HHsearch alignment for GI: 254780378 and conserved domain: PRK12694
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=511.43 Aligned_cols=259 Identities=43% Similarity=0.744 Sum_probs=240.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~~~lY~a~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~g~~~~~~~~ 79 (260)
T PRK12694 2 NRSLWIAKTGLNAQQAQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGA--QSTQQTELPSGLQLGTGVRQVATER 79 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCC--CCCCCCCCCCCCEECCCEEEEEEEE
T ss_conf 25899999999999984889988898777765564723099998876315676--6565555776520034216667887
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 33578733265212123237752653148985778752122352588341466761044310135653221013312552
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEETREIKVSRSGQILA 160 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~~~i~i~~dG~I~~ 160 (262)
T Consensus 80 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~i~ip~~~~~i~i~~dG~i~~ 159 (260)
T PRK12694 80 LFTQGNLQQTGNSKDVAINGQGFFQVLMPDGTTAYTRDGSFQTNAQGQLVTSSGYPLQPAITIPQNATSLTIGKDGTVSV 159 (260)
T ss_pred ECCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEEECCCCCCCCCCEEEECCCCEEEE
T ss_conf 51678713169831289858957888558995748876646899999888289988740553488860578757860888
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15886543222110000026620010068864334666655200024677620686073001023499999999999999
Q gi|254780378|r 161 VTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQRA 240 (262)
Q Consensus 161 ~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~qR~ 240 (262)
T Consensus 160 ~~~g~~~~~~vg~l~l~~f~n~~~L~~~G~~l~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNVd~~~Emv~mI~~qRa 239 (260)
T PRK12694 160 TQPGSSNAVQIGQLQLATFINPAGLQAKGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVEELVNMIQTQRA 239 (260)
T ss_pred ECCCCCCCEEEEEEEEEEECCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 51798653144689998503716642058973120367788754667878731684486752146399999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999998715
Q gi|254780378|r 241 YEMNSKVIEAADEMSSLITKM 261 (262)
Q Consensus 241 ye~n~k~i~t~Dem~~~~~~l 261 (262)
T Consensus 240 ye~~~k~i~t~De~l~~~~ql 260 (260)
T PRK12694 240 YEINSKAVTTSDQMLQRLTQM 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999988999999999998668