HHsearch alignment for GI: 254780378 and conserved domain: COG1749
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion].
Probab=100.00 E-value=0 Score=410.76 Aligned_cols=247 Identities=41% Similarity=0.649 Sum_probs=219.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~--------------~Gv~~s~i~~ 67 (423)
T COG1749 2 LRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTA--------------LGVGVSSISQ 67 (423)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--------------CCCEEEEEEE
T ss_conf 16776666667776640332023413454521132675066320100045544676--------------6714664588
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEC-CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-----------------CC
Q ss_conf 3357873326521212323775265314-89857787521223525883414667610443-----------------10
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVET-PDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-----------------IV 142 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~-~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-----------------~~ 142 (262)
T Consensus 68 i~~qG~~~~T~~~~DlAI~G~GFF~v~~~~~~~~~yTRaG~F~~D~~g~LVn~~G~~l~G~~~~~~~~~~~~~~~~~~i~ 147 (423)
T COG1749 68 IFTQGSFQSTGSNLDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNPAGLYLQGYPANGVTGGINGGTTLLNIQ 147 (423)
T ss_pred ECCCCCEEECCCCCCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 51588547647863579916717999716898458886675017678867768873797312468887511455533213
Q ss_pred CCCC----------------------------------------------------------------------------
Q ss_conf 1356----------------------------------------------------------------------------
Q gi|254780378|r 143 IPEE---------------------------------------------------------------------------- 146 (262)
Q Consensus 143 ~p~~---------------------------------------------------------------------------- 146 (262)
T Consensus 148 i~~~~~~~a~~tt~~~~~~NL~~~~~~~~~~~~~n~~~~~~~~~~~s~~~yDs~G~~~~~~~~f~k~~~~tw~v~~~~~~ 227 (423)
T COG1749 148 IPNNNGLPAKATTNVSFSANLNSGAIVPSITAPFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKS 227 (423)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 34566767643206522101487775653467878765321145315999926895123567999447871269999435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 228 ~~~~p~g~a~~~~~~~l~Fd~~G~L~s~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~ 307 (423)
T COG1749 228 QTGDPDGTADTGTTFTLEFDPAGALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGN 307 (423)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEE
T ss_conf 66688876666642578877988601278886434466656576300220453257754885130013456336755305
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 53221013312552158865432221100000266200100688643346666552000246776206860730010234
Q gi|254780378|r 147 TREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVD 226 (262)
Q Consensus 147 ~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd 226 (262)
T Consensus 308 l~~~~I~~dG~I~~~ys-NG~~~~~gqIaLa~F~N~~GL~~~ggN~~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVD 386 (423)
T COG1749 308 LKDYRIDEDGVIVGVYS-NGVTQPLGQIALANFANPQGLVKEGGNVYAATNNSGAASLGAAGVGGFGKISSGALEMSNVD 386 (423)
T ss_pred EEEEEECCCCEEEEEEE-CCCEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEEECCCCCEECCCH
T ss_conf 77899779978999971-88264666788773048010621589578511567861444688787302501633211211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999999999999987159
Q gi|254780378|r 227 AVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 227 ~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
T Consensus 387 ls~EltnmIvaQR~YqANsK~i~T~D~mlq~lvnLk 422 (423)
T COG1749 387 LAKELTNLIVAQRGYQANAKVITTSDQMLQTLVNLK 422 (423)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHC
T ss_conf 899999988866504445506860589999998622