HHsearch alignment for GI: 254780378 and conserved domain: PRK12818
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=456.57 Aligned_cols=242 Identities=30% Similarity=0.457 Sum_probs=202.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 90489999999999996599977542177734000022299999876402567665556654566631144202112322
Q gi|254780378|r 1 MKAFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQAEKVAGSPSQSADKAVVPEGISIGSGVQISSVRN 80 (262)
Q Consensus 1 lr~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~ 80 (262)
T Consensus 2 ~~~ly~a~sgm~a~~~~ldviaNNlAN~nT~GfK~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 79 (255)
T PRK12818 2 IRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIENYDKKV--GNKNIKNIIGGLSMGSKIDEVNT 79 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 6689999999999998778998999877756448585006568999864104446--78666664454145226435676
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCC
Q ss_conf 335787332652121232377526531489857787521223525883414667610443-------1013565322101
Q gi|254780378|r 81 VYTQGEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPG-------IVIPEETREIKVS 153 (262)
Q Consensus 81 ~~~qG~l~~Tg~~lD~Ai~G~Gff~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~vl~~-------~~~p~~~~~i~i~ 153 (262)
T Consensus 80 ~~~qG~l~~Tg~~lDlAI~G~GfF~V~~-~g~~~yTR~G~f~vd~~G~Lvt~~G~~vLg~~~~~~~~~pi~~~~~~i~i~ 158 (255)
T PRK12818 80 LFTQGIIKSTDKPTDFAIQGRGFFTVER-NGRNYYTRDGHFHVDTQGYLVNDSGYYVMGINNATGAREPIYVGNKKFSTD 158 (255)
T ss_pred ECCCCCEEECCCCCEEEECCCCEEEEEC-CCCEEEEECCCEEECCCCCEECCCCCEEECCCCCCCCCCCEECCCCCEEEC
T ss_conf 4278784545981049986985899955-996589975657798997689289989207888877756651489808988
Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 33125521588654322211000002662001006886433466665520002467762068607300102349999999
Q gi|254780378|r 154 RSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNIGDNLLARTSVSGDPIISNPDDIGFAHVKQGYLEASNVDAVKEISE 233 (262)
Q Consensus 154 ~dG~I~~~~~~~~~~~~i~~i~l~~f~n~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Emv~ 233 (262)
T Consensus 159 ~dG~i~~------~~~~~~~l~~~~~~~~~~L~~~G~~lf~~~---------~~~~~~~~~v~qG~LE~SNVn~~~EM~~ 223 (255)
T PRK12818 159 ASGNISL------DGVPSYKFQVADFNDYNSLKKIGDNLYSGN---------NPINNNGAIVRQNSLEKSNVNVTNEMVN 223 (255)
T ss_pred CCCEEEE------CCCCCEEEEEEECCCHHHCEECCCCCCCCC---------CCCCCCCCEEEECCEECCCCCHHHHHHH
T ss_conf 9825985------575412689981488043637688751379---------8775777338726410012689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999871
Q gi|254780378|r 234 MISAQRAYEMNSKVIEAADEMSSLITK 260 (262)
Q Consensus 234 lI~~qR~ye~n~k~i~t~Dem~~~~~~ 260 (262)
T Consensus 224 mI~~qRafe~~~k~i~t~De~~~~a~n 250 (255)
T PRK12818 224 MMTTMRSFETNQKIVQSIDETLGKAVN 250 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999