HHsearch alignment for GI: 254780378 and conserved domain: PRK12643

>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00  E-value=0  Score=319.10  Aligned_cols=200  Identities=25%  Similarity=0.347  Sum_probs=162.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r    1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN   80 (262)
Q Consensus         1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~   80 (262)
T Consensus         2 dr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g------~-----------~~~~~~~~~~~~~~~   64 (209)
T PRK12643          2 DHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDG------P-----------SLATRTMVTTSTPGV   64 (209)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCC------C-----------CCCCCCEEEECCCCE
T ss_conf             26899999999999998889988877478764431045342312247------7-----------765331133046504


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCE
Q ss_conf             33578733265212123237752653148985778752122352588341466761044---310135653221013312
Q gi|254780378|r   81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQ  157 (262)
Q Consensus        81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~  157 (262)
T Consensus        65 d~~qG~l~~Tg~~LDlAI~G~GfF~V~~~~G~~aYTR~G~f~vd~~G~L-t~~G~~Vlg~~GpI~iP~~~-~i~I~~DGt  142 (209)
T PRK12643         65 DISQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLMGDNGPIDVPPQA-AVTIAADGT  142 (209)
T ss_pred             ECCCCCEEECCCCEEEEEECCCEEEEECCCCCEEEEECCCEEECCCCCE-EECCCEEECCCCCEECCCCC-EEEECCCCE
T ss_conf             6167573515983039980895899985899567887887159999879-76985821699885749998-389868977


Q ss_pred             EEECCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH
Q ss_conf             552158865--43222110000026620010068864334666655200024677620686073001
Q gi|254780378|r  158 ILAVTGKNS--DFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA  222 (262)
Q Consensus       158 I~~~~~~~~--~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~  222 (262)
T Consensus       143 Vsv~~~g~~~~~~~~vgql~lv~-~~~~~l~k~~dGLF~~t~~~~~a~g~~~p~~--p~v~~g~~e~  206 (209)
T PRK12643        143 ISALNAGDSPNTIAQLGQIKRVQ-ATAGEMMHGDDGLFHLTPETQQARGAQLPND--PLVKPGEREH  206 (209)
T ss_pred             EEEECCCCCCCCCEECCEEEEEC-CCHHHCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCC
T ss_conf             99970899965001403678617-9978850468888783576556668989989--8325651234