HHsearch alignment for GI: 254780378 and conserved domain: PRK06799
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated.
Probab=99.56 E-value=8.1e-15 Score=109.53 Aligned_cols=67 Identities=27% Similarity=0.360 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 04899999999999965999775421777340000222999998764025676655566545666311442021123223
Q gi|254780378|r 2 KAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNV 81 (262)
Q Consensus 2 r~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 81 (262)
T Consensus 4 S~~n~a~SGl~A~q~al~vts~NIANanT~GYsRq~v~~~~~~~-------------~~-~~~~~~~~G~GV~v~~v~R~ 69 (431)
T PRK06799 4 SDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSVGA-------------SG-GLLPEQRIGYGVQTLGVDRI 69 (431)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC-------------CC-CCCCCCCCCCCEEEEEEEEH
T ss_conf 24569999999999999988785740799890614722013467-------------87-77777755578898068871
Q ss_pred C
Q ss_conf 3
Q gi|254780378|r 82 Y 82 (262)
Q Consensus 82 ~ 82 (262)
T Consensus 70 ~ 70 (431)
T PRK06799 70 T 70 (431)
T ss_pred H
T ss_conf 5