HHsearch alignment for GI: 254780378 and conserved domain: PRK12640
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=455.51 Aligned_cols=237 Identities=31% Similarity=0.444 Sum_probs=200.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~r~ly~a~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~ 64 (246)
T PRK12640 2 DKALYTAMSGASQNLNQQAVHANNLANASTPGFRADLAQARAVPVFG---EGL--------------PTRVFALASTPGA 64 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHCCC---CCC--------------CCCEEEEECCCCE
T ss_conf 14899999999999985788988888677776601456454002248---777--------------7303675034411
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044---310135653221013312
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~ 157 (262)
T Consensus 65 d~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~gpI~ip~~-~~~~I~~dG~ 143 (246)
T PRK12640 65 DFTPGPIQTTGRPLDVALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLVTANGLPVLGDGGPIAVPPG-AKITIGADGT 143 (246)
T ss_pred EECCCCEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEEECCCCCEECCCC-CCEEECCCCE
T ss_conf 417887355698330887699579998799854257756289999998892789896579996345898-7347757865
Q ss_pred EEECCCCC--CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 55215886--5432221100000266200100688643346666552000246776206860730010234999999999
Q gi|254780378|r 158 ILAVTGKN--SDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMI 235 (262)
Q Consensus 158 I~~~~~~~--~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI 235 (262)
T Consensus 144 i~~~~~g~~~~~~~~vg~l~lv~~-~~~~l~k~~~~l~~~~~~~~~~------~~~~~~v~qG~LE~SNV~~~~Em~~mI 216 (246)
T PRK12640 144 ISILPQGDPPNTVAEVGRIKLVNP-PANQLTRGDDGLFRLKSGAPAP------ADPNVRVVSGALEGSNVNAVEEMVSMI 216 (246)
T ss_pred EEEEECCCCCCCCEEEEEEEEECC-CHHHCEECCCCCEECCCCCCCC------CCCCCEEEECCEECCCCCHHHHHHHHH
T ss_conf 999637987442124426899538-7355011489737647888777------788742764515323567999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999987159
Q gi|254780378|r 236 SAQRAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 236 ~~qR~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
T Consensus 217 ~~qRaye~n~k~i~~~Dem~~~an~l~ 243 (246)
T PRK12640 217 ALARQFEMQVKMMKTADDNAQAANQLL 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998999999999874