HHsearch alignment for GI: 254780378 and conserved domain: TIGR01396

>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=96.66  E-value=0.002  Score=40.31  Aligned_cols=45  Identities=33%  Similarity=0.454  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             489999999999996599977542177734000022299999876
Q gi|254780378|r    3 AFMIAAAGMSAQQTNLEIIANNIANINTTGYKRARAEFADFLYQA   47 (262)
Q Consensus         3 ~ly~a~sgm~a~~~~l~~isnNlAN~nT~GfK~~~~~f~~~~~~~   47 (262)
T Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~~~l~~~   48 (134)
T TIGR01396         4 ALGLLQKALDLRSLRQEVLANNIANADTPGYKAKDLSFEAELKKA   48 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHH
T ss_conf             044677776577776666654310035665310110278888887