254780378
flagellar basal body rod protein FlgG
GeneID in NCBI database: | 8209363 | Locus tag: | CLIBASIA_01315 |
Protein GI in NCBI database: | 254780378 | Protein Accession: | YP_003064791.1 |
Gene range: | -(275260, 276048) | Protein Length: | 262aa |
Gene description: | flagellar basal body rod protein FlgG | ||
COG prediction: | [N] Flagellar basal body rod protein | ||
KEGG prediction: | flgG; flagellar basal body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG | ||
SEED prediction: | Flagellar basal-body rod protein FlgG | ||
Pathway involved in KEGG: | Flagellar assembly [PATH:las02040] | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | |||
254780525 | 421 | flagellar hook protein FlgE [Candidatus Liberibact | 1e-15 | ||
254780525 | 421 | flagellar hook protein FlgE [Candidatus Liberibact | 8e-10 | ||
254780685 | 243 | flagellar basal body rod protein FlgF [Candidatus | 2e-13 | ||
254780380 | 134 | flagellar basal body rod protein FlgC [Candidatus | 0.009 |
>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 | Back alignment |
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Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 16/132 (12%) Query: 7 AAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEG 66 A +GM AQ + +++NIAN++T GYKR F+ ++ PS S Sbjct: 10 AMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF--------PSTSNSY------ 55 Query: 67 ISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSK 126 + G++IS+ + QG ++HT +N DLA+ G+G+F V+ D TRAG F+I+++ Sbjct: 56 --VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNE 113 Query: 127 GQLVTADGNTLV 138 G L G L+ Sbjct: 114 GFLENVAGGVLL 125 |
>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 | Back alignment |
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Score = 55.8 bits (133), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%) Query: 117 RAGSFNIDSKG--QLVTAD--GNTLVPGIVIPEET----------REIKVSRSGQILAVT 162 +A SFN ++ G Q +T D T + G IP+++ ++ VS+ G + + Sbjct: 262 KAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIY 321 Query: 163 GKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222 + P+ +L IA +E L+ N T SGD I P + G LE Sbjct: 322 DDGTRV-PIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALET 380 Query: 223 SNVDAVKEISEMISAQRAYEMNSKVIE-AADEMSSLITKMR 262 +NVD E++E+I AQR Y +NSKV + +D M LI+ R Sbjct: 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 |
>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243 | Back alignment |
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Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 32/252 (12%) Query: 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAV 62 +F I A A + L +A+N++N +T G++ + +F++ V G+ D+ + Sbjct: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSE-------VVGAIKNDIDQKI 56 Query: 63 VPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFN 122 + SG + S + V G + TG LD AL G WF +E+P + ++ TR G F Sbjct: 57 S----FVASGKEYLS-KEV---GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFK 107 Query: 123 IDSKGQLVTADGNTLVPGIV-IPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFIN 181 + G LV+A G V + +P I++ + +I V G+ + G++ I Sbjct: 108 VTDDGSLVSASGKYPVLDMASVP-----IQIPQKDEIFNV-GEKGEISQKGKV-----IA 156 Query: 182 EAGLRNI--GDNLLARTSVSGDP-IISNP-DDIGFAHVKQGYLEASNVDAVKEISEMISA 237 GL ++ + R + P I P +D+ VK+G+LE SN +++ E+ +MI Sbjct: 157 TMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHL 216 Query: 238 QRAYEMNSKVIE 249 + + + +I+ Sbjct: 217 TQKFNSITTLID 228 |
>gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Length = 134 | Back alignment |
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Score = 32.3 bits (72), Expect = 0.009, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Query: 6 IAAAGMSAQQTNLEIIANNIANINTTG-------YKRARAEFADFLY 45 IA +G++ Q ++II+ NIAN TTG Y+R F + ++ Sbjct: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | |||
315121847 | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | 1 | 1e-131 | |
227820858 | 262 | flagellar basal body rod protein FlgG [Sinorhizobium fr | 1 | 6e-93 | |
15964415 | 262 | flagellar basal body rod protein FlgG [Sinorhizobium me | 1 | 6e-93 | |
2275161 | 262 | FlgG [Sinorhizobium meliloti] Length = 262 | 1 | 1e-92 | |
163758015 | 262 | flagellar basal-body rod protein [Hoeflea phototrophica | 1 | 9e-92 | |
150395485 | 262 | flagellar basal body rod protein FlgG [Sinorhizobium me | 1 | 2e-91 | |
15887898 | 262 | flagellar basal body rod protein FlgG [Agrobacterium tu | 1 | 3e-89 | |
209547928 | 262 | flagellar basal body rod protein FlgG [Rhizobium legumi | 1 | 1e-88 | |
86356312 | 262 | flagellar basal body rod protein FlgG [Rhizobium etli C | 1 | 2e-88 | |
325291939 | 262 | flagellar basal body rod protein FlgG [Agrobacterium sp | 1 | 4e-88 |
>gi|315121847|ref|YP_004062336.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 262 | Back alignment and organism information |
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Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 236/262 (90%), Positives = 254/262 (96%) Query: 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADK 60 MKAF IAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEK AGSPSQSAD+ Sbjct: 1 MKAFTIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKAAGSPSQSADQ 60 Query: 61 AVVPEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGS 120 +VVPEGI+IGSGVQISSVRNVYTQGE+VHTGN+LDLALVGRGWFQVETPDKTVMYTRAGS Sbjct: 61 SVVPEGINIGSGVQISSVRNVYTQGELVHTGNSLDLALVGRGWFQVETPDKTVMYTRAGS 120 Query: 121 FNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFI 180 FNIDSKGQLVT+DGNTL+PGI IPEE RE+ VSRSGQI+AVTGKNSDFQP+GQLLIANF+ Sbjct: 121 FNIDSKGQLVTSDGNTLLPGITIPEEARELTVSRSGQIMAVTGKNSDFQPLGQLLIANFV 180 Query: 181 NEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 NEAGLRNIGDNL+ RTSVSG+ IIS+PDD GFAH+KQGYLEASNVDAVKEISEMISAQRA Sbjct: 181 NEAGLRNIGDNLVTRTSVSGEAIISSPDDAGFAHIKQGYLEASNVDAVKEISEMISAQRA 240 Query: 241 YEMNSKVIEAADEMSSLITKMR 262 YEMNSKVI+AADEMSSL++KMR Sbjct: 241 YEMNSKVIQAADEMSSLVSKMR 262 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227820858|ref|YP_002824828.1| flagellar basal body rod protein FlgG [Sinorhizobium fredii NGR234] Length = 262 | Back alignment and organism information |
