HHsearch alignment for GI: 254780378 and conserved domain: PRK05841
>PRK05841 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=427.01 Aligned_cols=253 Identities=29% Similarity=0.488 Sum_probs=212.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~~SlysGVSGL~a~~~~ldvIgNNIANvnT~GfK~sr~~F~dl~sq~~~~~~~~~--------~~~~~~g~Gv~~~~~~~ 73 (605)
T PRK05841 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKS--------VVANDRNYGVTGSGNVL 73 (605)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC--------CCCCCCCCCEEEEEEEE
T ss_conf 1788899999999875442330243416762115553537876654304466777--------65675356658777788
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEC-CCC-------------CEEEEEEEEEEECCCCCCCCCCCCCCCCC------
Q ss_conf 3357873326521212323775265314-898-------------57787521223525883414667610443------
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVET-PDK-------------TVMYTRAGSFNIDSKGQLVTADGNTLVPG------ 140 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~-~~G-------------~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~------ 140 (262)
T Consensus 74 ~~~qGsl~~T~~~tDlAI~G~GFF~V~~~~~g~~~~~~~g~~~~~~~~YTRaG~F~~D~~G~LV~~~G~~vqG~~~~~~~ 153 (605)
T PRK05841 74 SNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEFTINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIK 153 (605)
T ss_pred ECCCCCEEECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCEEECCCCCCCC
T ss_conf 70466647569840489817717986227887411146655655662472377753899997887998879773046566
Q ss_pred -----------------------CCCCCC---------------------------------------------------
Q ss_conf -----------------------101356---------------------------------------------------
Q gi|254780378|r 141 -----------------------IVIPEE--------------------------------------------------- 146 (262)
Q Consensus 141 -----------------------~~~p~~--------------------------------------------------- 146 (262)
T Consensus 154 ~g~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~p~~Tt~v~~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (605)
T PRK05841 154 DGTLNSTARDEDIEKLHGNTLSPLQIPQDLTYQPVLSTKVGISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALA 233 (605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77434556665432113675343154654545873431786867527765566553100257664222221244543223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 313 (605)
T PRK05841 234 NDDNEPIDAITNRKLNISIQKENGKKEDFVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIA 313 (605)
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEC
T ss_conf 56777556644430568885158872027998336656766303202100000135564101211467777663257503
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (605)
T PRK05841 314 NPSQTPITFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKR 393 (605)
T ss_pred CCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 78754136750453100013356653235565445433234432243377516887046546788703688676664334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780378|r 147 -------------------------------------------------------------------------------- 146 (262)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (262)
T Consensus 394 ~~~~~~~~s~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~qdG 473 (605)
T PRK05841 394 KNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDG 473 (605)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEECCCCEEEECCCC
T ss_conf 55410343332067775334676301343057777666775355047871465145454555531440232014533688
Q ss_pred -----CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCC
Q ss_conf -----5322101331255215886543222110000026620010068864334666---------65520002467762
Q gi|254780378|r 147 -----TREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSV---------SGDPIISNPDDIGF 212 (262)
Q Consensus 147 -----~~~i~i~~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~---------~g~~~~~~~~~~~~ 212 (262)
T Consensus 474 ~~~G~L~~~~Id~dG~I~g~y-sNG~~~~l~qIalA~F~N~~GL~~~G~n~y~~T~~s~~~~~~~~SG~~~~g~~g~G~~ 552 (605)
T PRK05841 474 KPRGIFRDMRIEENGVISLAF-SNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKL 552 (605)
T ss_pred CCEEEEEEEEECCCCEEEEEE-CCCCEEEEEEEEEEEECCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 003677778989994899998-6996878899989853685772322695565212554566656778734335777887
Q ss_pred --EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --06860730010234999999999999999999999999999999987159
Q gi|254780378|r 213 --AHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 213 --~~v~qG~LE~SNVd~~~Emv~lI~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
T Consensus 553 ~~GsI~~~aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLK 604 (605)
T PRK05841 553 KFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 (605)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHC
T ss_conf 6431624762013305899999999987652054127876899999998625