HHsearch alignment for GI: 254780378 and conserved domain: PRK05682
>PRK05682 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=451.31 Aligned_cols=245 Identities=38% Similarity=0.673 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
T Consensus 2 sl~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~-------------~~~~~g~Gv~~~~~~~~~ 68 (414)
T PRK05682 2 SFNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSN-------------SGSQVGLGVKTAGVAQQF 68 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCC-------------CCCCCCCCEEEEEEEEEC
T ss_conf 5889999999998601677677876775300877551678652125678-------------887434417851588763
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC-------------------CCCC
Q ss_conf 578733265212123237752653148985778752122352588341466761044-------------------3101
Q gi|254780378|r 83 TQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP-------------------GIVI 143 (262)
Q Consensus 83 ~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~-------------------~~~~ 143 (262)
T Consensus 69 ~qG~~~~T~~~~D~ai~G~GfF~v~~-~~~~~yTR~G~F~~d~~G~Lv~~~G~~l~G~~~d~~~~~~~~~~~~~l~~I~i 147 (414)
T PRK05682 69 TQGTITSTGNSLDLAISGNGFFVVSS-NGSVFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPNGVQNANLVPLQI 147 (414)
T ss_pred CCCCEEECCCCCEEEECCCCEEEECC-CCCEEEEECCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEC
T ss_conf 77785777983217873774388648-99568885561888558819859999887045047887544334577443460
Q ss_pred CCC-----------------------------------------------------------------------------
Q ss_conf 356-----------------------------------------------------------------------------
Q gi|254780378|r 144 PEE----------------------------------------------------------------------------- 146 (262)
Q Consensus 144 p~~----------------------------------------------------------------------------- 146 (262)
T Consensus 148 ~~~~~~~~~Tt~~~~~~NL~~~~~~~~~~~~~~~~~~~~~~~t~~~vyDs~G~~~~l~~~f~k~~~n~w~~~~~~~~~~~ 227 (414)
T PRK05682 148 PTTALAPKATTTVTFQGNLNSTAPVPAVTPFDPTDADTYNKSTSVTVYDSLGNSHTLDVYFVKTGDNTWQVYVYDDGKAV 227 (414)
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 47667864310576630147777566666667778765320345998868997489999999658980689997478765
Q ss_pred ------------------------------------------------------------------------CCCCCCCC
Q ss_conf ------------------------------------------------------------------------53221013
Q gi|254780378|r 147 ------------------------------------------------------------------------TREIKVSR 154 (262)
Q Consensus 147 ------------------------------------------------------------------------~~~i~i~~ 154 (262)
T Consensus 228 ~~~~~~~~~~~~~~~~~l~F~~~G~l~~~~~~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~ 307 (414)
T PRK05682 228 DGPTTPTGTAGTTTAGTLTFDSNGALTSFTIAINGGATPAGTLTLDLSGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDD 307 (414)
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 66655455556565421687688724246665556778774068724564022146654221135772223046678889
Q ss_pred CCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 31255215886543222110000026620010068864334666655200024677620686073001023499999999
Q gi|254780378|r 155 SGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEM 234 (262)
Q Consensus 155 dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~l 234 (262)
T Consensus 308 dG~i~a~~sN-G~~~~l~qi~la~F~N~~gL~~~g~n~y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~m 386 (414)
T PRK05682 308 DGTVVATYSN-GQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDM 386 (414)
T ss_pred CCEEEEEECC-CCEEEEEEEEEEEECCHHHHHHHCCCEEECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHH
T ss_conf 9679999779-957787688788626978977524971764111587533689988712485364050017799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999987159
Q gi|254780378|r 235 ISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 235 I~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
T Consensus 387 I~~QRaYqANskvItTsDemLq~linlK 414 (414)
T PRK05682 387 IVAQRNYQANAKTIKTQDQLLQTLVNLR 414 (414)
T ss_pred HHHHHHHHHHHEEEEEHHHHHHHHHHCC
T ss_conf 9998774674034561999999997259