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>gi|15964415|ref|NP_384768.1| flagellar basal body rod protein FlgG [Sinorhizobium meliloti 1021] Length = 262 | Back alignment and organism information |
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>gi|2275161|gb|AAB81413.1| FlgG [Sinorhizobium meliloti] Length = 262 | Back alignment and organism information |
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>gi|163758015|ref|ZP_02165103.1| flagellar basal-body rod protein [Hoeflea phototrophica DFL-43] Length = 262 | Back alignment and organism information |
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>gi|150395485|ref|YP_001325952.1| flagellar basal body rod protein FlgG [Sinorhizobium medicae WSM419] Length = 262 | Back alignment and organism information |
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>gi|15887898|ref|NP_353579.1| flagellar basal body rod protein FlgG [Agrobacterium tumefaciens str. C58] Length = 262 | Back alignment and organism information |
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>gi|209547928|ref|YP_002279845.1| flagellar basal body rod protein FlgG [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 262 | Back alignment and organism information |
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>gi|86356312|ref|YP_468204.1| flagellar basal body rod protein FlgG [Rhizobium etli CFN 42] Length = 262 | Back alignment and organism information |
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>gi|325291939|ref|YP_004277803.1| flagellar basal body rod protein FlgG [Agrobacterium sp. H13-3] Length = 262 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | ||
PRK12691 | 262 | PRK12691, flgG, flagellar basal body rod protein FlgG; | 1e-103 | |
TIGR02488 | 259 | TIGR02488, flgG_G_neg, flagellar basal-body rod protein | 3e-90 | |
PRK12692 | 262 | PRK12692, flgG, flagellar basal body rod protein FlgG; | 8e-88 | |
PRK12693 | 261 | PRK12693, flgG, flagellar basal body rod protein FlgG; | 8e-83 | |
PRK12694 | 260 | PRK12694, flgG, flagellar basal body rod protein FlgG; | 1e-72 | |
PRK12816 | 264 | PRK12816, flgG, flagellar basal body rod protein FlgG; | 2e-66 | |
TIGR03506 | 231 | TIGR03506, FlgEFG_subfam, fagellar hook-basal body prot | 3e-64 | |
PRK12636 | 263 | PRK12636, flgG, flagellar basal body rod protein FlgG; | 1e-46 | |
PRK12817 | 260 | PRK12817, flgG, flagellar basal body rod protein FlgG; | 7e-46 | |
PRK12690 | 238 | PRK12690, flgF, flagellar basal body rod protein FlgF; | 1e-34 | |
PRK12689 | 253 | PRK12689, flgF, flagellar basal body rod protein FlgF; | 6e-32 | |
PRK12818 | 256 | PRK12818, flgG, flagellar basal body rod protein FlgG; | 2e-30 | |
PRK12640 | 246 | PRK12640, flgF, flagellar basal body rod protein FlgF; | 2e-28 | |
PRK12642 | 241 | PRK12642, flgF, flagellar basal body rod protein FlgF; | 2e-24 | |
COG4787 | 251 | COG4787, FlgF, Flagellar basal body rod protein [Cell m | 3e-23 | |
PRK12641 | 252 | PRK12641, flgF, flagellar basal body rod protein FlgF; | 6e-16 | |
PRK12819 | 257 | PRK12819, flgG, flagellar basal body rod protein FlgG; | 6e-10 | |
COG4786 | 265 | COG4786, FlgG, Flagellar basal body rod protein [Cell m | 1e-72 | |
PRK05682 | 407 | PRK05682, flgE, flagellar hook protein FlgE; Validated | 1e-30 | |
PRK08425 | 731 | PRK08425, flgE, flagellar hook protein FlgE; Validated | 8e-22 | |
TIGR02489 | 719 | TIGR02489, flgE_epsilon, flagellar hook protein FlgE, e | 1e-19 | |
PRK06803 | 402 | PRK06803, flgE, flagellar hook protein FlgE; Validated | 8e-15 | |
PRK12637 | 473 | PRK12637, flgE, flagellar hook protein FlgE; Provisiona | 1e-10 | |
PRK05841 | 603 | PRK05841, flgE, flagellar hook protein FlgE; Validated | 4e-09 | |
PRK12643 | 209 | PRK12643, flgF, flagellar basal body rod protein FlgF; | 1e-04 | |
COG1749 | 423 | COG1749, FlgE, Flagellar hook protein FlgE [Cell motili | 2e-26 | |
COG1749 | 423 | COG1749, FlgE, Flagellar hook protein FlgE [Cell motili | 4e-19 | |
PRK05682 | 407 | PRK05682, flgE, flagellar hook protein FlgE; Validated | 1e-18 | |
PRK12637 | 473 | PRK12637, flgE, flagellar hook protein FlgE; Provisiona | 1e-13 | |
TIGR02490 | 89 | TIGR02490, flgF, flagellar basal-body rod protein FlgF | 4e-13 | |
PRK05841 | 603 | PRK05841, flgE, flagellar hook protein FlgE; Validated | 2e-12 | |
PRK08425 | 731 | PRK08425, flgE, flagellar hook protein FlgE; Validated | 3e-12 | |
TIGR02489 | 719 | TIGR02489, flgE_epsilon, flagellar hook protein FlgE, e | 1e-11 | |
PRK06803 | 402 | PRK06803, flgE, flagellar hook protein FlgE; Validated | 2e-11 | |
pfam06429 | 39 | pfam06429, DUF1078, Domain of unknown function (DUF1078 | 3e-08 | |
PRK05681 | 135 | PRK05681, flgC, flagellar basal body rod protein FlgC; | 4e-07 | |
TIGR01395 | 135 | TIGR01395, FlgC, flagellar basal-body rod protein FlgC | 1e-06 | |
COG1558 | 137 | COG1558, FlgC, Flagellar basal body rod protein [Cell m | 6e-06 | |
PRK12632 | 130 | PRK12632, flgC, flagellar basal body rod protein FlgC; | 3e-05 | |
PRK12631 | 138 | PRK12631, flgC, flagellar basal body rod protein FlgC; | 6e-04 | |
TIGR02492 | 322 | TIGR02492, flgK_ends, flagellar hook-associated protein | 5e-07 | |
PRK07739 | 507 | PRK07739, flgK, flagellar hook-associated protein FlgK; | 1e-06 | |
COG1815 | 133 | COG1815, FlgB, Flagellar basal body protein [Cell motil | 3e-06 | |
PRK05683 | 676 | PRK05683, flgK, flagellar hook-associated protein FlgK; | 2e-05 | |
PRK07191 | 456 | PRK07191, flgK, flagellar hook-associated protein FlgK; | 8e-05 | |
COG1558 | 137 | COG1558, FlgC, Flagellar basal body rod protein [Cell m | 2e-04 | |
COG1256 | 552 | COG1256, FlgK, Flagellar hook-associated protein [Cell | 2e-04 | |
