HHsearch alignment for GI: 254780378 and conserved domain: COG4787

>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion].
Probab=100.00  E-value=0  Score=354.56  Aligned_cols=240  Identities=28%  Similarity=0.420  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             04899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r    2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV   81 (262)
Q Consensus         2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~   81 (262)
T Consensus         3 ~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav~-----v~g------------~~~ptrt~~~~s~pg~d   65 (251)
T COG4787           3 HAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQ-----VHG------------DSLPTRTFVMASTPGTD   65 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC-----CCC------------CCCCHHEEEECCCCCCC
T ss_conf             3789887888888998887751421356631789998863012-----468------------87520103541467656


Q ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEE
Q ss_conf             3578733265212123237752653148985778752122352588341466761044---3101356532210133125
Q gi|254780378|r   82 YTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQI  158 (262)
Q Consensus        82 ~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~I  158 (262)
T Consensus        66 ~spG~l~~TgR~LDvaiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g-~lTiqg~pViG~ggpI~vPp~-~~v~I~~DGtI  143 (251)
T COG4787          66 MSPGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNIQIDATG-QLTIQGHPVIGEGGPITVPPG-AKVTIAADGTI  143 (251)
T ss_pred             CCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHEECCCEEECCCC-CEECCCCEEECCCCCCCCCCC-CEEEEECCCEE
T ss_conf             7886101368853079736856999868875011115746787654-151279711158985326998-65898038558


Q ss_pred             EECCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             52158865--4322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r  159 LAVTGKNS--DFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS  236 (262)
Q Consensus       159 ~~~~~~~~--~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~  236 (262)
T Consensus       144 sa~~~g~~~~~va~vgrlKLV~-~~~~~~~~g~dGLF~l~~e~~q~~~~~~~~d~~vrV~sG~LE~SNVnav~~Mt~mI~  222 (251)
T COG4787         144 SALNPGDPANTVAVVGRLKLVQ-ATGQEVQRGDDGLFRLTAETQQPRGQVLKADPSVRVMSGALEGSNVNAVEEMTDMIS  222 (251)
T ss_pred             EECCCCCCCCCEEECCEEEEEE-CCHHHHHCCCCCEEEECHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             7316899998410103068960-686885148885078235334877664567973465114134565337999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999998715
Q gi|254780378|r  237 AQRAYEMNSKVIEAADEMSSLITKM  261 (262)
Q Consensus       237 ~qR~ye~n~k~i~t~Dem~~~~~~l  261 (262)
T Consensus       223 ~aRqfEmqmKmist~d~na~~anqL  247 (251)
T COG4787         223 LARQFEMQMKMISTADDNAGAANQL  247 (251)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             8888898898875421006889878