HHsearch alignment for GI: 254780378 and conserved domain: PRK12816

>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00  E-value=0  Score=516.13  Aligned_cols=260  Identities=43%  Similarity=0.732  Sum_probs=242.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r    1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN   80 (262)
Q Consensus         1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~   80 (262)
T Consensus         2 ~r~lyta~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~G~~~~~~~~   79 (264)
T PRK12816          2 MRSLWTAATGMIAQQYNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQVRAGTPAT--EDTLIPLGVQVGHGVKVAATQR   79 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCEEECCCEE
T ss_conf             54899999999999985788989998776665585747189998876521588765--5554666643244256222135


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEE
Q ss_conf             3357873326521212323775265314898577875212235258834146676104431013565--32210133125
Q gi|254780378|r   81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIPEET--REIKVSRSGQI  158 (262)
Q Consensus        81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~~~~p~~~--~~i~i~~dG~I  158 (262)
T Consensus        80 ~f~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~i~~P~~~~~~~i~i~~dG~i  159 (264)
T PRK12816         80 LFEQGSLQATGLKTDVAIEGEGFFKILLPDGTYAYTRDGSFKIDSNRQLVTSNGYLLLPEIIFPEEYILNSIMISEEGIV  159 (264)
T ss_pred             ECCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCEE
T ss_conf             51688854069820389848948999737995638875547899998889099989278753898755564488789849


Q ss_pred             EECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf             52158865432221100000266200100688643346666552000246776206860730010234999999999999
Q gi|254780378|r  159 LAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISEMISAQ  238 (262)
Q Consensus       159 ~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~lI~~q  238 (262)
T Consensus       160 ~~~~~~~~~~~~vg~l~l~~~~np~~L~~~G~nl~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNV~~~~EMv~mI~~q  239 (264)
T PRK12816        160 TVKVGEDIEPIELGQIELYRFVNPAGLQAIGKNLFKETVASGQEIPGTPGSEGMGKVLQGFLEMSNVSIVEEMVTMIVAQ  239 (264)
T ss_pred             EEECCCCCCCEEEEEEEEEEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHH
T ss_conf             99538987741556778987227044331378520026667775557778787205832847622365999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999987159
Q gi|254780378|r  239 RAYEMNSKVIEAADEMSSLITKMR  262 (262)
Q Consensus       239 R~ye~n~k~i~t~Dem~~~~~~lr  262 (262)
T Consensus       240 R~fe~~~K~i~t~De~~~~~~nl~  263 (264)
T PRK12816        240 RAYEINSKAIQTSDNMLGTANNLK  263 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999998626