PRK08147 | 547 | PRK08147, flgK, flagellar hook-associated protein FlgK; | 0.002 | |
PRK12715 | 649 | PRK12715, flgK, flagellar hook-associated protein FlgK; | 0.003 | |
PRK08471 | 613 | PRK08471, flgK, flagellar hook-associated protein FlgK; | 0.003 | |
PRK06945 | 651 | PRK06945, flgK, flagellar hook-associated protein FlgK; | 0.004 | |
PRK05681 | 135 | PRK05681, flgC, flagellar basal body rod protein FlgC; | 8e-07 | |
pfam00460 | 31 | pfam00460, Flg_bb_rod, Flagella basal body rod protein | 5e-06 | |
TIGR01395 | 135 | TIGR01395, FlgC, flagellar basal-body rod protein FlgC | 2e-04 | |
PRK12632 | 130 | PRK12632, flgC, flagellar basal body rod protein FlgC; | 5e-04 | |
TIGR01396 | 131 | TIGR01396, FlgB, flagellar basal-body rod protein FlgB | 0.001 | |
PRK12782 | 138 | PRK12782, flgC, flagellar basal body rod protein FlgC; | 0.002 | |
PRK12623 | 131 | PRK12623, flgB, flagellar basal body rod protein FlgB; | 0.002 | |
PRK05680 | 137 | PRK05680, flgB, flagellar basal body rod protein FlgB; | 0.002 |
>gnl|CDD|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>gnl|CDD|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG, Gram-negative bacteria | Back alignment and domain information |
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>gnl|CDD|139158 PRK12692, flgG, flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional | Back alignment and domain information |
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>gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>gnl|CDD|183766 PRK12816, flgG, flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>gnl|CDD|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins | Back alignment and domain information |
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>gnl|CDD|183640 PRK12636, flgG, flagellar basal body rod protein FlgG; Provisional | Back alignment and domain information |
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>gnl|CDD|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>gnl|CDD|183685 PRK12690, flgF, flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>gnl|CDD|183684 PRK12689, flgF, flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>gnl|CDD|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>gnl|CDD|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>gnl|CDD|34398 COG4787, FlgF, Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|105809 PRK12641, flgF, flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>gnl|CDD|183769 PRK12819, flgG, flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>gnl|CDD|34397 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|181421 PRK08425, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon proteobacterial | Back alignment and domain information |
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>gnl|CDD|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional | Back alignment and domain information |
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>gnl|CDD|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|139117 PRK12643, flgF, flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>gnl|CDD|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional | Back alignment and domain information |
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>gnl|CDD|162884 TIGR02490, flgF, flagellar basal-body rod protein FlgF | Back alignment and domain information |
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>gnl|CDD|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|181421 PRK08425, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|131542 TIGR02489, flgE_epsilon, flagellar hook protein FlgE, epsilon proteobacterial | Back alignment and domain information |
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>gnl|CDD|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>gnl|CDD|148188 pfam06429, DUF1078, Domain of unknown function (DUF1078) | Back alignment and domain information |
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>gnl|CDD|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>gnl|CDD|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC | Back alignment and domain information |
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>gnl|CDD|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|183637 PRK12632, flgC, flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>gnl|CDD|183636 PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK | Back alignment and domain information |
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>gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|32000 COG1815, FlgB, Flagellar basal body protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|168176 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|180871 PRK07191, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion] | Back alignment and domain information |
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>gnl|CDD|181252 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|183698 PRK12715, flgK, flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
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>gnl|CDD|181438 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>gnl|CDD|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>gnl|CDD|109515 pfam00460, Flg_bb_rod, Flagella basal body rod protein | Back alignment and domain information |
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>gnl|CDD|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC | Back alignment and domain information |
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>gnl|CDD|183637 PRK12632, flgC, flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>gnl|CDD|162337 TIGR01396, FlgB, flagellar basal-body rod protein FlgB | Back alignment and domain information |
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>gnl|CDD|139220 PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>gnl|CDD|183630 PRK12623, flgB, flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>gnl|CDD|180196 PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | ||
