HHsearch alignment for GI: 254780378 and conserved domain: PRK12643
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=319.10 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 dr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g------~-----------~~~~~~~~~~~~~~~ 64 (209)
T PRK12643 2 DHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDG------P-----------SLATRTMVTTSTPGV 64 (209)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCC------C-----------CCCCCCEEEECCCCE
T ss_conf 26899999999999998889988877478764431045342312247------7-----------765331133046504
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044---310135653221013312
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP---GIVIPEETREIKVSRSGQ 157 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~---~~~~p~~~~~i~i~~dG~ 157 (262)
T Consensus 65 d~~qG~l~~Tg~~LDlAI~G~GfF~V~~~~G~~aYTR~G~f~vd~~G~L-t~~G~~Vlg~~GpI~iP~~~-~i~I~~DGt 142 (209)
T PRK12643 65 DISQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLMGDNGPIDVPPQA-AVTIAADGT 142 (209)
T ss_pred ECCCCCEEECCCCEEEEEECCCEEEEECCCCCEEEEECCCEEECCCCCE-EECCCEEECCCCCEECCCCC-EEEECCCCE
T ss_conf 6167573515983039980895899985899567887887159999879-76985821699885749998-389868977
Q ss_pred EEECCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH
Q ss_conf 552158865--43222110000026620010068864334666655200024677620686073001
Q gi|254780378|r 158 ILAVTGKNS--DFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEA 222 (262)
Q Consensus 158 I~~~~~~~~--~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~ 222 (262)
T Consensus 143 Vsv~~~g~~~~~~~~vgql~lv~-~~~~~l~k~~dGLF~~t~~~~~a~g~~~p~~--p~v~~g~~e~ 206 (209)
T PRK12643 143 ISALNAGDSPNTIAQLGQIKRVQ-ATAGEMMHGDDGLFHLTPETQQARGAQLPND--PLVKPGEREH 206 (209)
T ss_pred EEEECCCCCCCCCEECCEEEEEC-CCHHHCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCC
T ss_conf 99970899965001403678617-9978850468888783576556668989989--8325651234