HHsearch alignment for GI: 254780378 and conserved domain: COG4786
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=528.95 Aligned_cols=259 Identities=47% Similarity=0.792 Sum_probs=245.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~r~ly~a~sGM~aqq~kld~IsNNlANvNT~GfK~~~a~F~dll~q~~~~~~~~~--~~~~~~p~~~~vg~Gv~~~~~~~ 79 (265)
T COG4786 2 LRGLYTAASGMMAQQRKLDVISNNLANVNTTGFKRDRAEFEDLLYQTINTAGAPN--SNSTTSPSGGQVGLGVRVNETYT 79 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCCCCCCCCCEECCCEEEEEEEE
T ss_conf 0578898778999998655652120237775504454506999999874268877--66644665525665414424786
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----31013565322101331
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSG 156 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG 156 (262)
T Consensus 80 ~~tqGsl~~T~n~lD~AI~g~gfF~I~~~dG~~~YTR~G~F~~d~~G~LVT~~G~~vl~~~G~~i~i~~~~~~i~i~~dG 159 (265)
T COG4786 80 VFTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVDEEGQLVTSNGYPVLDSGGNPITIPNNAGSITIGKDG 159 (265)
T ss_pred ECCCCCCEECCCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCEECCCCCEEEEECCCC
T ss_conf 40446741069854358747826999849987888527744688998788079977457888724528874455532564
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 25521588654322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 157 QILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 157 ~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
T Consensus 160 ~v~~~~~~~~~~~~~g~i~lv~f~n~~gL~k~G~nl~~~t~~sg-~~~~~~~~~~~g~i~QG~lE~SNVn~v~EMt~mI~ 238 (265)
T COG4786 160 TVSVTIRGNTDPVQVGQIGLVNFDNPAGLKKIGNNLYQETAASG-PIVGVPGDNGFGAIRQGFLEASNVNVVEEMTDMIE 238 (265)
T ss_pred EEEEEECCCCCCEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHH
T ss_conf 47899658866147536889981380664330775310168877-75467787875527864121205679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999987159
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
T Consensus 239 aqRayE~nsK~i~~~D~m~~~~~n~~ 264 (265)
T COG4786 239 AQRAYEANSKVIQTADEMLGKANNLL 264 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999988788665899999998654