TIGR02488 | 263 | flgG_G_neg flagellar basal-body rod protein FlgG; Inter | 100.0 | |
COG4786 | 265 | FlgG Flagellar basal body rod protein [Cell motility an | 100.0 | |
PRK12691 | 262 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12693 | 261 | flgG flagellar basal body rod protein FlgG; Provisional | 100.0 | |
PRK12816 | 264 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12692 | 262 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12694 | 260 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12636 | 263 | flgG flagellar basal body rod protein FlgG; Provisional | 100.0 | |
PRK12817 | 261 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12689 | 253 | flgF flagellar basal body rod protein FlgF; Reviewed | 100.0 | |
PRK12818 | 255 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12640 | 246 | flgF flagellar basal body rod protein FlgF; Reviewed | 100.0 | |
PRK12690 | 237 | flgF flagellar basal body rod protein FlgF; Reviewed | 100.0 | |
PRK05682 | 414 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
TIGR02490 | 254 | flgF flagellar basal-body rod protein FlgF; InterPro: I | 100.0 | |
PRK12819 | 257 | flgG flagellar basal body rod protein FlgG; Reviewed | 100.0 | |
PRK12642 | 241 | flgF flagellar basal body rod protein FlgF; Reviewed | 100.0 | |
TIGR03506 | 231 | FlgEFG_subfam fagellar hook-basal body proteins. This m | 100.0 | |
PRK06803 | 398 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
PRK12637 | 473 | flgE flagellar hook protein FlgE; Provisional | 100.0 | |
PRK12641 | 252 | flgF flagellar basal body rod protein FlgF; Reviewed | 100.0 | |
PRK05841 | 605 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
COG1749 | 423 | FlgE Flagellar hook protein FlgE [Cell motility and sec | 100.0 | |
COG4787 | 251 | FlgF Flagellar basal body rod protein [Cell motility an | 100.0 | |
PRK08425 | 716 | flgE flagellar hook protein FlgE; Validated | 100.0 | |
TIGR02489 | 877 | flgE_epsilon flagellar hook protein FlgE; InterPro: IPR | 100.0 | |
PRK12643 | 209 | flgF flagellar basal body rod protein FlgF; Reviewed | 100.0 | |
PRK05681 | 139 | flgC flagellar basal body rod protein FlgC; Reviewed | 99.8 | |
PRK12632 | 130 | flgC flagellar basal body rod protein FlgC; Provisional | 99.8 | |
PRK12628 | 140 | flgC flagellar basal body rod protein FlgC; Provisional | 99.76 | |
PRK12630 | 143 | flgC flagellar basal body rod protein FlgC; Provisional | 99.76 | |
PRK06802 | 141 | flgC flagellar basal body rod protein FlgC; Reviewed | 99.75 | |
TIGR01395 | 147 | FlgC flagellar basal-body rod protein FlgC; InterPro: I | 99.74 | |
PRK12629 | 135 | flgC flagellar basal body rod protein FlgC; Provisional | 99.73 | |
PRK12782 | 138 | flgC flagellar basal body rod protein FlgC; Reviewed | 99.73 | |
PRK12631 | 138 | flgC flagellar basal body rod protein FlgC; Provisional | 99.71 | |
COG1558 | 137 | FlgC Flagellar basal body rod protein [Cell motility an | 99.67 | |
PRK08471 | 612 | flgK flagellar hook-associated protein FlgK; Validated | 99.02 | |
PRK08871 | 626 | flgK flagellar hook-associated protein FlgK; Validated | 98.95 | |
pfam06429 | 39 | DUF1078 Domain of unknown function (DUF1078). This fami | 98.9 | |
PRK05683 | 676 | flgK flagellar hook-associated protein FlgK; Validated | 98.83 | |
PRK06945 | 649 | flgK flagellar hook-associated protein FlgK; Validated | 98.83 | |
PRK08147 | 547 | flgK flagellar hook-associated protein FlgK; Validated | 98.78 | |
PRK06004 | 126 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.76 | |
TIGR02492 | 495 | flgK_ends flagellar hook-associated protein FlgK; Inter | 98.62 | |
PRK12627 | 128 | flgB flagellar basal body rod protein FlgB; Provisional | 98.58 | |
PRK12714 | 624 | flgK flagellar hook-associated protein FlgK; Provisiona | 98.48 | |
PRK06665 | 628 | flgK flagellar hook-associated protein FlgK; Validated | 98.47 | |
PRK12715 | 649 | flgK flagellar hook-associated protein FlgK; Provisiona | 98.47 | |
COG1256 | 552 | FlgK Flagellar hook-associated protein [Cell motility a | 98.33 | |
COG1815 | 133 | FlgB Flagellar basal body protein [Cell motility and se | 93.26 | |
PRK05680 | 137 | flgB flagellar basal body rod protein FlgB; Reviewed | 92.2 | |
PRK07739 | 500 | flgK flagellar hook-associated protein FlgK; Validated | 99.77 | |
PRK07191 | 456 | flgK flagellar hook-associated protein FlgK; Validated | 99.6 | |
PRK06799 | 431 | flgK flagellar hook-associated protein FlgK; Validated | 99.56 | |
PRK06665 | 628 | flgK flagellar hook-associated protein FlgK; Validated | 99.08 | |
PRK12714 | 624 | flgK flagellar hook-associated protein FlgK; Provisiona | 98.9 | |
PRK12715 | 649 | flgK flagellar hook-associated protein FlgK; Provisiona | 98.89 | |
TIGR02492 | 495 | flgK_ends flagellar hook-associated protein FlgK; Inter | 98.8 | |
PRK08147 | 547 | flgK flagellar hook-associated protein FlgK; Validated | 98.75 | |
PRK08871 | 626 | flgK flagellar hook-associated protein FlgK; Validated | 98.73 | |
PRK08471 | 612 | flgK flagellar hook-associated protein FlgK; Validated | 98.69 | |
COG1256 | 552 | FlgK Flagellar hook-associated protein [Cell motility a | 98.62 | |
PRK06945 | 649 | flgK flagellar hook-associated protein FlgK; Validated | 98.58 | |
PRK05683 | 676 | flgK flagellar hook-associated protein FlgK; Validated | 98.5 | |
PRK07521 | 482 | flgK flagellar hook-associated protein FlgK; Validated | 99.52 | |
PRK06003 | 126 | flgB flagellar basal body rod protein FlgB; Reviewed | 99.14 | |
PRK12624 | 143 | flgB flagellar basal body rod protein FlgB; Provisional | 99.14 | |
PRK05680 | 137 | flgB flagellar basal body rod protein FlgB; Reviewed | 99.01 | |
PRK12622 | 135 | flgB flagellar basal body rod protein FlgB; Provisional | 98.98 | |
PRK12626 | 162 | flgB flagellar basal body rod protein FlgB; Provisional | 98.93 | |
