HHsearch alignment for GI: 254780378 and conserved domain: PRK08425
>PRK08425 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=452.60 Aligned_cols=136 Identities=36% Similarity=0.617 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~rSlytGvSGL~a~~~~mdVigNNIANvNTvGfK~sr~~F~dl~sqt~~~a~~p~~~---~gg~n~~QvG~Gv~v~si~~ 78 (716)
T PRK08425 2 LRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKKIATAPQGG---LGGQNPFQIGLGVSVSSTTK 78 (716)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC---CCCCCCCEEECCEEEEEEEE
T ss_conf 067777888898753000000141220564230555551888775543024566667---68867752604476667774
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 335787332652121232377526531489857-78752122352588341466761044
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTV-MYTRAGSFNIDSKGQLVTADGNTLVP 139 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~-~yTR~G~f~~d~~G~Lvt~~G~~vl~ 139 (262)
T Consensus 79 ~f~QGsl~~T~~~tDlAI~G~GFFvV~~~~g~~~~YTRaG~F~~D~~G~LVn~~G~~vqG 138 (716)
T PRK08425 79 IFSQGSVQNTDKNTDLAIQGDGFFIVSPDGGITRYYTRDGDFKFDAQGNFVNNAGFVVQG 138 (716)
T ss_pred ECCCCCCEECCCCCEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCCCEECCCCCEEEE
T ss_conf 325767155698411898275489983289861157037664488998678899988870