HHsearch alignment for GI: 254780378 and conserved domain: PRK08871
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated.
Probab=98.73 E-value=1.9e-08 Score=70.74 Aligned_cols=65 Identities=26% Similarity=0.423 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48999999999999659997754217773400002229999987640256766555665456663114420211232233
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRNVY 82 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~ 82 (262)
T Consensus 5 ll~ig~sgL~a~Q~al~vtg~NIANanT~GYsRq~v~~~~~---------~~-------~~~~~~~~G~GV~v~~I~R~~ 68 (626)
T PRK08871 5 LLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTN---------DP-------RQFGGSTYGMGVHVENVRRSW 68 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC---------CC-------CCCCCCCCCCCEEEEEEEECH
T ss_conf 89999999999999999874766516998805105654045---------76-------234787203678983799815
Q ss_pred C
Q ss_conf 5
Q gi|254780378|r 83 T 83 (262)
Q Consensus 83 ~ 83 (262)
T Consensus 69 D 69 (626)
T PRK08871 69 D 69 (626)
T ss_pred H
T ss_conf 2