HHsearch alignment for GI: 254780378 and conserved domain: PRK08425

>PRK08425 flgE flagellar hook protein FlgE; Validated.
Probab=100.00  E-value=0  Score=452.60  Aligned_cols=136  Identities=36%  Similarity=0.617  Sum_probs=120.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r    1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN   80 (262)
Q Consensus         1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~   80 (262)
T Consensus         2 ~rSlytGvSGL~a~~~~mdVigNNIANvNTvGfK~sr~~F~dl~sqt~~~a~~p~~~---~gg~n~~QvG~Gv~v~si~~   78 (716)
T PRK08425          2 LRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKKIATAPQGG---LGGQNPFQIGLGVSVSSTTK   78 (716)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC---CCCCCCCEEECCEEEEEEEE
T ss_conf             067777888898753000000141220564230555551888775543024566667---68867752604476667774


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             335787332652121232377526531489857-78752122352588341466761044
Q gi|254780378|r   81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVP  139 (262)
Q Consensus        81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~  139 (262)
T Consensus        79 ~f~QGsl~~T~~~tDlAI~G~GFFvV~~~~g~~~~YTRaG~F~~D~~G~LVn~~G~~vqG  138 (716)
T PRK08425         79 IFSQGSVQNTDKNTDLAIQGDGFFIVSPDGGITRYYTRDGDFKFDAQGNFVNNAGFVVQG  138 (716)
T ss_pred             ECCCCCCEECCCCCEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCCCEECCCCCEEEE
T ss_conf             325767155698411898275489983289861157037664488998678899988870