PRK12619 | 130 | flgB flagellar basal body rod protein FlgB; Provisional | 98.92 | |
PRK12621 | 136 | flgB flagellar basal body rod protein FlgB; Provisional | 98.91 | |
COG1815 | 133 | FlgB Flagellar basal body protein [Cell motility and se | 98.88 | |
PRK12623 | 131 | flgB flagellar basal body rod protein FlgB; Provisional | 98.88 | |
PRK12620 | 132 | flgB flagellar basal body rod protein FlgB; Provisional | 98.87 | |
PRK06797 | 135 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.87 | |
PRK12625 | 132 | flgB flagellar basal body rod protein FlgB; Provisional | 98.85 | |
PRK12685 | 116 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.74 | |
PRK07182 | 148 | flgB flagellar basal body rod protein FlgB; Reviewed | 98.71 | |
pfam00460 | 31 | Flg_bb_rod Flagella basal body rod protein. | 98.65 | |
TIGR01396 | 134 | FlgB flagellar basal-body rod protein FlgB; InterPro: I | 96.66 | |
PRK12627 | 128 | flgB flagellar basal body rod protein FlgB; Provisional | 93.95 | |
PRK06004 | 126 | flgB flagellar basal body rod protein FlgB; Reviewed | 92.83 |
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes | Back alignment and domain information |
---|
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional | Back alignment and domain information |
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>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional | Back alignment and domain information |
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>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
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>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
---|
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
---|
>PRK05682 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria | Back alignment and domain information |
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>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed | Back alignment and domain information |
---|
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins | Back alignment and domain information |
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>PRK06803 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>PRK12637 flgE flagellar hook protein FlgE; Provisional | Back alignment and domain information |
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>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
---|
>PRK05841 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
---|
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion] | Back alignment and domain information |
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>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK08425 flgE flagellar hook protein FlgE; Validated | Back alignment and domain information |
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>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter) | Back alignment and domain information |
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>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed | Back alignment and domain information |
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>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
---|
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella | Back alignment and domain information |
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>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed | Back alignment and domain information |
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>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional | Back alignment and domain information |
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>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK08471 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK08871 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>pfam06429 DUF1078 Domain of unknown function (DUF1078) | Back alignment and domain information |
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>PRK05683 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
---|
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK08147 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
---|
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
---|
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway | Back alignment and domain information |
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>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
---|
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
---|
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
---|
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
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>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion] | Back alignment and domain information |
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>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK07739 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK07191 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK06799 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK06665 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
---|
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
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>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional | Back alignment and domain information |
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>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway | Back alignment and domain information |
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>PRK08147 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK08871 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK08471 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
---|
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion] | Back alignment and domain information |
---|
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
