HHsearch alignment for GI: 254780378 and conserved domain: PRK06665
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated.
Probab=99.08 E-value=8.9e-11 Score=84.96 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
T Consensus 7 ~L~ig~sgL~a~Q~aL~ttg~NIANvnT~GYsRQ~v~~~a~~---------p~~~~~~~~~~~~G~~G~GV~v~~I~R~~ 77 (628)
T PRK06665 7 GIEIGKRSLFAHKQAMQTTGHNISNASKPGYSRQRVTMKTED---------PLYAPQLNRANKPGQIGQGVTIQSIERVR 77 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC---------CCCCCCCCCCCCCCCCCCCEEEEEEEEHH
T ss_conf 699999999999999998857664179988052176641236---------64456545455678767888972798715