HHsearch alignment for GI: 254780378 and conserved domain: PRK12693
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional.
Probab=100.00 E-value=0 Score=518.66 Aligned_cols=259 Identities=44% Similarity=0.787 Sum_probs=241.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~r~lYta~sGm~a~~~~l~viaNNlANvnT~GfK~~~~~F~~~l~~~~~~~g~~~~--~~~~~p~~~~~g~gv~~~~~~~ 79 (261)
T PRK12693 2 IRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLYQTIRQPGAQSS--QNTTLPSGLQVGTGVRPVATQK 79 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCC--CCCCCCCCCEECCCEEECCCEE
T ss_conf 65899999999999974578888888777643385747299999876403677666--5555776530023123022212
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044310135653221013312552
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILA 160 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~ 160 (262)
T Consensus 80 ~fsqG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~i~ip~~~~~i~i~~dG~i~~ 159 (261)
T PRK12693 80 IFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQPEITIPENATSITIGTDGTVSV 159 (261)
T ss_pred ECCCCCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEEEEEEECCCCCCEEEECCCCEEEE
T ss_conf 21577503069820399848807999758984647744436898997589089988665310389984047789987999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15886543222110000026620010068864334666655200024677620686073001023499999999999999
Q gi|254780378|r 161 VTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 (262)
Q Consensus 161 ~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ 240 (262)
T Consensus 160 ~~~g~~~~~~ig~l~l~~f~~~~~L~~~G~nlf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Em~~mI~~qR~ 239 (261)
T PRK12693 160 TQAGQAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPVEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRA 239 (261)
T ss_pred EECCCCCCEEEEEEEEEEECCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 85798762477799999614814533148850653477778533678878722585385654446699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999998715
Q gi|254780378|r 241 YEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 241 ye~n~k~i~t~Dem~~~~~~l 261 (262)
T Consensus 240 ye~n~K~i~t~De~l~~~~nl 260 (261)
T PRK12693 240 YEMNSKAISTADQMLQYVNQL 260 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999978999999999999862