HHsearch alignment for GI: 254780378 and conserved domain: COG1256
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion].
Probab=98.62 E-value=2.9e-08 Score=69.64 Aligned_cols=64 Identities=30% Similarity=0.551 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 04899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
T Consensus 5 s~lnta~sgl~a~q~~l~vtg~NIsNant~gYsRQrv~~~~~~----------------~~~~~~~~~G~Gv~V~sI~R~ 68 (552)
T COG1256 5 SLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVIQTTNI----------------PYLGGGLNVGTGVNVVSIQRL 68 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCC----------------CCCCCCCCCCCCEEEEEEEEH
T ss_conf 7799999999999999987561335689998630210432356----------------643576666676488863116