HHsearch alignment for GI: 254780378 and conserved domain: PRK12636
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional.
Probab=100.00 E-value=0 Score=504.57 Aligned_cols=257 Identities=36% Similarity=0.608 Sum_probs=233.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~r~lYta~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~---~~~~~~~~~g~g~~~~~~~~ 78 (263)
T PRK12636 2 LRSMYSGISGMKNFQTKLDVIGNNIANVNTVGYKKSRVTFKDMVSQTISGASGPTAN---RGGVNSKQVGLGSTLGSIDT 78 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCC---CCCCCCCEEECCEEEEEEEE
T ss_conf 658999999999999978899899987776544847231899988763146776656---67766512302125424675
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----31013565322101331
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSG 156 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG 156 (262)
T Consensus 79 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~g~pI~ip~~~~~~~I~~dG 157 (263)
T PRK12636 79 IHTQGSLQTTGRPLDLAISGDGYFRVGSGDE-TYYTRAGNFYLDNEGNLVNADGLYLLGMNGGRINIPTDAQSFSIGPDG 157 (263)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEECCCCC-EEEEEECCEEECCCCCEECCCCCEEECCCCCCCCCCCCCCEEEECCCC
T ss_conf 4278771436982118985887788749997-479970458898998888699998068999876468887258875885
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 25521588654322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 157 QILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 157 ~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
T Consensus 158 ~i~~~~~~-g~~~~vg~l~l~~f~~~~~L~~~G~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVn~~~Emv~mI~ 236 (263)
T PRK12636 158 TVSYVDAN-GENQTAGQIGLATFANPSGLEKAGNNLYRETLNSGAPQVVVPGEGGTGKIQSGALEMSNVDLSEEFTEMIV 236 (263)
T ss_pred EEEEECCC-CCCEEEEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHHHHHHH
T ss_conf 28896079-95036789899951686873005896375136677755467787876416038476134759999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999987159
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
T Consensus 237 ~qRaye~n~K~i~~~De~~~~~~nl~ 262 (263)
T PRK12636 237 AQRGFQANTRIITTSDEILQELVNLK 262 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999889999999999999745