HHsearch alignment for GI: 254780378 and conserved domain: TIGR01396
>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=96.66 E-value=0.002 Score=40.31 Aligned_cols=45 Identities=33% Similarity=0.454 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 489999999999996599977542177734000022299999876
Q gi|254780378|r 3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQA 47 (262)
Q Consensus 3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~ 47 (262)
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~~~l~~~ 48 (134)
T TIGR01396 4 ALGLLQKALDLRSLRQEVLANNIANADTPGYKAKDLSFEAELKKA 48 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHH
T ss_conf 044677776577776666654310035665310110278888887