HHsearch alignment for GI: 254780378 and conserved domain: PRK12816
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=516.13 Aligned_cols=260 Identities=43% Similarity=0.732 Sum_probs=242.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~r~lyta~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~G~~~~~~~~ 79 (264)
T PRK12816 2 MRSLWTAATGMIAQQYNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQVRAGTPAT--EDTLIPLGVQVGHGVKVAATQR 79 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCEEECCCEE
T ss_conf 54899999999999985788989998776665585747189998876521588765--5554666643244256222135
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEE
Q ss_conf 3357873326521212323775265314898577875212235258834146676104431013565--32210133125
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEET--REIKVSRSGQI 158 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~--~~i~i~~dG~I 158 (262)
T Consensus 80 ~f~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~i~~P~~~~~~~i~i~~dG~i 159 (264)
T PRK12816 80 LFEQGSLQATGLKTDVAIEGEGFFKILLPDGTYAYTRDGSFKIDSNRQLVTSNGYLLLPEIIFPEEYILNSIMISEEGIV 159 (264)
T ss_pred ECCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCEE
T ss_conf 51688854069820389848948999737995638875547899998889099989278753898755564488789849
Q ss_pred EECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 52158865432221100000266200100688643346666552000246776206860730010234999999999999
Q gi|254780378|r 159 LAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQ 238 (262)
Q Consensus 159 ~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~q 238 (262)
T Consensus 160 ~~~~~~~~~~~~vg~l~l~~~~np~~L~~~G~nl~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNV~~~~EMv~mI~~q 239 (264)
T PRK12816 160 TVKVGEDIEPIELGQIELYRFVNPAGLQAIGKNLFKETVASGQEIPGTPGSEGMGKVLQGFLEMSNVSIVEEMVTMIVAQ 239 (264)
T ss_pred EEECCCCCCCEEEEEEEEEEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHH
T ss_conf 99538987741556778987227044331378520026667775557778787205832847622365999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999987159
Q gi|254780378|r 239 RAYEMNSKVIEAADEMSSLITKMR 262 (262)
Q Consensus 239 R~ye~n~k~i~t~Dem~~~~~~lr 262 (262)
T Consensus 240 R~fe~~~K~i~t~De~~~~~~nl~ 263 (264)
T PRK12816 240 RAYEINSKAIQTSDNMLGTANNLK 263 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999998626