HHsearch alignment for GI: 254780378 and conserved domain: PRK06803
>PRK06803 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=441.19 Aligned_cols=237 Identities=34% Similarity=0.545 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
T Consensus 2 S~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~~F~dl~~~~---------------------~~gGv~~~~~~~~~ 60 (398)
T PRK06803 2 SFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFASIYNGG---------------------QAGGVEVSSVSQNF 60 (398)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCC---------------------CCCCEEEEEEEEEE
T ss_conf 689999999998856436635777578531075620546754766---------------------77854876777776
Q ss_pred CC-CCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC---------------CCC--
Q ss_conf 57-873326521212323775265314898577875212235258834146676104431---------------013--
Q gi|254780378|r 83 TQ-GEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGI---------------VIP-- 144 (262)
Q Consensus 83 ~q-G~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~---------------~~p-- 144 (262)
T Consensus 61 ~~~G~l~~T~~~~DlAI~G~GFF~V~~~~g~~~YTRaG~F~~D~~G~Lv~~~G~~l~G~~~d~~g~~~~~~~~~i~i~~~ 140 (398)
T PRK06803 61 SKGGSLTYTGRGLDLAISGGGFFVLKGSDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNIQTGNVSDLQVQTA 140 (398)
T ss_pred ECCCCEEECCCCEEEEECCCCEEEEECCCCCEEEECCCEEEEEECCEEEECCCCEEECEEECCCCCCCCCCCCCEEECCC
T ss_conf 06887566698026998168679997699856675274189933787990899867453606888510266320340157
Q ss_pred -----------------------C--------------------------------------------------------
Q ss_conf -----------------------5--------------------------------------------------------
Q gi|254780378|r 145 -----------------------E-------------------------------------------------------- 145 (262)
Q Consensus 145 -----------------------~-------------------------------------------------------- 145 (262)
T Consensus 141 ~~~~~aTt~~~~~~nl~a~~~~~~~~~~~~~~~~~~~~~~~~~vyDs~G~~~~v~~~f~kt~~n~w~~~~~~~~~~~~~~ 220 (398)
T PRK06803 141 SLPAKATDQLDFVANLDASVTDPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPP 220 (398)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 66864322067886247766667656568887763001112899846897257899999658971689997578755774
Q ss_pred --------------------------------------------------------------CCCCCCCCCCCEEEECCC
Q ss_conf --------------------------------------------------------------653221013312552158
Q gi|254780378|r 146 --------------------------------------------------------------ETREIKVSRSGQILAVTG 163 (262)
Q Consensus 146 --------------------------------------------------------------~~~~i~i~~dG~I~~~~~ 163 (262)
T Consensus 221 ~~l~F~~~G~l~~~~~~~~~~~~~~~~~g~~~~~i~l~~~~~tq~~~~~~~~~~~qdG~~~G~l~~~~I~~dG~I~~~ys 300 (398)
T PRK06803 221 LTLQFDDTGALIPGKGSTINLHDTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSDGYTSGELNGVRIEDNGMVYATYT 300 (398)
T ss_pred EEEEECCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCEEEEEEC
T ss_conf 47898788846457764200144457787664358864776357436654100146875543232379888986999954
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86543222110000026620010068864334666655200024677620686073001023499999999999999999
Q gi|254780378|r 164 KNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEM 243 (262)
Q Consensus 164 ~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ye~ 243 (262)
T Consensus 301 -NG~~~~lgqIala~F~Np~gL~~~G~n~f~~T~~SG~~~~g~~g~~g~G~i~~gaLE~SNVDla~Eft~mI~tQR~yqA 379 (398)
T PRK06803 301 -NGQEQLQGQVVLANFANPNGLVTVSNTAWSASNKSGQAILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQA 379 (398)
T ss_pred -CCCEEEEEEEEEEEECCHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHCHHHHHHHHHHHHHHHHHH
T ss_conf -8743677689899733836550047945864346788676579988851283274631314099999999999876356
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998715
Q gi|254780378|r 244 NSKVIEAADEMSSLITKM 261 (262)
Q Consensus 244 n~k~i~t~Dem~~~~~~l 261 (262)
T Consensus 380 NskvItT~DemlqelvN~ 397 (398)
T PRK06803 380 NAKVISTNDTMQQALFNA 397 (398)
T ss_pred HCEEEEEHHHHHHHHHHH
T ss_conf 424887489999999740