HHsearch alignment for GI: 254780378 and conserved domain: PRK12690
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=452.40 Aligned_cols=228 Identities=34% Similarity=0.512 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~~~~Yta~sg~~a~~~~ldviaNNlANvnT~GfK~~~~~f~~~~~~~~~---~~~~-----------~---~~~~~~~~~ 64 (237)
T PRK12690 2 DAAGYTTLTRQSGLMREMQVVANNIANSSTTGFRREGLVFSEYVKSTGG---EASL-----------S---MASAGARQT 64 (237)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCC---CCCC-----------C---CCCCCCEEE
T ss_conf 1689999999999998678898899877774327263448999862478---8763-----------3---134663465
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 33578733265212123237752653148985778752122352588341466761044----31013565322101331
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVP----GIVIPEETREIKVSRSG 156 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~----~~~~p~~~~~i~i~~dG 156 (262)
T Consensus 65 d~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~VL~~~g~pI~ip~~~~~~~I~~dG 143 (237)
T PRK12690 65 SLEQGGLTQTGGQFDLAIEGEGFFMVETPQGE-RLTRAGAFTPNAEGELVTPDGYRLLDAGGAPIFIPPDARSVAVGADG 143 (237)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEEEECCCC-EEEECCCEEECCCCCEECCCCCEEECCCCCCEEECCCCCEEEECCCC
T ss_conf 41776845569821599858957999807983-69973627898998889389989157999834837998537998997
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 25521588654322211000002662001006886433466665520002467762068607300102349999999999
Q gi|254780378|r 157 QILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMIS 236 (262)
Q Consensus 157 ~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~ 236 (262)
T Consensus 144 ~i~~------~~~~vg~l~l~~~~~~~~L~~~g~~~~~~~~~~------~~~--~~~~v~qG~LE~SNVn~~~EMv~mI~ 209 (237)
T PRK12690 144 TISA------DGQPLGQVGLFQPDDPLGLRREGGTRFRAEGGV------EPA--EGASLLQGFLEGSNVNPILEIARMIE 209 (237)
T ss_pred EEEE------CCEEEEEEEEEECCCHHHHEECCCCEECCCCCC------CCC--CCCEEEECCEECCCCCHHHHHHHHHH
T ss_conf 0965------886878888981278377057789457278887------877--78748735210122689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999871
Q gi|254780378|r 237 AQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 237 ~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
T Consensus 210 ~qR~fe~~~k~i~~~De~~~~ain 233 (237)
T PRK12690 210 VQRAYELGQSFLDAEDDRIRQTIR 233 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998999999999999999