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>PRK05683 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
---|
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated | Back alignment and domain information |
---|
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
---|
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
---|
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion] | Back alignment and domain information |
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>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
---|
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
---|
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
---|
>pfam00460 Flg_bb_rod Flagella basal body rod protein | Back alignment and domain information |
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>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella | Back alignment and domain information |
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>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional | Back alignment and domain information |
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>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | ||
3a69_A | 402 | Atomic Model Of The Bacterial Flagellar Hook Based | 6e-19 | |
3a69_A | 402 | Atomic Model Of The Bacterial Flagellar Hook Based | 3e-15 | |
1wlg_A | 299 | Crystal Structure Of Flge31, A Major Fragment Of Th | 1e-04 |
>gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On Docking An X-Ray Derived Structure And Terminal Two Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem Map Length = 402 | Back alignment and structure |
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 1/163 (0%) Query: 100 GRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQIL 159 G T + T + SF + + P + +++ G ++ Sbjct: 241 GTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVV 300 Query: 160 AVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGY 219 + Q +GQ+++ANF N GL + GDN+ A T SG ++ F + G Sbjct: 301 GNYSNEQE-QVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGA 359 Query: 220 LEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 LEASNVD KE+ MI AQR Y+ N++ I+ D++ + + +R Sbjct: 360 LEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402 |
>gi|281306984|pdb|3A69|A Chain A, Atomic Model Of The Bacterial Flagellar Hook Based On Docking An X-Ray Derived Structure And Terminal Two Alpha- Helices Into An 7.1 Angstrom Resolution Cryoem Map Length = 402 | Back alignment and structure |
>gi|56554379|pdb|1WLG|A Chain A, Crystal Structure Of Flge31, A Major Fragment Of The Hook Protein Length = 299 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | ||
3a69_A | 402 | Flagellar HOOK protein FLGE; the bacterial flagellar mo | 1e-25 | |
3a69_A | 402 | Flagellar HOOK protein FLGE; the bacterial flagellar mo | 3e-21 | |
1wlg_A | 299 | Flagellar HOOK protein FLGE; EAR-& motif, structural pr | 3e-14 | |
1wlg_A | 299 | Flagellar HOOK protein FLGE; EAR-& motif, structural pr | 1e-09 |
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} Length = 402 | Back alignment and structure |
---|
Score = 112 bits (279), Expect = 1e-25 Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 21/217 (9%) Query: 4 FMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVV 63 F A +G++A TNL++I NNIAN T G+K A FAD Sbjct: 2 FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA------------------ 43 Query: 64 PEGISIGSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNI 123 G +G GV+++ + +T G +TG LD+A+ G+F++ + +V Y+R G F + Sbjct: 44 --GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL 101 Query: 124 DSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEA 183 D LV G L + + I + + N + Sbjct: 102 DENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTD 161 Query: 184 GLRNIGD-NLLARTSVSGDPIISNPDDIGFAHVKQGY 219 + + ++ S + ++ D G AH Y Sbjct: 162 PVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVY 198 |
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} Length = 402 | Back alignment and structure |
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>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A Length = 299 | Back alignment and structure |
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>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A Length = 299 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | ||
3a69_A | 402 | Flagellar HOOK protein FLGE; the bacterial flagellar mo | 100.0 | |
1wlg_A | 299 | Flagellar HOOK protein FLGE; EAR-& motif, structural pr | 100.0 |
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=374.28 Aligned_cols=239 Identities=35% Similarity=0.610 Sum_probs=213.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233 Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262) Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262) |||||+|||.|+|++|+|++|||||+|||||||+++.|++++. +.++|.||++.++.++| T Consensus 1 s~~~a~sGl~A~q~al~vts~NIANaNT~GYsRq~v~f~~~~~--------------------~~~~G~GV~v~~v~r~~ 60 (402) T 3a69_A 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA--------------------GSKVGLGVKVAGITQDF 60 (402) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------------- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHC--------------------CCCCCCCEEEEEEEEEC T ss_conf 9789999999999735788888987776420657020777646--------------------68776744776789841 Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------------CCCC- Q ss_conf 5787332652121232377526531489857787521223525883414667610443-----------------1013- Q gi|254780378|r 83 TQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------------IVIP- 144 (262) Q Consensus 83 ~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------------~~~p- 144 (262) .||.++.|++++|+||.|+|||.+..++|+.+|||.|+|.+|.+|+||+..|+.|++. +.