peg_75	254780189
254780190	254780191
255764460	peg_80
254780193	peg_82
254780194	254780195
254780196	254780197
254780198	254780199
254780200	254780201
254780202	peg_91
254780203	254780204
254780205	254780206
254780207	254780208
peg_97	peg_98
254780209	254780210
254780211	254780212
254780213	254780214
254780215	255764461
254780217	254780218
254780219	254780220
peg_109	254780221
254780222	254780223
254780224	254780225
254780226	peg_116
254780227	254780228
254780229	254780230
254780231	254780232
254780233	254780234
254780235	254780236
254780237	peg_128
254780238	254780239
254780240	254780241
254780242	254780243
254780244	254780245
254780246	254780247
254780248	254780249
254780250	254780251
254780252	254780253
254780254	254780255
254780256	254780257
254780258	254780259
254780260	254780261
254780262	254780263
254780264	254780265
254780266	254780267
254780268	254780269
254780270	254780271
254780272	254780273
254780274	peg_166
254780275	254780276
254780277	254780278
254780279	254780280
254780281	254780282
254780283	254780284
254780285	254780286
254780287	254780288
254780289	254780290
254780291	254780292
254780293	peg_186
254780294	254780295
255764462	254780297
peg_191	254780298
254780299	254780300
254780301	254780302
254780303	254780304
254780305	254780306
254780307	254780308
254780309	254780310
peg_204	254780311
254780312	254780313
254780314	254780315
254780316	254780317
254780318	254780319
254780320	254780321
254780322	254780323
peg_218	254780324
254780325	254780326
254780327	254780328
peg_224	254780329
254780330	peg_227
254780331	254780332
254780333	254780334
peg_232	254780335
peg_233	254780336
254780337	254780338
peg_237	254780339
254780340	254780341
254780342	254780343
254780344	254780345
254780346	254780347
254780348	peg_248
254780349	254780350
254780351	peg_252
255764463	peg_254
254780353	254780354
254780355	254780356
254780357

254780378

flagellar basal body rod protein FlgG

Prediction of Local Sequence Properties

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Conserved Domains in CDD DatabaseDetected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Conserved Domains in CDD Database Detected by HHsearch

Homologous Structures in PDB DatabaseDetected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Homologous Structures in PDB70 Database Detected by HHsearch

Homologous Domains in SCOP and MMDB DatabaseDetected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Homologous Domains in MMDB70 Database Detected by HHsearch

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch