HHsearch alignment for GI: 254780378 and conserved domain: PRK12715
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional.
Probab=98.89 E-value=6.2e-10 Score=79.83 Aligned_cols=67 Identities=36% Similarity=0.500 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 1 ~sllnig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~----------------~~~~~~~~G~Gv~v~~i~R 64 (649)
T PRK12715 1 MSILNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIAS----------------NRYAGSYIGAGVSVSSIYR 64 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC----------------CCCCCCCCCCCEEEEEEEE
T ss_conf 976889999999999999887052552689980414666422467----------------6667873106889757998
Q ss_pred CCC
Q ss_conf 335
Q gi|254780378|r 81 VYT 83 (262)
Q Consensus 81 ~~~ 83 (262)
T Consensus 65 ~~d 67 (649)
T PRK12715 65 NVD 67 (649)
T ss_pred HHH
T ss_conf 463