++ T Consensus 61 ~qg~~~~t~~~~d~ai~~~g~f~~~~~~g~~~~tr~g~~~~~~~g~lvn~~g~~l~g~~~~~~~~~~~~~~~~~~~~i~~ 140 (402) T 3a69_A 61 TDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPN 140 (402) T ss_dssp ----------CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTCCCEECCCCC T ss_pred CCCCEEECCCCCHHEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 45645764760030142786178862798643641565342788878637896441231457775222567655521444 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780378|r 145 -------------------------------------------------------------------------------- 144 (262) Q Consensus 145 -------------------------------------------------------------------------------- 144 (262) T Consensus 141 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (402) T 3a69_A 141 TLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAAT 220 (402) T ss_dssp CCCCCBCCCEEEEEEEEETTCCCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCC T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCC T ss_conf 45676553036763024655556653444557765513333379985899726666787763788523797036665554 Q ss_pred -----------------------------------------------------------------CCCCCCCCCCCCEEE Q ss_conf -----------------------------------------------------------------565322101331255 Q gi|254780378|r 145 -----------------------------------------------------------------EETREIKVSRSGQIL 159 (262) Q Consensus 145 -----------------------------------------------------------------~~~~~i~i~~dG~I~ 159 (262) .....+.|++||.|. T Consensus 221 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dG~~~~~~~~~~i~~dG~v~ 300 (402) T 3a69_A 221 APTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVV 300 (402) T ss_dssp CCCSCSEEEEECTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEESCBCCCCEEEEEECTTCEEE T ss_pred CCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEE T ss_conf 66555226874146521457720002345456555431000011200135653112102466555421234217895599 Q ss_pred ECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21588654322211000002662001006886433466665520002467762068607300102349999999999999 Q gi|254780378|r 160 AVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQR 239 (262) Q Consensus 160 ~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR 239 (262) +.+.. +....++++.++.|.||..|.+.|+++|..+..+|.+..+.+.....++|.||+||.||||+.+||++||..|| T Consensus 301 ~~~~~-~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~~~~~~lE~S~V~ldeEmtnli~~Q~ 379 (402) T 3a69_A 301 GNYSN-EQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQR 379 (402) T ss_dssp EEETT-SCEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC---------CHHHHHHHHHHHH T ss_pred EEECC-CCCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHH T ss_conf 97356-54210011234566785773304796064355677730067887873148107545114799999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999987159 Q gi|254780378|r 240 AYEMNSKVIEAADEMSSLITKMR 262 (262) Q Consensus 240 ~ye~n~k~i~t~Dem~~~~~~lr 262 (262) +||+|+|+|++.|||+++++||| T Consensus 380 aY~A~akvitt~demld~linlk 402 (402) T 3a69_A 380 NYQSNAQTIKTQDQILNTLVNLR 402 (402) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99997526649999999997059 |
>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
262 | flagellar basal body rod protein FlgG [Candidatus Liber | |||
d1wlga_ | 293 | b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella | 2e-12 | |
d1wlga_ | 293 | b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella | 7e-10 |
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Length = 293 | Back information, alignment and structure |
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class: All beta proteins fold: Flagellar hook protein flgE superfamily: Flagellar hook protein flgE family: Flagellar hook protein flgE domain: Flagellar hook protein flgE species: Salmonella typhimurium [TaxId: 90371] Score = 66.9 bits (162), Expect = 2e-12 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 5/151 (3%) Query: 77 SVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNT 136 S T T + + V T+ A +F++ + G Sbjct: 144 SSDPAATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGAN 203 Query: 137 LVPGIVIPEETR----EIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNL 192 + +++ G ++ N Q +GQ+++ANF N GL + GDN+ Sbjct: 204 NIVATNQNGYKPGDLVSYQINNDGTVVG-NYSNEQEQVLGQIVLANFANNEGLASQGDNV 262 Query: 193 LARTSVSGDPIISNPDDIGFAHVKQGYLEAS 223 A T SG ++ F + G LEAS Sbjct: 263 WAATQASGVALLGTAGSGNFGKLTNGALEAS 293 |
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Length = 293 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | ||
d1wlga_ | 293 | Flagellar hook protein flgE {Salmonella typhimurium [Ta | 99.96 |
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: All beta proteins fold: Flagellar hook protein flgE superfamily: Flagellar hook protein flgE family: Flagellar hook protein flgE domain: Flagellar hook protein flgE species: Salmonella typhimurium [TaxId: 90371] Probab=99.96 E-value=4.2e-30 Score=199.68 Aligned_cols=129 Identities=33% Similarity=0.567 Sum_probs=114.8 Q ss_pred EEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------------CCCCCC---------- Q ss_conf 21232377526531489857787521223525883414667610443-----------------101356---------- Q gi|254780378|r 94 LDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------------IVIPEE---------- 146 (262) Q Consensus 94 lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------------~~~p~~---------- 146 (262) |||||+|+|||.|++++|+++|||+|+|++|++|+|||.+|++|+++ +.+|.. T Consensus 2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~~l~G~~~d~~~~~~~~~~~~~~i~i~~~~~~~~aTt~~ 81 (293) T d1wlga_ 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTA 81 (293) T ss_dssp EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTCCCEECCCCCCCBCCBCCCEE T ss_pred CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 64787487079987699988784488732989999883999989857636888631257765544344434577655146 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262) Q Consensus 147 -------------------------------------------------------------------------------- 146 (262) T Consensus 82 ~~~~NL~~~~~~~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~~~~~~~~l~F 161 (293) T d1wlga_ 82 SMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKF 161 (293) T ss_dssp EEEEEEETTCCCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCCCCSCSEEEEE T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEC T ss_conf 77416642123553222234787763301136764225864222056662046541378712566445466431356532 Q ss_pred --------------------------------------------------------CCCCCCCCCCEEEECCCCCCCCCC Q ss_conf --------------------------------------------------------532210133125521588654322 Q gi|254780378|r 147 --------------------------------------------------------TREIKVSRSGQILAVTGKNSDFQP 170 (262) Q Consensus 147 --------------------------------------------------------~~~i~i~~dG~I~~~~~~~~~~~~ 170 (262) ...+.|++||.|.+.+ .|+..++ T Consensus 162 ~~~G~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~~y-sNG~~~~ 240 (293) T d1wlga_ 162 NENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNY-SNEQEQV 240 (293) T ss_dssp CTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEEEE-TTSCEEE T ss_pred CCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEEEE-CCCCEEE T ss_conf 786322233310002344112432100025221000125740024432688431123210665875899997-6996789 Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH Q ss_conf 21100000266200100688643346666552000246776206860730010 Q gi|254780378|r 171 VGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEAS 223 (262) Q Consensus 171 i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~S 223 (262) ++||+|++|.||+.|+++|+++|+++.+||.+..+.|+..+.++|.+|+||.| T Consensus 241 lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S 293 (293) T d1wlga_ 241 LGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS 293 (293) T ss_dssp EEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC T ss_pred EEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC T ss_conf 88999997359687321259708760016885556899888223842613169 |
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus | ||
3a69_A_48-116_315-358 | 113 | (A:48-116,A:315-358) Flagellar HOOK protein FLGE; | 2e-25 | |
1wlg_A_1-46_245-281 | 83 | (A:1-46,A:245-281) Flagellar HOOK protein FLGE; EA | 2e-19 |
>3a69_A (A:48-116,A:315-358) Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}Length = 113 | Back alignment and structure |
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Score = 110 bits (277), Expect = 2e-25 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 36/149 (24%) Query: 70 GSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQL 129 G GV+++ + +T G +TG LD+A+ G+F++ + +V Y+R G F +D L Sbjct: 1 GLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNL 60 Query: 130 VTADGNTLVPGIVIPEETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIG 189 V G L ++ANF N GL + G Sbjct: 61 VNMQGMQL------------------------------------TVLANFANNEGLASQG 84 Query: 190 DNLLARTSVSGDPIISNPDDIGFAHVKQG 218 DN+ A T SG ++ F + G Sbjct: 85 DNVWAATQASGVALLGTAGSGNFGKLTNG 113 |
>1wlg_A (A:1-46,A:245-281) Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium}Length = 83 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | flagellar basal body rod protein FlgG [Candidatus Liber | ||
3a69_A_48-116_315-358 | 113 | Flagellar HOOK protein FLGE; the bacterial flagell | 99.95 | |
1wlg_A_1-46_245-281 | 83 | Flagellar HOOK protein FLGE; EAR-& motif, structur | 99.85 | |
1wlg_A_47-61_219-244_282-299 | 59 | Flagellar HOOK protein FLGE; EAR-& motif, structur | 94.59 |
>3a69_A (A:48-116,A:315-358) Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} | Back alignment and structure |
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Probab=99.95 E-value=4.3e-29 Score=195.93 Aligned_cols=113 Identities=33% Similarity=0.647 Sum_probs=107.5 Q ss_pred CCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 44202112322335787332652121232377526531489857787521223525883414667610443101356532 Q gi|254780378|r 70 GSGVQISSVRNVYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETRE 149 (262) Q Consensus 70 g~gv~~~~~~~~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~ 149 (262) |.||++.+++++|+||+++.|++|||+||+|+|||.|++++|+++|||+|+|++|++|||||.+|++|| T Consensus 1 G~Gv~~~~~~~~~~qG~l~~T~~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~ld~~G~Lvt~~G~~vl----------- 69 (113) T 3a69_A 1 GLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLT----------- 69 (113) T ss_dssp -----------------------CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEE----------- T ss_pred CCCEEEEEEEEEECCCCEEECCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------- T ss_conf 676477679996045545762645566622786036751578600013454220478871235674002----------- Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC Q ss_conf 210133125521588654322211000002662001006886433466665520002467762068607 Q gi|254780378|r 150 IKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQG 218 (262) Q Consensus 150 i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG 218 (262) +|++|+||+.|+++|++.|.++..+|+|.++.|+..++++|..| T Consensus 70 -------------------------al~~f~n~~gL~~~g~~~~~~t~~sG~~~~g~~g~~~~G~i~~G 113 (113) T 3a69_A 70 -------------------------VLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNG 113 (113) T ss_dssp -------------------------CEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC- T ss_pred -------------------------CCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEC T ss_conf -------------------------34566786774413784476133567730167887872547107 |
>1wlg_A (A:1-46,A:245-281) Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} | Back alignment and structure |
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>1wlg_A (A:47-61,A:219-244,A:282-299) Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} | Back alignment and structure |
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